Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8009H15.5
        

               Conread position:
               20-255
               

               Cow position:
               chr4:7810218-7810453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               21-570
               

               Cow position:
               chr4:65650561-65650013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 162
               

               Conread position:
               33-446
               

               Cow position:
               chr4:242801-243228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               283
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               222, 45
               

               Conread position:
               35-358
               

               Cow position:
               chr4:24198218-24197894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               42, 163
               

               Conread position:
               41-337
               

               Cow position:
               chr4:44573167-44573450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               191, 36
               

               Conread position:
               41-648
               

               Cow position:
               chr4:21873778-21874382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 9
               

               Conread position:
               44-425
               

               Cow position:
               chr4:19237829-19238213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               268
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               217, 35
               

               Conread position:
               46-550
               

               Cow position:
               chr4:41602465-41602951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               333
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               251, 19
               

               Conread position:
               49-409
               

               Cow position:
               chr4:14159531-14159164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 21
               

               Conread position:
               50-255
               

               Cow position:
               chr4:42278645-42278435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               51-383
               

               Cow position:
               chr4:12697239-12697575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               118, 6
               

               Conread position:
               51-398
               

               Cow position:
               chr4:2244395-2244036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               173, 21
               

               Conread position:
               52-394
               

               Cow position:
               chr4:16339993-16339653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               204, 24
               

               Conread position:
               53-362
               

               Cow position:
               chr4:38799600-38799278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               24, 169
               

               Conread position:
               54-346
               

               Cow position:
               chr4:24671582-24671275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               47, 134
               

               Conread position:
               54-417
               

               Cow position:
               chr4:28378051-28377692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               20, 36
               

               Conread position:
               55-392
               

               Cow position:
               chr4:54695479-54695131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               165, 14
               

               Conread position:
               56-255
               

               Cow position:
               chr4:1736887-1737085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               19, 30
               

               Conread position:
               56-255
               

               Cow position:
               chr4:1760615-1760417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               19, 30
               

               Conread position:
               56-255
               

               Cow position:
               chr4:26704573-26704375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               19, 47
               

               Conread position:
               56-255
               

               Cow position:
               chr4:34347441-34347242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               56-317
               

               Cow position:
               chr4:59118556-59118273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               56-323
               

               Cow position:
               chr4:42863972-42864242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               19, 133
               

               Conread position:
               56-328
               

               Cow position:
               chr4:41833664-41833385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               26, 10
               

               Conread position:
               56-341
               

               Cow position:
               chr4:59884687-59884390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               56-375
               

               Cow position:
               chr4:8692561-8692241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               205, 10
               

               Conread position:
               56-375
               

               Cow position:
               chr4:64072752-64072422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               21, 113
               

               Conread position:
               56-426
               

               Cow position:
               chr4:8203034-8202648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               174, 10
               

               Conread position:
               56-450
               

               Cow position:
               chr4:46861982-46861594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               56-566
               

               Cow position:
               chr4:41301406-41300882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 373
               

               Conread position:
               57-219
               

               Cow position:
               chr4:65538978-65538815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               57-255
               

               Cow position:
               chr4:33090150-33089949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               57-255
               

               Cow position:
               chr4:38467213-38467410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               57-344
               

               Cow position:
               chr4:27348789-27349086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 101
               

               Conread position:
               57-346
               

               Cow position:
               chr4:40576309-40576021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               26, 100
               

               Conread position:
               57-383
               

               Cow position:
               chr4:46274790-46275127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 256
               

               Conread position:
               57-394
               

               Cow position:
               chr4:25972498-25972843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               191, 9
               

               Conread position:
               57-414
               

               Cow position:
               chr4:2609840-2610198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               26, 54
               

               Conread position:
               57-416
               

               Cow position:
               chr4:33564470-33564815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               240
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               204, 99
               

               Conread position:
               57-420
               

               Cow position:
               chr4:38181292-38181653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               167, 9
               

               Conread position:
               57-424
               

               Cow position:
               chr4:43370252-43369875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 35
               

               Conread position:
               57-436
               

               Cow position:
               chr4:1237505-1237127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               20, 123
               

               Conread position:
               57-465
               

               Cow position:
               chr4:39009566-39009988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               296
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 131
               

               Conread position:
               57-505
               

               Cow position:
               chr4:39231925-39231464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 30
               

               Conread position:
               57-519
               

               Cow position:
               chr4:23853802-23854251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               57-546
               

               Cow position:
               chr4:962052-961553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               334
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               206, 92
               

               Conread position:
               57-547
               

               Cow position:
               chr4:3850155-3850650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 109
               

               Conread position:
               57-551
               

               Cow position:
               chr4:27755708-27755202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 131
               

               Conread position:
               57-552
               

               Cow position:
               chr4:20523-21015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 96
               

               Conread position:
               57-552
               

               Cow position:
               chr4:29805783-29805271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               335
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               26, 185
               

               Conread position:
               57-603
               

               Cow position:
               chr4:25889251-25888684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               375
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               28, 63
               

               Conread position:
               57-638
               

               Cow position:
               chr4:25369718-25370291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 9
               

               Conread position:
               58-337
               

               Cow position:
               chr4:48875018-48874737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               19, 32
               

               Conread position:
               58-400
               

               Cow position:
               chr4:8133938-8133588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 197
               

               Conread position:
               58-407
               

               Cow position:
               chr4:58857137-58856774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 116
               

               Conread position:
               58-415
               

               Cow position:
               chr4:59333371-59333015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 98
               

               Conread position:
               58-420
               

               Cow position:
               chr4:48499429-48499810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               262
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               7, 182
               

               Conread position:
               58-428
               

               Cow position:
               chr4:15282958-15283340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               16, 117
               

               Conread position:
               58-430
               

               Cow position:
               chr4:9649622-9649985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               7, 163
               

               Conread position:
               59-205
               

               Cow position:
               chr4:22861320-22861174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               14, 116
               

               Conread position:
               59-255
               

               Cow position:
               chr4:46068903-46069100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               24, 99
               

               Conread position:
               59-266
               

               Cow position:
               chr4:19502203-19501994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               59-266
               

               Cow position:
               chr4:68796258-68796468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               59-419
               

               Cow position:
               chr4:19306856-19307231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 163
               

               Conread position:
               59-420
               

               Cow position:
               chr4:23554852-23555229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               198, 107
               

               Conread position:
               59-531
               

               Cow position:
               chr4:28399800-28399331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               14, 62
               

               Conread position:
               59-547
               

               Cow position:
               chr4:11872313-11871823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 332
               

               Conread position:
               60-177
               

               Cow position:
               chr4:53822492-53822608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               60-254
               

               Cow position:
               chr4:65972840-65972653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               170, 11
               

               Conread position:
               60-255
               

               Cow position:
               chr4:8760849-8761042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               60-255
               

               Cow position:
               chr4:19420937-19421126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               24, 6
               

               Conread position:
               60-259
               

               Cow position:
               chr4:1462888-1463083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               111, 38
               

               Conread position:
               60-382
               

               Cow position:
               chr4:14513636-14513304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               60-395
               

               Cow position:
               chr4:21058789-21058436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               254
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               106, 167
               

               Conread position:
               60-412
               

               Cow position:
               chr4:43543133-43542772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               250
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               164, 284
               

               Conread position:
               60-437
               

               Cow position:
               chr4:53999919-53999521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 374
               

               Conread position:
               60-438
               

               Cow position:
               chr4:351829-352226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 0
               

               Conread position:
               60-443
               

               Cow position:
               chr4:54494440-54494817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               23, 104
               

               Conread position:
               60-464
               

               Cow position:
               chr4:27292359-27291942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 93
               

               Conread position:
               60-521
               

               Cow position:
               chr4:16799587-16799113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 101
               

               Conread position:
               60-544
               

               Cow position:
               chr4:63459614-63459129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 70
               

               Conread position:
               60-548
               

               Cow position:
               chr4:65179532-65179047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 30
               

               Conread position:
               60-623
               

               Cow position:
               chr4:68387396-68387970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 6
               

               Conread position:
               60-639
               

               Cow position:
               chr4:20328112-20327530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 120
               

               Conread position:
               60-640
               

               Cow position:
               chr4:47730472-47731066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 111
               

               Conread position:
               60-644
               

               Cow position:
               chr4:19584305-19584912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 375
               

               Conread position:
               61-259
               

               Cow position:
               chr4:41999580-41999386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               61-262
               

               Cow position:
               chr4:48142382-48142583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               61-337
               

               Cow position:
               chr4:14812922-14812640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               23, 90
               

               Conread position:
               61-432
               

               Cow position:
               chr4:23311658-23311272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               257
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               165, 291
               

               Conread position:
               61-440
               

               Cow position:
               chr4:5777431-5777053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               267
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               16, 272
               

               Conread position:
               61-445
               

               Cow position:
               chr4:48784578-48784972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               194, 111
               

               Conread position:
               61-514
               

               Cow position:
               chr4:25806502-25806965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 48
               

               Conread position:
               61-570
               

               Cow position:
               chr4:36892958-36893479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 99
               

               Conread position:
               62-255
               

               Cow position:
               chr4:18108390-18108592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               12, 187
               

               Conread position:
               62-259
               

               Cow position:
               chr4:17774990-17774792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               12, 162
               

               Conread position:
               62-341
               

               Cow position:
               chr4:39646301-39646587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               10, 201
               

               Conread position:
               62-398
               

               Cow position:
               chr4:1373996-1374312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               8, 126
               

               Conread position:
               62-412
               

               Cow position:
               chr4:67392564-67392923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 132
               

               Conread position:
               62-445
               

               Cow position:
               chr4:29035519-29035908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 112
               

               Conread position:
               62-462
               

               Cow position:
               chr4:47774028-47773626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               276
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               197, 80
               

               Conread position:
               62-483
               

               Cow position:
               chr4:17124689-17124258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 198
               

               Conread position:
               62-644
               

               Cow position:
               chr4:62471670-62472280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 362
               

               Conread position:
               63-226
               

               Cow position:
               chr4:36660126-36659961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               63-398
               

               Cow position:
               chr4:27997286-27997633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               249
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               21, 284
               

               Conread position:
               63-404
               

               Cow position:
               chr4:16239535-16239193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               103, 196
               

               Conread position:
               63-545
               

               Cow position:
               chr4:25983840-25984317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 111
               

               Conread position:
               63-551
               

               Cow position:
               chr4:10055815-10056306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               325
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               198, 323
               

