Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8009J20.3 |
| Conread position: | 6-235 |
| Cow position: | chr12:6729026-6729252 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 128, 24 |
| Conread position: | 10-235 |
| Cow position: | chr12:9848800-9848580 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 211, 96 |
| Conread position: | 11-230 |
| Cow position: | chr12:36281755-36281543 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 13-211 |
| Cow position: | chr12:20368667-20368864 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 120, 105 |
| Conread position: | 13-211 |
| Cow position: | chr12:36283526-36283720 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 13-223 |
| Cow position: | chr12:5912100-5912314 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 123 |
| Conread position: | 13-228 |
| Cow position: | chr12:9129360-9129141 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 121, 178 |
| Conread position: | 13-234 |
| Cow position: | chr12:311439-311221 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 69 |
| Conread position: | 13-235 |
| Cow position: | chr12:10224754-10224970 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 208, 8 |
| Conread position: | 13-235 |
| Cow position: | chr12:17736716-17736508 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 13-235 |
| Cow position: | chr12:27107041-27106816 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 180 |
| Conread position: | 13-269 |
| Cow position: | chr12:29951246-29950988 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 70 |
| Conread position: | 13-275 |
| Cow position: | chr12:27607256-27606998 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 117, 179 |
| Conread position: | 13-282 |
| Cow position: | chr12:1397919-1398198 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 200, 86 |
| Conread position: | 16-216 |
| Cow position: | chr12:30442999-30442799 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 114, 173 |
| Conread position: | 17-200 |
| Cow position: | chr12:43964485-43964304 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 17-240 |
| Cow position: | chr12:44917093-44916871 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 199, 105 |
| Conread position: | 19-235 |
| Cow position: | chr12:7280425-7280639 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 202, 55 |
| Conread position: | 32-195 |
| Cow position: | chr12:734693-734857 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 99 |
| Conread position: | 40-277 |
| Cow position: | chr12:9394370-9394113 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 49-275 |
| Cow position: | chr12:16135845-16135619 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 49-277 |
| Cow position: | chr12:30612676-30612909 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 52-235 |
| Cow position: | chr12:9796498-9796677 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 170, 70 |
| Conread position: | 60-279 |
| Cow position: | chr12:10886713-10886492 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 63-235 |
| Cow position: | chr12:3126943-3127121 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 63-235 |
| Cow position: | chr12:21789512-21789338 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 63-277 |
| Cow position: | chr12:29285309-29285100 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 158, 49 |
| Conread position: | 65-279 |
| Cow position: | chr12:21109523-21109741 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 41, 129 |
| Conread position: | 71-235 |
| Cow position: | chr12:9530122-9529955 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 61, 119 |
| Conread position: | 71-235 |
| Cow position: | chr12:26969630-26969796 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 45 |
Show alignments to all cow chromosomes.