Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8009F01.3
        

               Conread position:
               78-291
               

               Cow position:
               chr3:59034833-59035061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               17, 114
               

               Conread position:
               84-288
               

               Cow position:
               chr3:14633171-14632965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               136, 53
               

               Conread position:
               86-264
               

               Cow position:
               chr3:11198959-11198790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               87-262
               

               Cow position:
               chr3:52650712-52650538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               126, 21
               

               Conread position:
               87-270
               

               Cow position:
               chr3:9843406-9843585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               116, 12
               

               Conread position:
               87-282
               

               Cow position:
               chr3:8393169-8393362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               51, 21
               

               Conread position:
               87-282
               

               Cow position:
               chr3:51234278-51234084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               50, 13
               

               Conread position:
               87-291
               

               Cow position:
               chr3:44932331-44932537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               126, 21
               

               Conread position:
               87-291
               

               Cow position:
               chr3:53592878-53592668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               50, 14
               

               Conread position:
               88-247
               

               Cow position:
               chr3:14626338-14626181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               88-252
               

               Cow position:
               chr3:25691573-25691731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               88-252
               

               Cow position:
               chr3:78946013-78945851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               128, 20
               

               Conread position:
               88-255
               

               Cow position:
               chr3:67161760-67161927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               88-261
               

               Cow position:
               chr3:73590179-73590005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               129, 13
               

               Conread position:
               88-262
               

               Cow position:
               chr3:15752811-15752641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               134, 20
               

               Conread position:
               88-266
               

               Cow position:
               chr3:25059897-25060074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               46, 20
               

               Conread position:
               88-268
               

               Cow position:
               chr3:31047131-31046955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               88-269
               

               Cow position:
               chr3:29813061-29813243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               120, 93
               

               Conread position:
               88-270
               

               Cow position:
               chr3:4031790-4031972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               133, 13
               

               Conread position:
               88-270
               

               Cow position:
               chr3:15859847-15859668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               138, 13
               

               Conread position:
               88-270
               

               Cow position:
               chr3:18393568-18393396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               153, 20
               

               Conread position:
               88-270
               

               Cow position:
               chr3:21693765-21693949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               88-270
               

               Cow position:
               chr3:28692614-28692431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               88-270
               

               Cow position:
               chr3:66884121-66883942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               43, 20
               

               Conread position:
               88-270
               

               Cow position:
               chr3:82460993-82461177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               17, 94
               

               Conread position:
               88-280
               

               Cow position:
               chr3:8060947-8061139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               137, 20
               

               Conread position:
               88-280
               

               Cow position:
               chr3:71246841-71247035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               49, 96
               

               Conread position:
               88-282
               

               Cow position:
               chr3:18066955-18067151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               126, 13
               

               Conread position:
               88-282
               

               Cow position:
               chr3:20678015-20677827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               176, 20
               

               Conread position:
               88-282
               

               Cow position:
               chr3:59333586-59333783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               12, 87
               

               Conread position:
               88-282
               

               Cow position:
               chr3:61143917-61144109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               21, 14
               

               Conread position:
               88-282
               

               Cow position:
               chr3:67930362-67930171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               184, 12
               

               Conread position:
               88-285
               

               Cow position:
               chr3:15052132-15051933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               163
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               132, 20
               

               Conread position:
               88-286
               

               Cow position:
               chr3:57624281-57624477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               49, 17
               

               Conread position:
               88-286
               

               Cow position:
               chr3:65236843-65237040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               43, 12
               

               Conread position:
               88-287
               

               Cow position:
               chr3:19708285-19708091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               49, 12
               

               Conread position:
               88-288
               

               Cow position:
               chr3:2674849-2675047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               46, 13
               

               Conread position:
               88-288
               

               Cow position:
               chr3:53112993-53113193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               125, 20
               

               Conread position:
               88-288
               

               Cow position:
               chr3:65058522-65058716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               88-288
               

               Cow position:
               chr3:67744803-67744610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               178, 20
               

               Conread position:
               88-288
               

               Cow position:
               chr3:71237976-71238172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               177, 20
               