               Conread position:
               63-568
               

               Cow position:
               chr4:7704705-7704206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               325
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               131, 240
               

               Conread position:
               63-607
               

               Cow position:
               chr4:12003826-12004381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 352
               

               Conread position:
               64-179
               

               Cow position:
               chr4:67408096-67408213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               64-310
               

               Cow position:
               chr4:47047344-47047610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               10, 99
               

               Conread position:
               64-360
               

               Cow position:
               chr4:19255927-19256227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 110
               

               Conread position:
               64-437
               

               Cow position:
               chr4:54540604-54540993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               262
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               25, 356
               

               Conread position:
               64-503
               

               Cow position:
               chr4:13271753-13272197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 34
               

               Conread position:
               64-514
               

               Cow position:
               chr4:51898606-51899072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 35
               

               Conread position:
               64-521
               

               Cow position:
               chr4:66112470-66111998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 108
               

               Conread position:
               64-536
               

               Cow position:
               chr4:20139924-20139429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 168
               

               Conread position:
               64-565
               

               Cow position:
               chr4:62772334-62771804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 503
               

               Conread position:
               64-569
               

               Cow position:
               chr4:45644708-45644200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               64-570
               

               Cow position:
               chr4:65919226-65919728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               64-571
               

               Cow position:
               chr4:14152676-14153228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               372
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               10, 237
               

               Conread position:
               64-605
               

               Cow position:
               chr4:11193788-11194344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 108
               

               Conread position:
               64-626
               

               Cow position:
               chr4:19096900-19097475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 107
               

               Conread position:
               64-626
               

               Cow position:
               chr4:64791491-64792025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               379
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               114, 73
               

               Conread position:
               64-638
               

               Cow position:
               chr4:3421249-3421822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 154
               

               Conread position:
               65-203
               

               Cow position:
               chr4:40410749-40410611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               66-195
               

               Cow position:
               chr4:51866507-51866635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               66-213
               

               Cow position:
               chr4:28173309-28173162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               13, 33
               

               Conread position:
               66-214
               

               Cow position:
               chr4:44956597-44956448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               66-220
               

               Cow position:
               chr4:21943145-21942989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               66-220
               

               Cow position:
               chr4:59643184-59643342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               66-224
               

               Cow position:
               chr4:49814409-49814249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               66-225
               

               Cow position:
               chr4:28676607-28676446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               66-255
               

               Cow position:
               chr4:22906643-22906834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               14, 126
               

               Conread position:
               66-255
               

               Cow position:
               chr4:66119208-66119019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               9, 108
               

               Conread position:
               66-280
               

               Cow position:
               chr4:1355905-1355693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               11, 67
               

               Conread position:
               66-284
               

               Cow position:
               chr4:38067495-38067706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               11, 73
               

               Conread position:
               66-316
               

               Cow position:
               chr4:25354160-25354426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               8, 42
               

               Conread position:
               66-326
               

               Cow position:
               chr4:37169208-37168945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               66-341
               

               Cow position:
               chr4:11925495-11925208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               8, 108
               

               Conread position:
               66-349
               

               Cow position:
               chr4:22073061-22072769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 88
               

               Conread position:
               66-380
               

               Cow position:
               chr4:27466300-27466631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               17, 261
               

               Conread position:
               66-387
               

               Cow position:
               chr4:27546365-27546705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               66-437
               

               Cow position:
               chr4:61972870-61972475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               265
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               9, 133
               

               Conread position:
               66-438
               

               Cow position:
               chr4:43866240-43865865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 64
               

               Conread position:
               66-438
               

               Cow position:
               chr4:53545647-53546018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               13, 78
               

               Conread position:
               66-481
               

               Cow position:
               chr4:11201425-11201852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               8, 97
               

               Conread position:
               66-481
               

               Cow position:
               chr4:53208845-53209269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 154
               

               Conread position:
               66-509
               

               Cow position:
               chr4:17833300-17832840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               309
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               9, 158
               

               Conread position:
               66-545
               

               Cow position:
               chr4:18255469-18255948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 158
               

               Conread position:
               66-546
               

               Cow position:
               chr4:43148007-43148509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 140
               

               Conread position:
               66-571
               

               Cow position:
               chr4:45589979-45589480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 56
               

               Conread position:
               66-638
               

               Cow position:
               chr4:27276938-27276348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 195
               

               Conread position:
               67-214
               

               Cow position:
               chr4:54918473-54918324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               67-215
               

               Cow position:
               chr4:13375181-13375331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-220
               

               Cow position:
               chr4:6414316-6414471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-220
               

               Cow position:
               chr4:6446320-6446475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:3446633-3446473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:24807470-24807310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:26131722-26131882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:31774755-31774595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:33146421-33146582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:33628723-33628563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:62120572-62120732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr4:64061466-64061305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-226
               

               Cow position:
               chr4:43884649-43884809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               67-299
               

               Cow position:
               chr4:48959288-48959040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               22, 42
               

               Conread position:
               67-300
               

               Cow position:
               chr4:4169382-4169632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-303
               

               Cow position:
               chr4:4487529-4487782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-306
               

               Cow position:
               chr4:7260247-7259991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-318
               

               Cow position:
               chr4:68470643-68470376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               67-323
               

               Cow position:
               chr4:17375850-17375590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               192, 167
               

               Conread position:
               67-340
               

               Cow position:
               chr4:41639882-41640170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               24, 277
               

               Conread position:
               67-358
               

               Cow position:
               chr4:12018167-12018472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               16, 93
               

               Conread position:
               67-360
               

               Cow position:
               chr4:50018985-50018674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 299
               

               Conread position:
               67-364
               

               Cow position:
               chr4:45113827-45113512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               67-371
               

               Cow position:
               chr4:29834185-29834508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-372
               

               Cow position:
               chr4:19025808-19025484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               22, 109
               

               Conread position:
               67-372
               

               Cow position:
               chr4:32658270-32657947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-374
               

               Cow position:
               chr4:64875660-64875984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               22, 255
               

               Conread position:
               67-384
               

               Cow position:
               chr4:34644173-34643837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               22, 132
               

               Conread position:
               67-388
               

               Cow position:
               chr4:17819193-17818856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               67-388
               

               Cow position:
               chr4:60788816-60789156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               223
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               67-389
               

               Cow position:
               chr4:30307022-30306682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               22, 107
               

               Conread position:
               67-391
               

               Cow position:
               chr4:11641012-11640672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:162644-162986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               25, 132
               

               Conread position:
               67-392
               

               Cow position:
               chr4:2190734-2190395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               190, 18
               

               Conread position:
               67-392
               

               Cow position:
               chr4:2590968-2590625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:3354382-3354039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:6395652-6395995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:6862641-6862295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               22, 108
               

               Conread position:
               67-392
               

               Cow position:
               chr4:8377574-8377243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               21, 218
               

               Conread position:
               67-392
               

               Cow position:
               chr4:10044205-10043862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:10136150-10136481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               153, 302
               

               Conread position:
               67-392
               

               Cow position:
               chr4:10425041-10425384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:14967643-14967986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:15802945-15803288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:17032937-17032594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:17091396-17091057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               26, 107
               

               Conread position:
               67-392
               

               Cow position:
               chr4:18335383-18335041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 251
               

               Conread position:
               67-392
               

               Cow position:
               chr4:18738180-18737837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:20616150-20615810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               25, 265
               

               Conread position:
               67-392
               

               Cow position:
               chr4:22086374-22086031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:26398938-26399281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               22, 314
               

               Conread position:
               67-392
               

               Cow position:
               chr4:27337774-27338115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               18, 309
               

               Conread position:
               67-392
               

               Cow position:
               chr4:29189029-29188686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:30541725-30542068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:33069278-33068936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               16, 122
               

               Conread position:
               67-392
               

               Cow position:
               chr4:37707591-37707248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:38152695-38152352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:38864615-38864957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               22, 220
               

               Conread position:
               67-392
               

               Cow position:
               chr4:42596805-42597148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:42865571-42865910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               22, 291
               

               Conread position:
               67-392
               

               Cow position:
               chr4:48411346-48411003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:50860453-50860110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:52601663-52602005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:54339373-54339030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:58292294-58292638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               22, 101
               

               Conread position:
               67-392
               

               Cow position:
               chr4:58748209-58748552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:59781299-59781641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 318
               

               Conread position:
               67-392
               

               Cow position:
               chr4:60579566-60579223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-392
               

               Cow position:
               chr4:61816840-61816493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               25, 267
               

               Conread position:
               67-392
               

               Cow position:
               chr4:64156292-64156635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-417
               

               Cow position:
               chr4:63195019-63194650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               7, 355
               

               Conread position:
               67-418
               

               Cow position:
               chr4:36899939-36900308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               67-426
               

               Cow position:
               chr4:2562812-2563188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 334
               

               Conread position:
               67-428
               

               Cow position:
               chr4:21553576-21553198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               16, 346
               

               Conread position:
               67-432
               

               Cow position:
               chr4:7584677-7585058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-432
               

               Cow position:
               chr4:9041511-9041892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-432
               

               Cow position:
               chr4:15500896-15500515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               22, 345
               

               Conread position:
               67-432
               

               Cow position:
               chr4:19575091-19575457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 177
               

               Conread position:
               67-432
               

               Cow position:
               chr4:40218382-40218759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               251
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               23, 349
               

               Conread position:
               67-432
               

               Cow position:
               chr4:46585343-46584958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-432
               

               Cow position:
               chr4:56191601-56191220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-432
               

               Cow position:
               chr4:57240055-57240431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               22, 278
               

               Conread position:
               67-432
               

               Cow position:
               chr4:57493723-57493342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 291
               

               Conread position:
               67-432
               

               Cow position:
               chr4:59383901-59383518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               22, 347
               

               Conread position:
               67-432
               

               Cow position:
               chr4:63102206-63102587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-433
               

               Cow position:
               chr4:46021154-46021536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:2253754-2254137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               22, 293
               

               Conread position:
               67-437
               

               Cow position:
               chr4:4772275-4772661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:6150832-6150446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:6547126-6546740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               22, 314
               

               Conread position:
               67-437
               

               Cow position:
               chr4:7138802-7138416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:9005883-9006269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               7, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:10122970-10123356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               25, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:10420805-10421191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               17, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:13764331-13763945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:13834906-13835292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:14047988-14048374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:14386711-14386326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 354
               

               Conread position:
               67-437
               

               Cow position:
               chr4:15618258-15618644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:16000734-16000348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               25, 354
               