               Conread position:
               88-288
               

               Cow position:
               chr3:71497321-71497120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               114, 13
               

               Conread position:
               88-289
               

               Cow position:
               chr3:15506271-15506468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               184, 11
               

               Conread position:
               88-289
               

               Cow position:
               chr3:73759696-73759497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               113, 12
               

               Conread position:
               88-291
               

               Cow position:
               chr3:2506657-2506457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:4050015-4050214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               45, 13
               

               Conread position:
               88-291
               

               Cow position:
               chr3:5365491-5365698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               43, 13
               

               Conread position:
               88-291
               

               Cow position:
               chr3:23471644-23471438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               42, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:26981884-26982079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               88-291
               

               Cow position:
               chr3:34669908-34669712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:51578499-51578300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               168, 5
               

               Conread position:
               88-291
               

               Cow position:
               chr3:54945948-54946152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               125, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:55712249-55712461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:55836005-55835800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               111, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:57273886-57274080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               188, 13
               

               Conread position:
               88-291
               

               Cow position:
               chr3:61840098-61840296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               125, 17
               

               Conread position:
               88-291
               

               Cow position:
               chr3:64281112-64280909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               140, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:68708184-68707992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               88-291
               

               Cow position:
               chr3:68881292-68881100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               88-291
               

               Cow position:
               chr3:73708868-73709068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               136, 13
               

               Conread position:
               88-291
               

               Cow position:
               chr3:73764376-73764178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               88-291
               

               Cow position:
               chr3:83201704-83201503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               134, 11
               

               Conread position:
               88-291
               

               Cow position:
               chr3:83490903-83491107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               50, 20
               

               Conread position:
               88-293
               

               Cow position:
               chr3:49650204-49650411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               49, 10
               

               Conread position:
               88-294
               

               Cow position:
               chr3:75158179-75158385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               88-295
               

               Cow position:
               chr3:59597001-59597203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               176, 16
               

               Conread position:
               88-295
               

               Cow position:
               chr3:74502502-74502300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               88-296
               

               Cow position:
               chr3:1830749-1830550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               131, 20
               

               Conread position:
               88-303
               

               Cow position:
               chr3:7678487-7678690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               52, 20
               

               Conread position:
               88-303
               

               Cow position:
               chr3:45647500-45647716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               124, 13
               

               Conread position:
               88-309
               

               Cow position:
               chr3:7331297-7331087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               15, 96
               

               Conread position:
               88-310
               

               Cow position:
               chr3:53270648-53270870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               88-313
               

               Cow position:
               chr3:27274351-27274572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               125, 20
               

               Conread position:
               88-320
               

               Cow position:
               chr3:72675912-72676142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               181, 20
               

               Conread position:
               88-321
               

               Cow position:
               chr3:45881729-45881950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               177, 20
               

               Conread position:
               88-321
               

               Cow position:
               chr3:66900922-66900681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               50, 20
               

               Conread position:
               88-321
               

               Cow position:
               chr3:73394940-73395168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               89-252
               

               Cow position:
               chr3:49140221-49140059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               122, 11
               

               Conread position:
               89-254
               

               Cow position:
               chr3:15661885-15661720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               25, 10
               

               Conread position:
               89-264
               

               Cow position:
               chr3:59271362-59271535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               129, 19
               

               Conread position:
               89-272
               

               Cow position:
               chr3:84000433-84000613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               50, 19
               

               Conread position:
               89-276
               

               Cow position:
               chr3:5100946-5100768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               89-282
               

               Cow position:
               chr3:65413462-65413266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               135, 92
               

               Conread position:
               89-287
               

               Cow position:
               chr3:63269040-63269240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               89-288
               

               Cow position:
               chr3:77365481-77365272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               51, 93
               

               Conread position:
               89-291
               

               Cow position:
               chr3:22232831-22232633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               132, 12
               

               Conread position:
               89-291
               

               Cow position:
               chr3:23408530-23408337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               89-291
               

               Cow position:
               chr3:28908384-28908182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               89-295
               