               Conread position:
               67-437
               

               Cow position:
               chr4:16765942-16765556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               25, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:17752373-17752759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:18672788-18673174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:18684513-18684127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 108
               

               Conread position:
               67-437
               

               Cow position:
               chr4:21044600-21044214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:24094362-24093976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:25045492-25045106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:26347480-26347095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:26538228-26538614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:27918891-27918505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               25, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:28456469-28456083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:28855674-28856060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:28864838-28864452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               25, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:29559965-29559579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:30474944-30475330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:33171703-33172090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               22, 354
               

               Conread position:
               67-437
               

               Cow position:
               chr4:33554216-33553830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:36350417-36350803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:37584304-37583918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:38834550-38834164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:41429668-41429282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:44700325-44699939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:45105394-45105009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               25, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:45377023-45377409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               261
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 319
               

               Conread position:
               67-437
               

               Cow position:
               chr4:46253912-46253526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               23, 345
               

               Conread position:
               67-437
               

               Cow position:
               chr4:47020866-47021252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:47114552-47114935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               22, 86
               

               Conread position:
               67-437
               

               Cow position:
               chr4:47116867-47117251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               149, 351
               

               Conread position:
               67-437
               

               Cow position:
               chr4:48894137-48894523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:49176050-49176436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:58577103-58576717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               25, 354
               

               Conread position:
               67-437
               

               Cow position:
               chr4:62654078-62653692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-437
               

               Cow position:
               chr4:65198237-65197851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               22, 353
               

               Conread position:
               67-452
               

               Cow position:
               chr4:652591-652978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               67-613
               

               Cow position:
               chr4:7080453-7081019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               69-392
               

               Cow position:
               chr4:44051836-44052178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               69-437
               

               Cow position:
               chr4:34996784-34997166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               14, 33
               

               Conread position:
               69-607
               

               Cow position:
               chr4:48485602-48486159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 46
               

               Conread position:
               69-640
               

               Cow position:
               chr4:30973949-30974528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 65
               

               Conread position:
               71-228
               

               Cow position:
               chr4:9519908-9520064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               71-606
               

               Cow position:
               chr4:19434872-19435412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 152
               

               Conread position:
               72-225
               

               Cow position:
               chr4:54161496-54161343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               72-369
               

               Cow position:
               chr4:2671651-2671351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               191, 7
               

               Conread position:
               72-392
               

               Cow position:
               chr4:10397600-10397936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               72-392
               

               Cow position:
               chr4:14814139-14814473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               88, 111
               

               Conread position:
               72-392
               

               Cow position:
               chr4:41598929-41599267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               232
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               72-415
               

               Cow position:
               chr4:22073690-22073349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 25
               

               Conread position:
               72-437
               

               Cow position:
               chr4:604489-604110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               145, 346
               

               Conread position:
               72-437
               

               Cow position:
               chr4:9357978-9358347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               186, 336
               

               Conread position:
               72-438
               

               Cow position:
               chr4:22236862-22236489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 60
               

               Conread position:
               72-542
               

               Cow position:
               chr4:65816079-65815614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 223
               

               Conread position:
               72-605
               

               Cow position:
               chr4:4185734-4186279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 88
               

               Conread position:
               72-638
               

               Cow position:
               chr4:7429933-7430505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 103
               

               Conread position:
               73-326
               

               Cow position:
               chr4:69017982-69018245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               183, 149
               

               Conread position:
               73-461
               

               Cow position:
               chr4:52017235-52016844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 24
               

               Conread position:
               73-570
               

               Cow position:
               chr4:19541735-19542254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 89
               

               Conread position:
               75-211
               

               Cow position:
               chr4:27664519-27664654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               75-255
               

               Cow position:
               chr4:67706431-67706608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               118, 104
               

               Conread position:
               75-372
               

               Cow position:
               chr4:4981590-4981905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               173, 22
               

               Conread position:
               75-372
               

               Cow position:
               chr4:7249953-7249645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               216
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               186, 0
               

               Conread position:
               75-398
               

               Cow position:
               chr4:55271141-55270808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 98
               

               Conread position:
               75-509
               

               Cow position:
               chr4:26323358-26323801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               300
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               182, 97
               

               Conread position:
               75-571
               

               Cow position:
               chr4:42672787-42673297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 276
               

               Conread position:
               76-180
               

               Cow position:
               chr4:49089110-49089214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               85
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               76-205
               

               Cow position:
               chr4:19493137-19493266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               76-220
               

               Cow position:
               chr4:4283307-4283163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               76-255
               

               Cow position:
               chr4:20644200-20644379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               76-255
               

               Cow position:
               chr4:38706339-38706161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               25, 150
               

               Conread position:
               76-255
               

               Cow position:
               chr4:45499928-45499750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               76-296
               

               Cow position:
               chr4:1027651-1027436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               19, 85
               

               Conread position:
               76-299
               

               Cow position:
               chr4:34223509-34223743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               179, 151
               

               Conread position:
               76-324
               

               Cow position:
               chr4:9697-9442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 119
               

               Conread position:
               76-324
               

               Cow position:
               chr4:17585401-17585143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               185, 0
               

               Conread position:
               76-326
               

               Cow position:
               chr4:39273825-39274089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               120, 208
               

               Conread position:
               76-326
               

               Cow position:
               chr4:56226510-56226765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               111, 30
               

               Conread position:
               76-327
               

               Cow position:
               chr4:26009063-26009329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               181, 0
               

               Conread position:
               76-331
               

               Cow position:
               chr4:1436098-1435839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               96, 112
               

               Conread position:
               76-358
               

               Cow position:
               chr4:41097530-41097828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               76-361
               

               Cow position:
               chr4:29813917-29813626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 210
               

               Conread position:
               76-364
               

               Cow position:
               chr4:7258809-7258508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               183, 73
               

               Conread position:
               76-368
               

               Cow position:
               chr4:69405988-69406291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               181, 65
               

               Conread position:
               76-372
               

               Cow position:
               chr4:46176851-46176535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               74, 277
               

               Conread position:
               76-374
               

               Cow position:
               chr4:11091063-11090768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 85
               

               Conread position:
               76-375
               

               Cow position:
               chr4:23655611-23655924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               234
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               180, 153
               

               Conread position:
               76-388
               

               Cow position:
               chr4:18602640-18602315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               154, 290
               

               Conread position:
               76-389
               

               Cow position:
               chr4:62157888-62158214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               38, 104
               

               Conread position:
               76-393
               

               Cow position:
               chr4:11924775-11924448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               181, 141
               

               Conread position:
               76-395
               

               Cow position:
               chr4:66918513-66918857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               116, 274
               

               Conread position:
               76-400
               

               Cow position:
               chr4:4672716-4672379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               181, 112
               

               Conread position:
               76-407
               

               Cow position:
               chr4:49213101-49212756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 38
               

               Conread position:
               76-413
               

               Cow position:
               chr4:61391582-61391239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 44
               

               Conread position:
               76-419
               

               Cow position:
               chr4:65116595-65116229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               87, 146
               

               Conread position:
               76-421
               

               Cow position:
               chr4:10837744-10837412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               104, 189
               

               Conread position:
               76-422
               

               Cow position:
               chr4:28613438-28613800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 267
               

               Conread position:
               76-424
               

               Cow position:
               chr4:11918053-11917705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               99, 84
               

               Conread position:
               76-424
               

               Cow position:
               chr4:54501832-54501473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 0
               

               Conread position:
               76-426
               

               Cow position:
               chr4:21588989-21588620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               114, 30
               

               Conread position:
               76-431
               

               Cow position:
               chr4:16602438-16602069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 153
               

               Conread position:
               76-431
               

               Cow position:
               chr4:46258098-46258465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               110, 163
               

               Conread position:
               76-432
               

               Cow position:
               chr4:18282379-18282749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               140, 342
               

               Conread position:
               76-433
               

               Cow position:
               chr4:11025744-11025373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               260
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               70, 104
               

               Conread position:
               76-437
               

               Cow position:
               chr4:8439826-8439452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               247
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               179, 336
               

               Conread position:
               76-437
               

               Cow position:
               chr4:30690355-30690703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               261
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               185, 70
               

               Conread position:
               76-438
               

               Cow position:
               chr4:5984429-5984055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 307
               

               Conread position:
               76-438
               

               Cow position:
               chr4:26175626-26175258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               168, 226
               

               Conread position:
               76-438
               

               Cow position:
               chr4:42480803-42481172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               261
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               119, 96
               

               Conread position:
               76-445
               

               Cow position:
               chr4:68362557-68362920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 90
               

               Conread position:
               76-446
               

               Cow position:
               chr4:19438062-19438462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 231
               

               Conread position:
               76-478
               

               Cow position:
               chr4:24458482-24458074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 148
               

               Conread position:
               76-489
               

               Cow position:
               chr4:37620270-37619848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 129
               

               Conread position:
               76-500
               

               Cow position:
               chr4:12464465-12464893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 20
               

               Conread position:
               76-512
               

               Cow position:
               chr4:27540238-27540683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 286
               

               Conread position:
               76-538
               

               Cow position:
               chr4:21257509-21257034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 96
               

               Conread position:
               76-547
               

               Cow position:
               chr4:12560644-12561139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               321
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               116, 53
               

               Conread position:
               76-547
               

               Cow position:
               chr4:12903434-12903920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 96
               

               Conread position:
               76-552
               

               Cow position:
               chr4:44839266-44838792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 75
               

               Conread position:
               76-570
               

               Cow position:
               chr4:9815733-9815223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 97
               

               Conread position:
               76-570
               

               Cow position:
               chr4:54190725-54191209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 69
               

               Conread position:
               76-571
               

               Cow position:
               chr4:23526308-23526818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               338
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               109, 234
               

               Conread position:
               76-571
               

               Cow position:
               chr4:46477321-46476823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 107
               

               Conread position:
               76-605
               

               Cow position:
               chr4:4319525-4318993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 243
               

               Conread position:
               76-607
               

               Cow position:
               chr4:22101647-22101098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               366
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               179, 15
               

               Conread position:
               76-607
               

               Cow position:
               chr4:34166348-34165823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               352
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               183, 96
               

               Conread position:
               76-607
               

               Cow position:
               chr4:34383731-34383175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 12
               

               Conread position:
               76-607
               

               Cow position:
               chr4:46526617-46527167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 53
               

               Conread position:
               76-610
               

               Cow position:
               chr4:48152753-48152205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 263
               

               Conread position:
               76-624
               

               Cow position:
               chr4:21532012-21531462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 77
               

               Conread position:
               76-627
               

               Cow position:
               chr4:33971278-33970718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 32
               

               Conread position:
               76-629
               

               Cow position:
               chr4:13589712-13590270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               364
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               99, 27
               

               Conread position:
               76-637
               

               Cow position:
               chr4:10731837-10732413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 66
               

               Conread position:
               76-637
               

               Cow position:
               chr4:36840897-36841462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 96
               

               Conread position:
               76-637
               

               Cow position:
               chr4:51850816-51851404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 70
               

               Conread position:
               76-639
               

               Cow position:
               chr4:25197880-25197286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 146
               

               Conread position:
               76-640
               

               Cow position:
               chr4:61897915-61897358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 129
               

               Conread position:
               76-643
               

               Cow position:
               chr4:22138617-22138019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 81
               

               Conread position:
               76-644
               

               Cow position:
               chr4:3687542-3688127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 237
               

               Conread position:
               76-644
               

               Cow position:
               chr4:4084831-4084258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 80
               

               Conread position:
               76-644
               

               Cow position:
               chr4:13327337-13326751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 96
               

               Conread position:
               76-644
               

               Cow position:
               chr4:30779218-30778622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               381
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               173, 329
               

               Conread position:
               76-646
               

               Cow position:
               chr4:31136371-31136954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 54
               

               Conread position:
               76-647
               

               Cow position:
               chr4:1014687-1015275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 93
               

               Conread position:
               77-249
               

               Cow position:
               chr4:10993925-10993761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               77-381
               

               Cow position:
               chr4:23573161-23573483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               180, 89
               

               Conread position:
               77-392
               

               Cow position:
               chr4:46711030-46710700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               77-404
               

               Cow position:
               chr4:23567754-23568101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               77-437
               

               Cow position:
               chr4:6231934-6232308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               139, 341
               

               Conread position:
               77-437
               

               Cow position:
               chr4:15793672-15794049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               12, 344
               

               Conread position:
               77-437
               

               Cow position:
               chr4:44663105-44662731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               254
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               139, 341
               

               Conread position:
               77-445
               

               Cow position:
               chr4:48137534-48137908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 8
               

               Conread position:
               77-446
               

               Cow position:
               chr4:65826247-65825847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 62
               

               Conread position:
               78-255
               

               Cow position:
               chr4:64613-64438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               18, 7
               

               Conread position:
               78-326
               

               Cow position:
               chr4:1368203-1367967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               7, 23
               

               Conread position:
               78-326
               

               Cow position:
               chr4:5441086-5440821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               78-373
               

               Cow position:
               chr4:10026116-10026406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               183, 62
               

               Conread position:
               78-392
               

               Cow position:
               chr4:1007464-1007795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               12, 244
               

               Conread position:
               78-395
               

               Cow position:
               chr4:5610450-5610124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 99
               

               Conread position:
               78-422
               

               Cow position:
               chr4:35144867-35145227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               11, 106
               

               Conread position:
               78-433
               

               Cow position:
               chr4:61999833-61999463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               255
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               179, 106
               

               Conread position:
               78-437
               

               Cow position:
               chr4:120115-119758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               245
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               11, 96
               

               Conread position:
               78-437
               

               Cow position:
               chr4:18975881-18975506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               14, 342
               

               Conread position:
               78-437
               

               Cow position:
               chr4:48736453-48736828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               14, 334
               

               Conread position:
               78-437
               

               Cow position:
               chr4:62453413-62453038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               16, 342
               

               Conread position:
               79-208
               

               Cow position:
               chr4:55395103-55395230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               79-220
               

               Cow position:
               chr4:6457159-6457018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               79-220
               

               Cow position:
               chr4:10333369-10333229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               79-220
               

               Cow position:
               chr4:23150081-23149940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               79-220
               

               Cow position:
               chr4:25595910-25595769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               79-225
               

               Cow position:
               chr4:12605305-12605162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               79-225
               

               Cow position:
               chr4:31484138-31483990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               79-247
               

               Cow position:
               chr4:1491239-1491074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               96, 77
               

               Conread position:
               79-252
               

               Cow position:
               chr4:3893353-3893521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               79-255
               

               Cow position:
               chr4:14754869-14754692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               79-255
               

               Cow position:
               chr4:22366750-22366923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               79-255
               

               Cow position:
               chr4:47280505-47280332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               79-255
               

               Cow position:
               chr4:54170990-54171159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               79-255
               

               Cow position:
               chr4:61450388-61450564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               79-303
               

               Cow position:
               chr4:19835636-19835414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               188, 93
               

               Conread position:
               79-307
               

               Cow position:
               chr4:50194112-50194341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               189, 177
               

               Conread position:
               79-319
               

               Cow position:
               chr4:10041649-10041908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               100, 152
               

               Conread position:
               79-323
               

               Cow position:
               chr4:607183-607442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               79-326
               

               Cow position:
               chr4:11191584-11191841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               141, 108
               

               Conread position:
               79-326
               

               Cow position:
               chr4:49409085-49409347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               178, 0
               

               Conread position:
               79-342
               

               Cow position:
               chr4:21162313-21162556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               64, 155
               

               Conread position:
               79-345
               

               Cow position:
               chr4:42404476-42404204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               7, 51
               

               Conread position:
               79-351
               

               Cow position:
               chr4:11930544-11930830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               79-351
               

               Cow position:
               chr4:44449966-44449679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               137, 93
               

               Conread position:
               79-358
               

               Cow position:
               chr4:61304800-61304509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               176, 84
               

               Conread position:
               79-359
               

               Cow position:
               chr4:55508799-55508503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               103, 32
               

               Conread position:
               79-360
               

               Cow position:
               chr4:1061307-1061025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               70, 24
               

               Conread position:
               79-361
               

               Cow position:
               chr4:13142903-13142629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               211
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               182, 62
               

               Conread position:
               79-364
               

               Cow position:
               chr4:56409802-56410104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 122
               

               Conread position:
               79-365
               

               Cow position:
               chr4:10038902-10039201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               163, 19
               

               Conread position:
               79-371
               

               Cow position:
               chr4:26163352-26163050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               110, 51
               

               Conread position:
               79-374
               

               Cow position:
               chr4:64039732-64040027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               56, 40
               

               Conread position:
               79-374
               

               Cow position:
               chr4:69343337-69343635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               189, 43
               

               Conread position:
               79-380
               

               Cow position:
               chr4:14230005-14229686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               151, 317
               

               Conread position:
               79-384
               

               Cow position:
               chr4:61399806-61399502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               102, 53
               

               Conread position:
               79-388
               

               Cow position:
               chr4:48030435-48030760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               221
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               79-388
               

               Cow position:
               chr4:54757694-54757374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               155, 240
               

               Conread position:
               79-388
               

               Cow position:
               chr4:56852520-56852843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               234
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               178, 93
               

               Conread position:
               79-391
               

               Cow position:
               chr4:34713390-34713718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               79-392
               

               Cow position:
               chr4:5874574-5874897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               70, 78
               

               Conread position:
               79-392
               

               Cow position:
               chr4:10432361-10432695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               79-392
               

               Cow position:
               chr4:10553821-10554150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               79-392
               

               Cow position:
               chr4:13979618-13979944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               140, 203
               

               Conread position:
               79-392
               

               Cow position:
               chr4:17616316-17616644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               141, 303
               

               Conread position:
               79-392
               

               Cow position:
               chr4:26874329-26874001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               141, 87
               

               Conread position:
               79-392
               

               Cow position:
               chr4:27178400-27178729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               79-392
               

               Cow position:
               chr4:30220060-30219731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               79-392
               

               Cow position:
               chr4:36025693-36025377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               215
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               182, 69
               

               Conread position:
               79-392
               

               Cow position:
               chr4:36971314-36970998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               182, 77
               

               Conread position:
               79-392
               

               Cow position:
               chr4:39422173-39422502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               48, 53
               

               Conread position:
               79-392
               

               Cow position:
               chr4:43316078-43315750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               160, 213
               

               Conread position:
               79-392
               

               Cow position:
               chr4:60124158-60123828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               151, 229
               

               Conread position:
               79-392
               

               Cow position:
               chr4:63431047-63431378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               79-394
               

               Cow position:
               chr4:15872101-15871773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               178, 76
               

               Conread position:
               79-398
               

               Cow position:
               chr4:23565134-23565467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               182, 116
               

               Conread position:
               79-399
               

               Cow position:
               chr4:7501506-7501819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 126
               

               Conread position:
               79-399
               

               Cow position:
               chr4:46708907-46708574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               239
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               147, 93
               

               Conread position:
               79-399
               

               Cow position:
               chr4:57931521-57931864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               86, 153
               

               Conread position:
               79-400
               

               Cow position:
               chr4:53830052-53830389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               178, 0
               

               Conread position:
               79-400
               

               Cow position:
               chr4:58834779-58834454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               177, 69
               

               Conread position:
               79-404
               

               Cow position:
               chr4:2422201-2422539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               241
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               50, 73
               

               Conread position:
               79-408
               

               Cow position:
               chr4:68944556-68944211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               244
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               182, 279
               

               Conread position:
               79-409
               

               Cow position:
               chr4:34171949-34171610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 293
               

               Conread position:
               79-409
               

               Cow position:
               chr4:57555586-57555933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               79-415
               

               Cow position:
               chr4:25906705-25906360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               93, 8
               

               Conread position:
               79-420
               

               Cow position:
               chr4:12237671-12237317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               232
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               147, 327
               

               Conread position:
               79-420
               

               Cow position:
               chr4:28151151-28151492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               182, 83
               

               Conread position:
               79-421
               

               Cow position:
               chr4:69515498-69515162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               182, 136
               

               Conread position:
               79-422
               

               Cow position:
               chr4:49992707-49993046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 102
               

               Conread position:
               79-423
               

               Cow position:
               chr4:49745248-49745595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               79-426
               

               Cow position:
               chr4:6034471-6034107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               110, 104
               

               Conread position:
               79-429
               

               Cow position:
               chr4:23303691-23303325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               178, 0
               

               Conread position:
               79-431
               

               Cow position:
               chr4:30574076-30574432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 337
               

               Conread position:
               79-432
               

               Cow position:
               chr4:11901940-11901578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 93
               

               Conread position:
               79-432
               

               Cow position:
               chr4:53832671-53833029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 270
               

               Conread position:
               79-437
               

               Cow position:
               chr4:19534104-19534476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               149, 339
               