               Cow position:
               chr3:38691589-38691381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               89-313
               

               Cow position:
               chr3:116012-116233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               16, 82
               

               Conread position:
               89-340
               

               Cow position:
               chr3:59000927-59000687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               135, 11
               

               Conread position:
               90-291
               

               Cow position:
               chr3:3649404-3649203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               11, 38
               

               Conread position:
               90-321
               

               Cow position:
               chr3:42423515-42423276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               41, 224
               

               Conread position:
               91-288
               

               Cow position:
               chr3:30179900-30180104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               42, 91
               

               Conread position:
               93-296
               

               Cow position:
               chr3:70899717-70899917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               94-286
               

               Cow position:
               chr3:77581932-77582121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               37, 7
               

               Conread position:
               94-289
               

               Cow position:
               chr3:73298908-73299097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               26, 57
               

               Conread position:
               96-291
               

               Cow position:
               chr3:24935196-24935386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               169, 21
               

               Conread position:
               101-260
               

               Cow position:
               chr3:49731813-49731651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               35, 82
               

               Conread position:
               101-282
               

               Cow position:
               chr3:80581492-80581670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               13, 82
               

               Conread position:
               101-288
               

               Cow position:
               chr3:12287063-12287247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               13, 64
               

               Conread position:
               101-288
               

               Cow position:
               chr3:59691728-59691909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               179, 81
               

               Conread position:
               101-309
               

               Cow position:
               chr3:56545-56337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               118, 35
               

               Conread position:
               102-291
               

               Cow position:
               chr3:3889737-3889547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               21, 80
               

               Conread position:
               103-288
               

               Cow position:
               chr3:18686739-18686924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               170, 78
               

               Conread position:
               108-285
               

               Cow position:
               chr3:8733519-8733343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               29, 81
               

               Conread position:
               108-288
               

               Cow position:
               chr3:20993648-20993831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               98, 73
               

               Conread position:
               108-288
               

               Cow position:
               chr3:32184184-32184000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               109, 73
               

               Conread position:
               109-286
               

               Cow position:
               chr3:1517674-1517496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               54, 28
               

               Conread position:
               109-288
               

               Cow position:
               chr3:74846876-74846691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               16, 77
               

               Conread position:
               110-280
               

               Cow position:
               chr3:8393775-8393949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               103, 71
               

               Conread position:
               110-288
               

               Cow position:
               chr3:57760337-57760516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               21, 76
               

               Conread position:
               110-291
               

               Cow position:
               chr3:53739347-53739164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               107, 72
               

               Conread position:
               111-291
               

               Cow position:
               chr3:59473961-59474143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               95, 7
               

               Conread position:
               113-248
               

               Cow position:
               chr3:5899663-5899801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               113-248
               

               Cow position:
               chr3:8604172-8604042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               113-251
               

               Cow position:
               chr3:17952497-17952637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               20, 69
               

               Conread position:
               113-255
               

               Cow position:
               chr3:27212203-27212347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               109, 68
               

               Conread position:
               113-256
               

               Cow position:
               chr3:55063026-55062887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               24, 59
               

               Conread position:
               113-259
               

               Cow position:
               chr3:24872557-24872701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               107, 33
               

               Conread position:
               113-264
               

               Cow position:
               chr3:41367142-41366988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               104, 24
               

               Conread position:
               113-265
               

               Cow position:
               chr3:2393123-2392969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 70
               

               Conread position:
               113-268
               

               Cow position:
               chr3:57554008-57553852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               106, 26
               

               Conread position:
               113-269
               

               Cow position:
               chr3:73443245-73443092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               113-270
               

               Cow position:
               chr3:35005622-35005774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               113-270
               

               Cow position:
               chr3:55970347-55970505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               24, 67
               

               Conread position:
               113-274
               

               Cow position:
               chr3:44623043-44622884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               113-280
               

               Cow position:
               chr3:58540687-58540520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               24, 71
               

               Conread position:
               113-280
               

               Cow position:
               chr3:83921044-83921200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               18, 54
               