               Conread position:
               79-437
               

               Cow position:
               chr4:24119291-24118919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 311
               

               Conread position:
               79-437
               

               Cow position:
               chr4:25865137-25865509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               137, 339
               

               Conread position:
               79-438
               

               Cow position:
               chr4:22051848-22051482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 117
               

               Conread position:
               79-438
               

               Cow position:
               chr4:35940375-35940018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               178, 73
               

               Conread position:
               79-438
               

               Cow position:
               chr4:37553424-37553050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 338
               

               Conread position:
               79-438
               

               Cow position:
               chr4:41441185-41441556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               178, 233
               

               Conread position:
               79-438
               

               Cow position:
               chr4:67444765-67445134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               152, 212
               

               Conread position:
               79-445
               

               Cow position:
               chr4:22850100-22849720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 281
               

               Conread position:
               79-446
               

               Cow position:
               chr4:56233312-56233679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 87
               

               Conread position:
               79-448
               

               Cow position:
               chr4:13877819-13878180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               206, 93
               

               Conread position:
               79-478
               

               Cow position:
               chr4:19497627-19497234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 94
               
UCSC Genome Browser
               Conread position:
               79-489
               

               Cow position:
               chr4:32260227-32259805 (view  custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 278
               
UCSC Genome Browser
               
               
               
Conread position: 79-511

               
               
               
Cow position: chr4:14470948-14470507 (view  custom track)

               
               
               
Alignm length: 448

               
               
               
Alignm identity: 332

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 181, 141
UCSC Genome Browser
               
               
               
Conread position: 79-518

               
               
               
Cow position: chr4:9136897-9137349 (view  custom track)

               
               
               
Alignm length: 460

               
               
               
Alignm identity: 309

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 178, 141

               
               
               Conread position:79-530
               
               
               Cow position:chr4:17474042-17474521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):99, 162

               
               
               Conread position:79-544
               
               
               Cow position:chr4:38952179-38952649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 147

               
               
               Conread position:79-545
               
               
               Cow position:chr4:8413489-8413026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 29

               
               
               Conread position:79-545
               
               
               Cow position:chr4:24002349-24001870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 246

               
               
               Conread position:79-547
               
               
               Cow position:chr4:53100429-53100900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 26

               
               
               Conread position:79-564
               
               
               Cow position:chr4:51783791-51784294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 321

               
               
               Conread position:79-566
               
               
               Cow position:chr4:25879018-25879506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 31

               
               
               Conread position:79-566
               
               
               Cow position:chr4:33433636-33433138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 108

               
               
               Conread position:79-571
               
               
               Cow position:chr4:36577974-36577506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):380, 119

               
               
               Conread position:79-588
               
               
               Cow position:chr4:33097338-33096841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 50

               
               
               Conread position:79-590
               
               
               Cow position:chr4:59056218-59055723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 8

               
               
               Conread position:79-593
               
               
               Cow position:chr4:38934999-38935510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 51

               
               
               Conread position:79-602
               
               
               Cow position:chr4:6653367-6653882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:348
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:79-606
               
               
               Cow position:chr4:18974060-18974588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:357
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):180, 91

               
               
               Conread position:79-607
               
               
               Cow position:chr4:7965028-7964484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 93

               
               
               Conread position:79-607
               
               
               Cow position:chr4:49794302-49794813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 50

               
               
               Conread position:79-608
               
               
               Cow position:chr4:15635823-15635286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 173

               
               
               Conread position:79-618
               
               
               Cow position:chr4:38999053-38999603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:79-626
               
               
               Cow position:chr4:12591590-12591025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 65

               
               
               Conread position:79-628
               
               
               Cow position:chr4:26400577-26401143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 146

               
               
               Conread position:79-637
               
               
               Cow position:chr4:53134243-53134788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 69

               
               
               Conread position:79-639
               
               
               Cow position:chr4:9445069-9444479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 148

               
               
               Conread position:79-639
               
               
               Cow position:chr4:53207928-53208481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 80

               
               
               Conread position:79-641
               
               
               Cow position:chr4:58248032-58248602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:79-644
               
               
               Cow position:chr4:53125757-53126311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 144

               
               
               Conread position:79-644
               
               
               Cow position:chr4:59871125-59871678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:382
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):180, 102

               
               
               Conread position:79-644
               
               
               Cow position:chr4:66173174-66172595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 93

               
               
               Conread position:80-374
               
               
               Cow position:chr4:16736122-16736434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:80-392
               
               
               Cow position:chr4:29529239-29528912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):177, 240

               
               
               Conread position:80-415
               
               
               Cow position:chr4:23382181-23381844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):6, 82

               
               
               Conread position:80-432
               
               
               Cow position:chr4:43063922-43064291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):142, 344

               
               
               Conread position:80-443
               
               
               Cow position:chr4:561024-561395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 33

               
               
               Conread position:80-545
               
               
               Cow position:chr4:22841971-22842442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 107

               
               
               Conread position:80-569
               
               
               Cow position:chr4:37703887-37704384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 142

               
               
               Conread position:80-638
               
               
               Cow position:chr4:21392175-21391624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 16

               
               
               Conread position:80-644
               
               
               Cow position:chr4:13694047-13693476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 16

               
               
               Conread position:81-215
               
               
               Cow position:chr4:36548221-36548087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-220
               
               
               Cow position:chr4:42328777-42328638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-225
               
               
               Cow position:chr4:9375513-9375369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-225
               
               
               Cow position:chr4:61170107-61169963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 92

               
               
               Conread position:81-225
               
               
               Cow position:chr4:68844830-68844974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-226
               
               
               Cow position:chr4:8414738-8414593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-226
               
               
               Cow position:chr4:33020064-33019919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-253
               
               
               Cow position:chr4:41186743-41186573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):154, 91

               
               
               Conread position:81-314
               
               
               Cow position:chr4:43027657-43027419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:81-328
               
               
               Cow position:chr4:27166948-27167206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):176, 106

               
               
               Conread position:81-330
               
               
               Cow position:chr4:20025216-20025481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-346
               
               
               Cow position:chr4:33372190-33371909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:81-372
               
               
               Cow position:chr4:47264357-47264664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-388
               
               
               Cow position:chr4:16642394-16642713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-388
               
               
               Cow position:chr4:38584457-38584782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:81-389
               
               
               Cow position:chr4:18331666-18331991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-391
               
               
               Cow position:chr4:17500327-17500001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:359462-359790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:8678382-8678710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:16859142-16858819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):153, 309

               
               
               Conread position:81-392
               
               
               Cow position:chr4:17282943-17282615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:31955923-31955599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:42381732-42381405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:51859872-51860201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:54571985-54571657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:59838880-59839207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-392
               
               
               Cow position:chr4:60677154-60676827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-420
               
               
               Cow position:chr4:60856303-60856658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:81-425
               
               
               Cow position:chr4:14353059-14352694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):153, 161

               
               
               Conread position:81-432
               
               
               Cow position:chr4:5883055-5883420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):99, 91

               
               
               Conread position:81-432
               
               
               Cow position:chr4:18599821-18599456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 337

               
               
               Conread position:81-432
               
               
               Cow position:chr4:46737859-46737494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 337

               
               
               Conread position:81-437
               
               
               Cow position:chr4:28147650-28147282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 311

               
               
               Conread position:81-437
               
               
               Cow position:chr4:29515561-29515932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):135, 338

               
               
               Conread position:81-437
               
               
               Cow position:chr4:30435838-30436209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):67, 338

               
               
               Conread position:81-437
               
               
               Cow position:chr4:31535395-31535765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):146, 337

               
               
               Conread position:81-437
               
               
               Cow position:chr4:32405141-32405511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 329

               
               
               Conread position:81-437
               
               
               Cow position:chr4:50802212-50802582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 329

               
               
               Conread position:81-437
               
               
               Cow position:chr4:52186640-52187010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):135, 337

               
               
               Conread position:81-437
               
               
               Cow position:chr4:54962424-54962794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 337

               
               
               Conread position:81-437
               
               
               Cow position:chr4:62014377-62014011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 57

               
               
               Conread position:82-275
               
               
               Cow position:chr4:34314055-34313867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:82-300
               
               
               Cow position:chr4:15813718-15813497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):140, 172

               
               
               Conread position:82-392
               
               
               Cow position:chr4:16364902-16365228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:82-426
               
               
               Cow position:chr4:52771265-52771625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):175, 113

               
               
               Conread position:82-438
               
               
               Cow position:chr4:19558350-19558711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 140

               
               
               Conread position:82-500
               
               
               Cow position:chr4:19141918-19142328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 74

               
               
               Conread position:82-570
               
               
               Cow position:chr4:9795748-9795262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):186, 175

               
               
               Conread position:83-225
               
               
               Cow position:chr4:49559686-49559544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-255
               
               
               Cow position:chr4:44049811-44049978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:83-505
               
               
               Cow position:chr4:51903225-51903662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 172

               
               
               Conread position:83-640
               
               
               Cow position:chr4:24372227-24371664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:374
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):172, 194

               
               
               Conread position:85-392
               
               
               Cow position:chr4:3129446-3129765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 179

               
               
               Conread position:85-437
               
               
               Cow position:chr4:43086446-43086081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):131, 291

               
               
               Conread position:85-461
               
               
               Cow position:chr4:480381-479996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 336

               
               
               Conread position:85-514
               
               
               Cow position:chr4:24744789-24744340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:85-601
               
               
               Cow position:chr4:3388174-3388704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:350
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):103, 180

               
               
               Conread position:86-255
               
               
               Cow position:chr4:54479551-54479388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:86-394
               
               
               Cow position:chr4:60907667-60907343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:86-446
               
               
               Cow position:chr4:11671081-11671449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 75

               
               
               Conread position:86-451
               
               
               Cow position:chr4:43909398-43909747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):177, 66

               
               
               Conread position:90-225
               
               
               Cow position:chr4:5231623-5231758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:90-392
               
               
               Cow position:chr4:29569185-29568867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:91-330
               
               
               Cow position:chr4:12657886-12658139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 181

               
               
               Conread position:91-345
               
               
               Cow position:chr4:29710410-29710139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 264

               
               
               Conread position:91-389
               
               
               Cow position:chr4:63266430-63266744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:91-607
               
               
               Cow position:chr4:11100031-11099498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:91-636
               
               
               Cow position:chr4:68233621-68234158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 51

               
               
               Conread position:92-437
               
               
               Cow position:chr4:42399626-42399267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):124, 326

               
               
               Conread position:93-229
               
               
               Cow position:chr4:11921551-11921416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:93-409
               
               
               Cow position:chr4:3990988-3990661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):168, 129

               
               
               Conread position:93-421
               
               
               Cow position:chr4:44665735-44665397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 255

               
               
               Conread position:96-449
               
               
               Cow position:chr4:22216018-22215653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:99-566
               
               
               Cow position:chr4:14944680-14945178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:100-249
               
               
               Cow position:chr4:57667800-57667947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:100-392
               
               
               Cow position:chr4:17919145-17918838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:100-644
               
               
               Cow position:chr4:13668972-13668420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 72

               
               
               Conread position:101-319
               
               
               Cow position:chr4:16814128-16813910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):160, 71

               
               
               Conread position:101-432
               
               
               Cow position:chr4:33935362-33935705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):138, 308

               
               
               Conread position:101-639
               
               
               Cow position:chr4:15904743-15905299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 82

               
               
               Conread position:102-312
               
               
               Cow position:chr4:20117204-20116990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):159, 37

               
               
               Conread position:102-358
               
               
               Cow position:chr4:26469288-26469556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:102-375
               
               
               Cow position:chr4:14742902-14743189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:102-375
               
               
               Cow position:chr4:22743972-22744252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):157, 70

               
               
               Conread position:102-381
               
               
               Cow position:chr4:1915932-1915644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):159, 79

               
               
               Conread position:102-392
               
               
               Cow position:chr4:10533866-10533562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 196

               
               
               Conread position:102-398
               
               
               Cow position:chr4:18489749-18489435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:102-398
               
               
               Cow position:chr4:42232312-42232608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 6

               
               
               Conread position:102-461
               
               
               Cow position:chr4:47056668-47057049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:102-539
               
               
               Cow position:chr4:17112235-17111783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 397

               
               
               Conread position:102-545
               
               
               Cow position:chr4:22528738-22528291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):149, 30

               
               
               Conread position:102-570
               
               
               Cow position:chr4:8947041-8947508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 167

               
               
               Conread position:102-601
               
               
               Cow position:chr4:4085486-4084952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:102-607
               
               
               Cow position:chr4:28836172-28836701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:348
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 285

               
               
               Conread position:102-644
               
               
               Cow position:chr4:40414988-40414424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 270

               
               
               Conread position:103-228
               
               
               Cow position:chr4:6459921-6459797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:103-364
               
               
               Cow position:chr4:58283453-58283178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:103-383
               
               
               Cow position:chr4:65168361-65168071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):154, 79

               
               
               Conread position:103-404
               
               
               Cow position:chr4:61215353-61215042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:103-407
               
               
               Cow position:chr4:31634901-31634610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:104-445
               
               
               Cow position:chr4:65891647-65891988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):157, 33

               
               
               Conread position:104-610
               
               
               Cow position:chr4:23647197-23646704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 18

               
               
               Conread position:105-258
               
               
               Cow position:chr4:30170730-30170581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:105-428
               
               
               Cow position:chr4:13832974-13832629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):75, 226

               
               
               Conread position:106-255
               
               
               Cow position:chr4:68941802-68941653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:106-321
               
               
               Cow position:chr4:62825843-62825635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:106-422
               
               
               Cow position:chr4:7851-7516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:106-438
               
               
               Cow position:chr4:19313652-19314001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 116

               
               
               Conread position:106-632
               
               
               Cow position:chr4:1495754-1495221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:345
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 86

               
               
               Conread position:106-638
               
               
               Cow position:chr4:21064680-21065218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 122

               
               
               Conread position:107-285
               
               
               Cow position:chr4:1499497-1499320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):152, 48

               
               
               Conread position:107-362
               
               
               Cow position:chr4:2681016-2681269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):217, 65

               
               
               Conread position:108-246
               
               
               Cow position:chr4:6413589-6413454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:108-391
               
               
               Cow position:chr4:23318927-23318629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 201

               
               
               Conread position:108-432
               
               
               Cow position:chr4:44030020-44029686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):148, 272

               
               
               Conread position:108-509
               
               
               Cow position:chr4:11187108-11187512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:108-647
               
               
               Cow position:chr4:52748811-52748248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:109-300
               
               
               Cow position:chr4:68429739-68429929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):159, 108

               
               
               Conread position:110-255
               
               
               Cow position:chr4:17186868-17186726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:110-490
               
               
               Cow position:chr4:285307-285683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:110-509
               
               
               Cow position:chr4:19265224-19265634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 112

               
               
               Conread position:110-571
               
               
               Cow position:chr4:10905805-10905335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):176, 26

               
               
               Conread position:110-644
               
               
               Cow position:chr4:44496037-44496560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:342
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:110-644
               
               
               Cow position:chr4:60897622-60897088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 327

               
               
               Conread position:112-455
               
               
               Cow position:chr4:31023099-31023458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:112-570
               
               
               Cow position:chr4:44782027-44782494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 238

               
               
               Conread position:112-573
               
               
               Cow position:chr4:45574-46027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):131, 60

               
               
               Conread position:112-644
               
               
               Cow position:chr4:62983884-62983359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:113-648
               
               
               Cow position:chr4:42424146-42423599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:114-642
               
               
               Cow position:chr4:56240191-56239662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 223

               
               
               Conread position:115-431
               
               
               Cow position:chr4:37470210-37470535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:115-607
               
               
               Cow position:chr4:10916181-10915669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 269

               
               
               Conread position:116-423
               
               
               Cow position:chr4:45239934-45240245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):143, 11

               
               
               Conread position:116-638
               
               
               Cow position:chr4:49159110-49158600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:345
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:117-255
               
               
               Cow position:chr4:54111214-54111347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:117-417
               
               
               Cow position:chr4:10016924-10016631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 55

               
               
               Conread position:117-426
               
               
               Cow position:chr4:51023373-51023062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 107

               
               
               Conread position:117-607
               
               
               Cow position:chr4:68076870-68076376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:332
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:119-580
               
               
               Cow position:chr4:68764177-68764651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):144, 131

               
               
               Conread position:122-424
               
               
               Cow position:chr4:60433200-60432882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 314

               
               
               Conread position:122-438
               
               
               Cow position:chr4:1060599-1060280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):141, 259

               
               
               Conread position:122-543
               
               
               Cow position:chr4:47351470-47351896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):107, 269

               
               
               Conread position:122-594
               
               
               Cow position:chr4:54455662-54455198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:123-403
               
               
               Cow position:chr4:63365710-63365422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:123-644
               
               
               Cow position:chr4:10412045-10412563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 59

               
               
               Conread position:124-644
               
               
               Cow position:chr4:275131-275643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:126-255
               
               
               Cow position:chr4:52979703-52979575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:126-322
               
               
               Cow position:chr4:5577823-5577614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):135, 77

               
               
               Conread position:127-363
               
               
               Cow position:chr4:4736705-4736946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:127-635
               
               
               Cow position:chr4:509230-508717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 239

               
               
               Conread position:127-636
               
               
               Cow position:chr4:22010390-22009867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:129-438
               
               
               Cow position:chr4:22741722-22741426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):270, 106

               
               
               Conread position:130-447
               
               
               Cow position:chr4:23570468-23570797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):127, 288

               
               
               Conread position:130-570
               
               
               Cow position:chr4:570467-570912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:131-392
               
               
               Cow position:chr4:21064329-21064061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:131-509
               
               
               Cow position:chr4:57584554-57584181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:132-607
               
               
               Cow position:chr4:37915656-37915175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 80

               
               
               Conread position:133-546
               
               
               Cow position:chr4:12048922-12049344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:134-357
               
               
               Cow position:chr4:21246888-21246654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):127, 5

               
               
               Conread position:135-424
               
               
               Cow position:chr4:59833611-59833922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:136-417
               
               
               Cow position:chr4:19561372-19561652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:136-438
               
               
               Cow position:chr4:23060330-23060007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):7, 285

               
               
               Conread position:136-640
               
               
               Cow position:chr4:37935604-37935098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 206

               
               
               Conread position:138-567
               
               
               Cow position:chr4:45738800-45738358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:139-605
               
               
               Cow position:chr4:19597634-19597171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:140-359
               
               
               Cow position:chr4:17200961-17201181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):121, 57

               
               
               Conread position:140-518
               
               
               Cow position:chr4:19007721-19008116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:142-438
               
               
               Cow position:chr4:32827436-32827131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:142-509
               
               
               Cow position:chr4:12033950-12034327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:142-628
               
               
               Cow position:chr4:23599856-23600351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 30

               
               
               Conread position:147-400
               
               
               Cow position:chr4:69305344-69305602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:149-363
               
               
               Cow position:chr4:47315031-47314821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):140, 54

               
               
               Conread position:152-622
               
               
               Cow position:chr4:45662807-45662325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 148

               
               
               Conread position:152-644
               
               
               Cow position:chr4:23451403-23450879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:345
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):109, 254

               
               
               Conread position:163-415
               
               
               Cow position:chr4:37828133-37827881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 138

               
               
               Conread position:166-420
               
               
               Cow position:chr4:27510978-27511235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):123, 91

               
               
               Conread position:168-545
               
               
               Cow position:chr4:19582907-19582521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:169-570
               
               
               Cow position:chr4:18095967-18095553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:172-519
               
               
               Cow position:chr4:620439-620064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:173-433
               
               
               Cow position:chr4:37342831-37343097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 189

               
               
               Conread position:173-647
               
               
               Cow position:chr4:51727797-51728275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 391

               
               
               Conread position:175-536
               
               
               Cow position:chr4:5999477-5999108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:178-420
               
               
               Cow position:chr4:51122775-51123030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 190

               
               
               Conread position:178-458
               
               
               Cow position:chr4:67408261-67408536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:178-637
               
               
               Cow position:chr4:23509309-23509789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 6

               
               
               Conread position:182-404
               
               
               Cow position:chr4:29237427-29237202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 62

               
               
               Conread position:182-431
               
               
               Cow position:chr4:15439320-15439560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):142, 20

               
               
               Conread position:183-552
               
               
               Cow position:chr4:56570529-56570909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:184-570
               
               
               Cow position:chr4:46550109-46550504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 191

               
               
               Conread position:184-644
               
               
               Cow position:chr4:59785041-59785518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 217

               
               
               Conread position:185-431
               
               
               Cow position:chr4:19542520-19542777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 199

               
               
               Conread position:185-514
               
               
               Cow position:chr4:33612637-33612293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 254

               
               
               Conread position:185-630
               
               
               Cow position:chr4:27529839-27530311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:187-439
               