               Conread position:
               113-282
               

               Cow position:
               chr3:65800437-65800600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               104, 35
               

               Conread position:
               113-283
               

               Cow position:
               chr3:26903957-26904119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               24, 65
               

               Conread position:
               113-283
               

               Cow position:
               chr3:49218472-49218301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               114, 68
               

               Conread position:
               113-285
               

               Cow position:
               chr3:5374176-5374343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               113-285
               

               Cow position:
               chr3:74134547-74134719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               106, 53
               

               Conread position:
               113-285
               

               Cow position:
               chr3:79292671-79292844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               25, 60
               

               Conread position:
               113-286
               

               Cow position:
               chr3:77271431-77271261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               156, 25
               

               Conread position:
               113-287
               

               Cow position:
               chr3:14601871-14601694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               24, 70
               

               Conread position:
               113-287
               

               Cow position:
               chr3:66610001-66609827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               148
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               109, 69
               

               Conread position:
               113-288
               

               Cow position:
               chr3:15992556-15992736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               101, 68
               

               Conread position:
               113-288
               

               Cow position:
               chr3:20437808-20437638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               152, 26
               

               Conread position:
               113-288
               

               Cow position:
               chr3:55124436-55124262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               31, 27
               

               Conread position:
               113-288
               

               Cow position:
               chr3:69961872-69961700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               136, 68
               

               Conread position:
               113-288
               

               Cow position:
               chr3:76015132-76015310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               113-289
               

               Cow position:
               chr3:10347197-10347370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               113-289
               

               Cow position:
               chr3:41328291-41328460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               147, 23
               

               Conread position:
               113-289
               

               Cow position:
               chr3:59799089-59799267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               111, 68
               

               Conread position:
               113-290
               

               Cow position:
               chr3:68586863-68587043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               106, 25
               

               Conread position:
               113-291
               

               Cow position:
               chr3:26920750-26920929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               27, 63
               

               Conread position:
               113-291
               

               Cow position:
               chr3:26970669-26970834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               156, 70
               

               Conread position:
               113-291
               

               Cow position:
               chr3:29807307-29807484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               104, 68
               

               Conread position:
               113-291
               

               Cow position:
               chr3:31309513-31309333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               27, 71
               

               Conread position:
               113-291
               

               Cow position:
               chr3:48241458-48241635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               111, 68
               

               Conread position:
               113-291
               

               Cow position:
               chr3:53221856-53222034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               154, 68
               

               Conread position:
               113-291
               

               Cow position:
               chr3:53508463-53508632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               159, 67
               

               Conread position:
               113-291
               

               Cow position:
               chr3:53790695-53790516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               98, 68
               

               Conread position:
               113-291
               

               Cow position:
               chr3:55819589-55819779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 71
               

               Conread position:
               113-291
               

               Cow position:
               chr3:56476522-56476703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               107, 67
               

               Conread position:
               113-291
               

               Cow position:
               chr3:58767111-58767284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               109, 43
               

               Conread position:
               113-291
               

               Cow position:
               chr3:58969059-58968882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               13, 69
               

               Conread position:
               113-291
               

               Cow position:
               chr3:59884231-59884048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               25, 69
               

               Conread position:
               113-291
               

               Cow position:
               chr3:62826777-62826597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               122, 68
               

               Conread position:
               113-291
               

               Cow position:
               chr3:68146001-68145822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               113-291
               

               Cow position:
               chr3:70762281-70762102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               108, 68
               

               Conread position:
               113-291
               

               Cow position:
               chr3:76713484-76713304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               25, 70
               

               Conread position:
               113-291
               

               Cow position:
               chr3:76922821-76922642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               103, 68
               

               Conread position:
               113-292
               

               Cow position:
               chr3:210158-210342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               24, 59
               

               Conread position:
               113-292
               

               Cow position:
               chr3:70401744-70401919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               152, 29
               

               Conread position:
               113-295
               

               Cow position:
               chr3:50768524-50768704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               115, 68
               

               Conread position:
               113-296
               

               Cow position:
               chr3:12705704-12705517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               98, 68
               

               Conread position:
               113-296
               

               Cow position:
               chr3:13302007-13301824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               25, 69
               

               Conread position:
               113-296
               

               Cow position:
               chr3:14552720-14552901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               152, 58
               

               Conread position:
               113-296
               

               Cow position:
               chr3:48252725-48252911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               113-296
               

               Cow position:
               chr3:52652233-52652059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               111, 34
               

               Conread position:
               113-296
               

               Cow position:
               chr3:53046817-53046637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               18, 66
               

               Conread position:
               113-296
               

               Cow position:
               chr3:53240108-53240282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               114, 33
               

               Conread position:
               113-296
               

               Cow position:
               chr3:57764069-57764244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               154
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               113-296
               

               Cow position:
               chr3:75057286-75057108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               100, 62
               

               Conread position:
               113-310
               

               Cow position:
               chr3:26960749-26960548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               113-310
               

               Cow position:
               chr3:50614479-50614681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               100, 68
               

               Conread position:
               113-320
               

               Cow position:
               chr3:75080612-75080814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               163, 54
               

               Conread position:
               113-321
               

               Cow position:
               chr3:26219208-26218999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               107, 37
               

               Conread position:
               113-321
               

               Cow position:
               chr3:74533194-74533401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               107, 59
               

               Conread position:
               113-321
               

               Cow position:
               chr3:74878750-74878537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               18, 72
               

               Conread position:
               113-321
               

               Cow position:
               chr3:75570606-75570402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               19, 68
               

               Conread position:
               113-329
               

               Cow position:
               chr3:48578678-48578900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               101, 24
               

               Conread position:
               114-264
               

               Cow position:
               chr3:3164653-3164503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               26, 69
               

               Conread position:
               114-268
               

               Cow position:
               chr3:61539643-61539802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               23, 68
               

               Conread position:
               114-270
               

               Cow position:
               chr3:44101812-44101966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               23, 71
               

               Conread position:
               114-270
               

               Cow position:
               chr3:68648007-68648165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               20, 68
               

               Conread position:
               114-270
               

               Cow position:
               chr3:69849663-69849509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               81, 26
               

               Conread position:
               114-270
               

               Cow position:
               chr3:75687596-75687439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 70
               

               Conread position:
               114-272
               

               Cow position:
               chr3:27697136-27696978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               18, 69
               

               Conread position:
               114-274
               

               Cow position:
               chr3:24468536-24468379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               114-274
               

               Cow position:
               chr3:53318246-53318403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               114-276
               

               Cow position:
               chr3:53192579-53192422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               114, 31
               

               Conread position:
               114-282
               

               Cow position:
               chr3:59101671-59101839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               19, 69
               

               Conread position:
               114-283
               

               Cow position:
               chr3:17895689-17895855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               103, 64
               

               Conread position:
               114-286
               

               Cow position:
               chr3:22820411-22820588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               106, 67
               

               Conread position:
               114-288
               

               Cow position:
               chr3:15751879-15751695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               23, 68
               

               Conread position:
               114-288
               

               Cow position:
               chr3:30222028-30222209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               17, 69
               

               Conread position:
               114-288
               

               Cow position:
               chr3:52863342-52863166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               19, 70
               

               Conread position:
               114-288
               

               Cow position:
               chr3:58960746-58960566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               23, 70
               

               Conread position:
               114-288
               

               Cow position:
               chr3:71231238-71231414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 71
               

               Conread position:
               114-290
               

               Cow position:
               chr3:29887579-29887399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               94, 68
               

               Conread position:
               114-291
               

               Cow position:
               chr3:34871411-34871588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               103, 52
               

               Conread position:
               114-291
               

               Cow position:
               chr3:46901039-46901220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 33
               

               Conread position:
               114-291
               

               Cow position:
               chr3:54100880-54100705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               9, 70
               

               Conread position:
               114-291
               

               Cow position:
               chr3:67929421-67929239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 70
               

               Conread position:
               114-291
               

               Cow position:
               chr3:70565895-70565717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               112, 67
               