               
               Cow position:chr4:63119503-63119250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:188-546
               
               
               Cow position:chr4:47348561-47348924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 61

               
               
               Conread position:188-588
               
               
               Cow position:chr4:19316268-19315863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:188-616
               
               
               Cow position:chr4:35981718-35982172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 353

               
               
               Conread position:190-394
               
               
               Cow position:chr4:42267011-42266806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):99, 67

               
               
               Conread position:190-436
               
               
               Cow position:chr4:8801234-8801495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:190-486
               
               
               Cow position:chr4:20299000-20299312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:190-509
               
               
               Cow position:chr4:17052867-17052532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:190-539
               
               
               Cow position:chr4:33395957-33395607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:190-563
               
               
               Cow position:chr4:2141477-2141851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:190-604
               
               
               Cow position:chr4:7571140-7571570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 149

               
               
               Conread position:190-640
               
               
               Cow position:chr4:28772336-28771870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 132

               
               
               Conread position:190-640
               
               
               Cow position:chr4:49629228-49629681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:303
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):195, 67

               
               
               Conread position:191-400
               
               
               Cow position:chr4:44073038-44072814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:191-404
               
               
               Cow position:chr4:54930684-54930463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:191-408
               
               
               Cow position:chr4:63349744-63349514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:191-415
               
               
               Cow position:chr4:45114874-45114638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:191-419
               
               
               Cow position:chr4:6630559-6630322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 186

               
               
               Conread position:191-438
               
               
               Cow position:chr4:1405272-1405522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:191-505
               
               
               Cow position:chr4:51739971-51739660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 215

               
               
               Conread position:191-508
               
               
               Cow position:chr4:21371132-21371451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:191-510
               
               
               Cow position:chr4:11021919-11021589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:191-547
               
               
               Cow position:chr4:34337530-34337173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:191-631
               
               
               Cow position:chr4:46456315-46455878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:191-637
               
               
               Cow position:chr4:46597115-46597564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:191-639
               
               
               Cow position:chr4:44612735-44613198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 39

               
               
               Conread position:191-644
               
               
               Cow position:chr4:19744621-19745068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 280

               
               
               Conread position:192-570
               
               
               Cow position:chr4:34630635-34631019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:192-636
               
               
               Cow position:chr4:23847318-23846864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 118

               
               
               Conread position:192-643
               
               
               Cow position:chr4:4321273-4320791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:328
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 236

               
               
               Conread position:193-404
               
               
               Cow position:chr4:54667957-54667732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:193-519
               
               
               Cow position:chr4:22345281-22344951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 175

               
               
               Conread position:193-552
               
               
               Cow position:chr4:5461119-5460759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:193-570
               
               
               Cow position:chr4:46591396-46591790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:194-403
               
               
               Cow position:chr4:21365149-21365361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:194-438
               
               
               Cow position:chr4:26746219-26746472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:194-442
               
               
               Cow position:chr4:46060681-46060936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 182

               
               
               Conread position:194-461
               
               
               Cow position:chr4:14505265-14505007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):207, 67

               
               
               Conread position:194-565
               
               
               Cow position:chr4:34641994-34641612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:194-626
               
               
               Cow position:chr4:3340686-3341140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:197-365
               
               
               Cow position:chr4:10471961-10472140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:197-438
               
               
               Cow position:chr4:49424576-49424816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 151

               
               
               Conread position:197-448
               
               
               Cow position:chr4:47289808-47290077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:197-542
               
               
               Cow position:chr4:55395506-55395855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 103

               
               
               Conread position:197-568
               
               
               Cow position:chr4:66548015-66547649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 66

               
               
               Conread position:197-607
               
               
               Cow position:chr4:23445313-23444875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:197-627
               
               
               Cow position:chr4:31348456-31348017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:197-638
               
               
               Cow position:chr4:37691570-37691108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:197-643
               
               
               Cow position:chr4:10968647-10968190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:198-421
               
               
               Cow position:chr4:51866733-51866967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:198-547
               
               
               Cow position:chr4:41867183-41867534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 178

               
               
               Conread position:198-581
               
               
               Cow position:chr4:63096336-63095944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:198-607
               
               
               Cow position:chr4:1985388-1985814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 172

               
               
               Conread position:198-616
               
               
               Cow position:chr4:34310716-34310291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 212

               
               
               Conread position:199-336
               
               
               Cow position:chr4:61066392-61066537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:199-403
               
               
               Cow position:chr4:657079-656859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:199-418
               
               
               Cow position:chr4:54975048-54975266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:199-426
               
               
               Cow position:chr4:51408225-51407993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:199-644
               
               
               Cow position:chr4:3283709-3283247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 118

               
               
               Conread position:200-374
               
               
               Cow position:chr4:2536574-2536757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:201-399
               
               
               Cow position:chr4:12260040-12259830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:201-571
               
               
               Cow position:chr4:21874573-21874923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:201-607
               
               
               Cow position:chr4:31004662-31004249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:202-461
               
               
               Cow position:chr4:33357674-33357948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:202-570
               
               
               Cow position:chr4:45367479-45367861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:203-571
               
               
               Cow position:chr4:42922102-42921737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 178

               
               
               Conread position:203-593
               
               
               Cow position:chr4:63965247-63964842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 198

               
               
               Conread position:203-600
               
               
               Cow position:chr4:62921113-62920720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 159

               
               
               Conread position:204-427
               
               
               Cow position:chr4:40410375-40410150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:205-358
               
               
               Cow position:chr4:41292234-41292066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:205-438
               
               
               Cow position:chr4:5630007-5629762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 230

               
               
               Conread position:205-565
               
               
               Cow position:chr4:20157667-20157299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:205-565
               
               
               Cow position:chr4:49089540-49089901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):58, 121

               
               
               Conread position:205-644
               
               
               Cow position:chr4:12676559-12676994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:294
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:207-449
               
               
               Cow position:chr4:18577029-18576770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:207-638
               
               
               Cow position:chr4:14414598-14414162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 178

               
               
               Conread position:208-586
               
               
               Cow position:chr4:7808327-7808713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:208-626
               
               
               Cow position:chr4:13255845-13256262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:209-398
               
               
               Cow position:chr4:53447916-53447718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 165

               
               
               Conread position:209-414
               
               
               Cow position:chr4:59565290-59565506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 201

               
               
               Conread position:209-446
               
               
               Cow position:chr4:65538659-65538420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 207

               
               
               Conread position:210-590
               
               
               Cow position:chr4:19322328-19321935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 350

               
               
               Conread position:211-404
               
               
               Cow position:chr4:11496860-11496675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:212-538
               
               
               Cow position:chr4:21233118-21232783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 204

               
               
               Conread position:212-644
               
               
               Cow position:chr4:29291275-29291703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 197

               
               
               Conread position:213-445
               
               
               Cow position:chr4:11897545-11897299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:214-399
               
               
               Cow position:chr4:46370565-46370766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):45, 183

               
               
               Conread position:214-642
               
               
               Cow position:chr4:26659060-26659496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:216-568
               
               
               Cow position:chr4:64192414-64192068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):129, 47

               
               
               Conread position:223-383
               
               
               Cow position:chr4:13871693-13871853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:224-373
               
               
               Cow position:chr4:20502419-20502569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:225-452
               
               
               Cow position:chr4:41908026-41907798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 162

               
               
               Conread position:232-398
               
               
               Cow position:chr4:44902216-44902386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:233-546
               
               
               Cow position:chr4:22860932-22860613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:235-514
               
               
               Cow position:chr4:44973418-44973700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 172

               
               
               Conread position:246-403
               
               
               Cow position:chr4:61148391-61148551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:246-432
               
               
               Cow position:chr4:46552520-46552340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:252-467
               
               
               Cow position:chr4:56435612-56435822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):132, 148

               
               
               Conread position:257-358
               
               
               Cow position:chr4:33062723-33062823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:257-627
               
               
               Cow position:chr4:9681110-9681486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:258-437
               
               
               Cow position:chr4:5553979-5553796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:258-438
               
               
               Cow position:chr4:34924879-34924701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 87

               
               
               Conread position:258-460
               
               
               Cow position:chr4:44956376-44956171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:258-510
               
               
               Cow position:chr4:65431956-65432212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 74

               
               
               Conread position:258-547
               
               
               Cow position:chr4:54111557-54111840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):84, 146

               
               
               Conread position:258-552
               
               
               Cow position:chr4:32726036-32726327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):234, 143

               
               
               Conread position:258-552
               
               
               Cow position:chr4:59277666-59277376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:258-565
               
               
               Cow position:chr4:65175329-65175030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:258-568
               
               
               Cow position:chr4:2602044-2602350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:258-569
               
               
               Cow position:chr4:16593897-16594203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:258-569
               
               
               Cow position:chr4:19408186-19407879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:258-570
               
               
               Cow position:chr4:30791778-30792088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 126

               
               
               Conread position:258-570
               
               
               Cow position:chr4:58881153-58880838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:258-571
               
               
               Cow position:chr4:19699916-19700220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 142

               
               
               Conread position:258-572
               
               
               Cow position:chr4:16762918-16762604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:258-593
               
               
               Cow position:chr4:203332-202993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):183, 141

               
               
               Conread position:258-636
               
               
               Cow position:chr4:12127829-12127449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:258-636
               
               
               Cow position:chr4:13941273-13941639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:258-640
               
               
               Cow position:chr4:25356492-25356121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):270, 50

               
               
               Conread position:258-640
               
               
               Cow position:chr4:38944451-38944068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 209

               
               
               Conread position:258-644
               
               
               Cow position:chr4:85509-85893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):141, 36

               
               
               Conread position:258-644
               
               
               Cow position:chr4:65824219-65824616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 151

               
               
               Conread position:260-593
               
               
               Cow position:chr4:13344357-13344685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:261-399
               
               
               Cow position:chr4:20842737-20842874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:261-399
               
               
               Cow position:chr4:45574818-45574955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:261-417
               
               
               Cow position:chr4:43515539-43515695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):115, 125

               
               
               Conread position:261-421
               
               
               Cow position:chr4:39767162-39767326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:261-432
               
               
               Cow position:chr4:26541551-26541724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 122

               
               
               Conread position:261-467
               
               
               Cow position:chr4:14964594-14964796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):138, 63

               
               
               Conread position:261-486
               
               
               Cow position:chr4:19463308-19463533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):194, 189

               
               
               Conread position:261-544
               
               
               Cow position:chr4:13974155-13973874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):176, 28

               
               
               Conread position:261-570
               
               
               Cow position:chr4:59377726-59378031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:261-571
               
               
               Cow position:chr4:13222359-13222064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):231, 15

               
               
               Conread position:261-573
               
               
               Cow position:chr4:48961667-48961361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 109

               
               
               Conread position:261-637
               
               
               Cow position:chr4:24810626-24810260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):267, 30

               
               
               Conread position:261-644
               
               
               Cow position:chr4:51768929-51769319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:262-372
               
               
               Cow position:chr4:51083544-51083434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:262-408
               
               
               Cow position:chr4:23911772-23911623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:262-413
               
               
               Cow position:chr4:43749994-43749844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):145, 136

               
               
               Conread position:262-429
               
               
               Cow position:chr4:54851306-54851138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 159

               
               
               Conread position:262-445
               
               
               Cow position:chr4:21275889-21276069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:262-518
               
               
               Cow position:chr4:27664823-27665083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 175

               
               
               Conread position:262-604
               
               
               Cow position:chr4:1026411-1026075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 100

               
               
               Conread position:262-636
               
               
               Cow position:chr4:22713677-22713295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):62, 138

               
               
               Conread position:262-640
               
               
               Cow position:chr4:36929131-36929487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):369, 139

               
               
               Conread position:263-509
               
               
               Cow position:chr4:4843433-4843183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:263-588
               
               
               Cow position:chr4:56590849-56591184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 213

               
               
               Conread position:264-518
               
               
               Cow position:chr4:29106719-29106977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 136

               
               
               Conread position:264-643
               
               
               Cow position:chr4:11218574-11218951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 125

               
               
               Conread position:265-520
               
               
               Cow position:chr4:11331909-11332169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:265-605
               
               
               Cow position:chr4:45077252-45076918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):164, 36

               
               
               Conread position:266-399
               
               
               Cow position:chr4:25359425-25359561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:266-420
               
               
               Cow position:chr4:27687740-27687896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):5, 144

               
               
               Conread position:266-569
               
               
               Cow position:chr4:31506214-31505903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):134, 300

               
               
               Conread position:266-601
               
               
               Cow position:chr4:17186535-17186192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 179

               
               
               Conread position:269-593
               
               
               Cow position:chr4:34022766-34022437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 309

               
               
               Conread position:270-490
               
               
               Cow position:chr4:3689530-3689745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):131, 81

               
               
               Conread position:274-409
               
               
               Cow position:chr4:46720338-46720199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:274-422
               
               
               Cow position:chr4:38887311-38887157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:274-571
               
               
               Cow position:chr4:54479078-54478797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):218, 82

               
               
               Conread position:274-644
               
               
               Cow position:chr4:28839451-28839813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 127

               
               
               Conread position:275-610
               
               
               Cow position:chr4:48321851-48322203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:277-569
               
               
               Cow position:chr4:41371111-41370820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:279-446
               
               
               Cow position:chr4:36724869-36725038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:279-518
               
               
               Cow position:chr4:2885713-2885470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:279-522
               
               
               Cow position:chr4:27632284-27632517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):212, 17

               
               
               Conread position:279-570
               
               
               Cow position:chr4:20147016-20147305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:280-605
               
               
               Cow position:chr4:16881531-16881209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):177, 121

               
               
               Conread position:281-571
               
               
               Cow position:chr4:10378941-10379234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 271

               
               
               Conread position:281-648
               
               
               Cow position:chr4:17774521-17774150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 317

               
               
               Conread position:283-519
               
               
               Cow position:chr4:45711204-45711434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):196, 97

               
               
               Conread position:283-646
               
               
               Cow position:chr4:19501249-19500884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):209, 60

               
               
               Conread position:288-641
               
               
               Cow position:chr4:36290468-36290817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 114

               
               
               Conread position:295-626
               
               
               Cow position:chr4:44449659-44449340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:296-593
               
               
               Cow position:chr4:19118854-19119168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:298-470
               
               
               Cow position:chr4:47047743-47047916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:301-607
               
               
               Cow position:chr4:48409413-48409122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):127, 42

               
               
               Conread position:303-606
               
               
               Cow position:chr4:20184568-20184846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:304-571
               
               
               Cow position:chr4:48396938-48396673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:305-621
               
               
               Cow position:chr4:37313027-37313349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):186, 33

               
               
               Conread position:312-568
               
               
               Cow position:chr4:54927576-54927322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:312-607
               
               
               Cow position:chr4:25537409-25537713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):91, 207

               
               
               Conread position:312-638
               
               
               Cow position:chr4:52779716-52780037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):179, 89

               
               
               Conread position:314-594
               
               
               Cow position:chr4:68889691-68889421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:317-633
               
               
               Cow position:chr4:52832149-52831822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:318-578
               
               
               Cow position:chr4:48173008-48173270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 74

               
               
               Conread position:320-607
               
               
               Cow position:chr4:1419094-1419387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):90, 144

               
               
               Conread position:322-636
               
               
               Cow position:chr4:34700164-34699849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 154

               
               
               Conread position:322-642
               
               
               Cow position:chr4:19578277-19578593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:324-519
               
               
               Cow position:chr4:13026176-13026375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:332-629
               
               
               Cow position:chr4:38157207-38156910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):74, 220

               
               
               Conread position:333-605
               
               
               Cow position:chr4:213904-214174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:334-571
               
               
               Cow position:chr4:17084455-17084212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:351-640
               
               
               Cow position:chr4:46566572-46566277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 260

               
               
               Conread position:353-566
               
               
               Cow position:chr4:34503197-34503412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):118, 204

               
               
               Conread position:361-545
               
               
               Cow position:chr4:49826166-49826348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:362-552
               
               
               Cow position:chr4:66136691-66136505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:368-522
               
               
               Cow position:chr4:19493472-19493629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:369-607
               
               
               Cow position:chr4:59002213-59001975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:369-637
               
               
               Cow position:chr4:34509761-34510035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:370-626
               
               
               Cow position:chr4:60719021-60719287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:374-568
               
               
               Cow position:chr4:10851525-10851327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:378-543
               
               
               Cow position:chr4:61478531-61478700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:378-570
               
               
               Cow position:chr4:19323902-19324096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):26, 173

               
               
               Conread position:378-607
               
               
               Cow position:chr4:48422805-48423031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):23, 161

               
               
               Conread position:381-571
               
               
               Cow position:chr4:54541708-54541516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:383-616
               
               
               Cow position:chr4:17851318-17851086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:383-648
               
               
               Cow position:chr4:28701289-28701554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:389-571
               
               
               Cow position:chr4:65131514-65131329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:394-569
               
               
               Cow position:chr4:60506221-60506394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 83

               
               
               Conread position:394-606
               
               
               Cow position:chr4:65173047-65173264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:401-605
               
               
               Cow position:chr4:10558488-10558698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:414-607
               
               
               Cow position:chr4:5727809-5727994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:415-616
               
               
               Cow position:chr4:34653903-34653701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:423-627
               
               
               Cow position:chr4:26901301-26901507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 127
Show alignments to all cow chromosomes.
Conread position:	20-255
Cow position:	chr4:7810218-7810453 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	157
Alignm E-value:	9e-28
Alignm gaps (pig, cow):	0, 0
Conread position:	21-570
Cow position:	chr4:65650561-65650013 (view UCSC Genome Browser custom track)
Alignm length:	566
Alignm identity:	374
Alignm E-value:	0
Alignm gaps (pig, cow):	33, 162
Conread position:	33-446
Cow position:	chr4:242801-243228 (view UCSC Genome Browser custom track)
Alignm length:	432
Alignm identity:	283
Alignm E-value:	9e-39
Alignm gaps (pig, cow):	222, 45
Conread position:	35-358
Cow position:	chr4:24198218-24197894 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	224
Alignm E-value:	5e-34
Alignm gaps (pig, cow):	42, 163
Conread position:	41-337
Cow position:	chr4:44573167-44573450 (view UCSC Genome Browser custom track)
Alignm length:	300
Alignm identity:	199
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	191, 36
Conread position:	41-648
Cow position:	chr4:21873778-21874382 (view UCSC Genome Browser custom track)
Alignm length:	626
Alignm identity:	427
Alignm E-value:	0
Alignm gaps (pig, cow):	43, 9
Conread position:	44-425
Cow position:	chr4:19237829-19238213 (view UCSC Genome Browser custom track)
Alignm length:	396
Alignm identity:	268
Alignm E-value:	7e-37
Alignm gaps (pig, cow):	217, 35
Conread position:	46-550
Cow position:	chr4:41602465-41602951 (view UCSC Genome Browser custom track)
Alignm length:	509
Alignm identity:	333
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	251, 19
Conread position:	49-409
Cow position:	chr4:14159531-14159164 (view UCSC Genome Browser custom track)
Alignm length:	372
Alignm identity:	258
Alignm E-value:	0
Alignm gaps (pig, cow):	210, 21
Conread position:	50-255
Cow position:	chr4:42278645-42278435 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	152
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	27, 0
Conread position:	51-383
Cow position:	chr4:12697239-12697575 (view UCSC Genome Browser custom track)
Alignm length:	344
Alignm identity:	228
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	118, 6
Conread position:	51-398
Cow position:	chr4:2244395-2244036 (view UCSC Genome Browser custom track)
Alignm length:	363
Alignm identity:	239
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	173, 21
Conread position:	52-394
Cow position:	chr4:16339993-16339653 (view UCSC Genome Browser custom track)
Alignm length:	356
Alignm identity:	243
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	204, 24
Conread position:	53-362
Cow position:	chr4:38799600-38799278 (view UCSC Genome Browser custom track)
Alignm length:	326
Alignm identity:	229
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	24, 169
Conread position:	54-346
Cow position:	chr4:24671582-24671275 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	217
Alignm E-value:	3e-38
Alignm gaps (pig, cow):	47, 134
Conread position:	54-417
Cow position:	chr4:28378051-28377692 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	246
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	20, 36
Conread position:	55-392
Cow position:	chr4:54695479-54695131 (view UCSC Genome Browser custom track)
Alignm length:	354
Alignm identity:	233
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	165, 14
Conread position:	56-255
Cow position:	chr4:1736887-1737085 (view UCSC Genome Browser custom track)
Alignm length:	202
Alignm identity:	141
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	19, 30
Conread position:	56-317
Cow position:	chr4:59118556-59118273 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	200
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	18, 41
Conread position:	56-323
Cow position:	chr4:42863972-42864242 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	184
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	19, 133