               Conread position:
               114-291
               

               Cow position:
               chr3:70895893-70896069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               158, 68
               

               Conread position:
               114-296
               

               Cow position:
               chr3:17957305-17957493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               23, 68
               

               Conread position:
               114-296
               

               Cow position:
               chr3:66292334-66292150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               99, 67
               

               Conread position:
               114-296
               

               Cow position:
               chr3:76268139-76267949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               24, 71
               

               Conread position:
               114-296
               

               Cow position:
               chr3:80564806-80564992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               98, 67
               

               Conread position:
               114-296
               

               Cow position:
               chr3:81277856-81277672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               114-310
               

               Cow position:
               chr3:4319557-4319751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 42
               

               Conread position:
               114-310
               

               Cow position:
               chr3:75046035-75045838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               16, 64
               

               Conread position:
               114-321
               

               Cow position:
               chr3:49461090-49460874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               26, 70
               

               Conread position:
               115-261
               

               Cow position:
               chr3:27247346-27247200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               99, 68
               

               Conread position:
               115-274
               

               Cow position:
               chr3:59514949-59515106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               113, 22
               

               Conread position:
               115-282
               

               Cow position:
               chr3:3638030-3638193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               18, 67
               

               Conread position:
               115-282
               

               Cow position:
               chr3:60597386-60597556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               21, 51
               

               Conread position:
               115-287
               

               Cow position:
               chr3:48810793-48810628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               149, 49
               

               Conread position:
               115-291
               

               Cow position:
               chr3:13507310-13507489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               94, 53
               

               Conread position:
               115-291
               

               Cow position:
               chr3:63179704-63179878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               21, 70
               

               Conread position:
               115-291
               

               Cow position:
               chr3:67704386-67704567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               102, 65
               

               Conread position:
               115-303
               

               Cow position:
               chr3:26065847-26066031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               158, 66
               

               Conread position:
               115-310
               

               Cow position:
               chr3:39171639-39171446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               109, 66
               

               Conread position:
               116-270
               

               Cow position:
               chr3:42178001-42178155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               21, 67
               

               Conread position:
               116-282
               

               Cow position:
               chr3:7940713-7940542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               9, 67
               

               Conread position:
               116-288
               

               Cow position:
               chr3:26739575-26739396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               26, 68
               

               Conread position:
               117-265
               

               Cow position:
               chr3:18056289-18056432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               117-270
               

               Cow position:
               chr3:19793747-19793592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 71
               

               Conread position:
               117-270
               

               Cow position:
               chr3:45647978-45648133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               100, 64
               

               Conread position:
               117-270
               

               Cow position:
               chr3:81039900-81039750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               15, 65
               

               Conread position:
               117-286
               

               Cow position:
               chr3:25754872-25755040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               97, 53
               

               Conread position:
               117-288
               

               Cow position:
               chr3:61323178-61323343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               7, 66
               

               Conread position:
               117-291
               

               Cow position:
               chr3:62046508-62046685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               100, 53
               

               Conread position:
               117-292
               

               Cow position:
               chr3:39328240-39328422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               20, 65
               

               Conread position:
               118-270
               

               Cow position:
               chr3:15231875-15232029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               13, 66
               

               Conread position:
               118-291
               

               Cow position:
               chr3:12712074-12711894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               8, 67
               

               Conread position:
               121-291
               

               Cow position:
               chr3:78896498-78896668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               10, 62
               

               Conread position:
               122-261
               

               Cow position:
               chr3:6900483-6900618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               122-270
               

               Cow position:
               chr3:23920579-23920431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               15, 62
               

               Conread position:
               122-278
               

               Cow position:
               chr3:28323036-28323184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               99, 13
               

               Conread position:
               122-282
               

               Cow position:
               chr3:17447758-17447600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               92, 59
               

               Conread position:
               122-283
               

               Cow position:
               chr3:9638518-9638360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               98, 16
               

               Conread position:
               122-291
               

               Cow position:
               chr3:22221170-22221348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               15, 31
               

               Conread position:
               122-291
               

               Cow position:
               chr3:34937694-34937865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               95, 59
               

               Conread position:
               122-291
               

               Cow position:
               chr3:55272196-55272024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               98, 59
               

               Conread position:
               122-296
               

               Cow position:
               chr3:3985178-3985348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               122-310
               

               Cow position:
               chr3:3032255-3032447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               17, 62
               

               Conread position:
               123-291
               

               Cow position:
               chr3:46541976-46541808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               142, 59
               

               Conread position:
               124-274
               

               Cow position:
               chr3:75727732-75727582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               8, 61
               

               Conread position:
               124-290
               

               Cow position:
               chr3:5366623-5366789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               126-291
               

               Cow position:
               chr3:15954232-15954064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               81, 55
               

               Conread position:
               126-293
               

               Cow position:
               chr3:43726931-43727102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               11, 33
               

               Conread position:
               128-310
               

               Cow position:
               chr3:1785385-1785205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               137, 51
               

               Conread position:
               129-279
               

               Cow position:
               chr3:78894464-78894318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               129-291
               

               Cow position:
               chr3:70334106-70333944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               151, 50
               

               Conread position:
               129-296
               

               Cow position:
               chr3:83215117-83215288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               92, 53
               

               Conread position:
               130-264
               

               Cow position:
               chr3:61024444-61024309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               89, 51
               

               Conread position:
               130-266
               

               Cow position:
               chr3:44534900-44534765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               97, 16
               

               Conread position:
               130-271
               

               Cow position:
               chr3:15790419-15790554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               130-280
               

               Cow position:
               chr3:82056250-82056103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               135, 54
               

               Conread position:
               130-285
               

               Cow position:
               chr3:80053680-80053526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               142, 49
               

               Conread position:
               130-291
               

               Cow position:
               chr3:5097065-5097228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               88, 50
               

               Conread position:
               130-291
               

               Cow position:
               chr3:73820511-73820348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               77, 51
               

               Conread position:
               130-291
               

               Cow position:
               chr3:74500097-74500264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               87, 52
               

               Conread position:
               130-291
               

               Cow position:
               chr3:80468816-80468655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               94, 39
               

               Conread position:
               130-291
               

               Cow position:
               chr3:80953505-80953669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               90, 51
               

               Conread position:
               130-296
               

               Cow position:
               chr3:65969020-65969193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               91, 51
               

               Conread position:
               130-298
               

               Cow position:
               chr3:27544474-27544314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               7, 27
               

               Conread position:
               130-302
               

               Cow position:
               chr3:71238332-71238504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               99, 52
               

               Conread position:
               130-322
               

               Cow position:
               chr3:11711820-11712018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               75, 51
               

               Conread position:
               131-257
               

               Cow position:
               chr3:3062423-3062553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               88, 52
               

               Conread position:
               131-291
               

               Cow position:
               chr3:78093524-78093368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               145, 50
               

               Conread position:
               132-291
               

               Cow position:
               chr3:17235348-17235190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               133, 26
               

               Conread position:
               132-291
               

               Cow position:
               chr3:34270776-34270934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               90, 49
               

               Conread position:
               132-309
               

               Cow position:
               chr3:46350531-46350711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               81, 49
               

               Conread position:
               136-260
               

               Cow position:
               chr3:30701171-30701298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               81, 45
               

               Conread position:
               136-270
               

               Cow position:
               chr3:81359240-81359109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               136-291
               

               Cow position:
               chr3:17058675-17058525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               140, 9
               

               Conread position:
               136-321
               

               Cow position:
               chr3:15228954-15228771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               128, 46
               

               Conread position:
               137-291
               

               Cow position:
               chr3:7661718-7661873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               62, 45
               

               Conread position:
               137-291
               

               Cow position:
               chr3:59621779-59621627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               128, 28
               

               Conread position:
               137-291
               

               Cow position:
               chr3:70334829-70334674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               135, 45
               

               Conread position:
               138-280
               

               Cow position:
               chr3:54552014-54551872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               137, 44
               

               Conread position:
               138-291
               

               Cow position:
               chr3:71430340-71430183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               96, 43
               

               Conread position:
               138-291
               

               Cow position:
               chr3:84175959-84175802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               81, 43
               

               Conread position:
               138-310
               

               Cow position:
               chr3:61278782-61278949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               134, 43
               

               Conread position:
               139-268
               

               Cow position:
               chr3:22509894-22510023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               83, 42
               

               Conread position:
               142-270
               

               Cow position:
               chr3:59040438-59040567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               143-270
               

               Cow position:
               chr3:54740017-54739886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               106
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               79, 39
               

               Conread position:
               145-295
               

               Cow position:
               chr3:35621176-35621325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               76, 37
               

               Conread position:
               151-269
               

               Cow position:
               chr3:10103927-10104038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               153-288
               

               Cow position:
               chr3:33693699-33693837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               48, 30
               

               Conread position:
               154-291
               

               Cow position:
               chr3:15443847-15443708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               65, 29
               

               Conread position:
               163-291
               

               Cow position:
               chr3:65019974-65019844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               58, 19
               
Show alignments to all cow chromosomes.
Conread position:	78-291
Cow position:	chr3:59034833-59035061 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	171
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	17, 114
Conread position:	84-288
Cow position:	chr3:14633171-14632965 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	151
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	136, 53
Conread position:	86-264
Cow position:	chr3:11198959-11198790 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	132
Alignm E-value:	7e-24
Alignm gaps (pig, cow):	35, 0
Conread position:	87-262
Cow position:	chr3:52650712-52650538 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	128
Alignm E-value:	6e-22
Alignm gaps (pig, cow):	126, 21
Conread position:	87-270
Cow position:	chr3:9843406-9843585 (view UCSC Genome Browser custom track)
Alignm length:	186
Alignm identity:	145
Alignm E-value:	7e-34
Alignm gaps (pig, cow):	116, 12
Conread position:	87-282
Cow position:	chr3:8393169-8393362 (view UCSC Genome Browser custom track)
Alignm length:	200
Alignm identity:	145
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	51, 21
Conread position:	87-291
Cow position:	chr3:44932331-44932537 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	153
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	126, 21
Conread position:	88-247
Cow position:	chr3:14626338-14626181 (view UCSC Genome Browser custom track)
Alignm length:	162
Alignm identity:	121
Alignm E-value:	7e-24
Alignm gaps (pig, cow):	49, 13
Conread position:	88-252
Cow position:	chr3:25691573-25691731 (view UCSC Genome Browser custom track)
Alignm length:	167
Alignm identity:	130
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	49, 13
Conread position:	88-255
Cow position:	chr3:67161760-67161927 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	134
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	46, 12
Conread position:	88-261
Cow position:	chr3:73590179-73590005 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	137
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	129, 13
Conread position:	88-262
Cow position:	chr3:15752811-15752641 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	134
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	134, 20
Conread position:	88-266
Cow position:	chr3:25059897-25060074 (view UCSC Genome Browser custom track)
Alignm length:	182
Alignm identity:	138
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	46, 20
Conread position:	88-268
Cow position:	chr3:31047131-31046955 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	137
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	20, 0
Conread position:	88-269
Cow position:	chr3:29813061-29813243 (view UCSC Genome Browser custom track)
Alignm length:	184
Alignm identity:	135
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	120, 93
Conread position:	88-270
Cow position:	chr3:4031790-4031972 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	140
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	133, 13
Conread position:	88-280
Cow position:	chr3:8060947-8061139 (view UCSC Genome Browser custom track)
Alignm length:	199
Alignm identity:	151
Alignm E-value:	5e-31
Alignm gaps (pig, cow):	137, 20
Conread position:	88-282
Cow position:	chr3:18066955-18067151 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	157
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	126, 13
Conread position:	88-285
Cow position:	chr3:15052132-15051933 (view UCSC Genome Browser custom track)
Alignm length:	204
Alignm identity:	163
Alignm E-value:	4.99997e-41
Alignm gaps (pig, cow):	132, 20
Conread position:	88-286
Cow position:	chr3:57624281-57624477 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	147
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	49, 17