Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8009J20.3 |
| Conread position: | 1-230 |
| Cow position: | chr13:60815573-60815342 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 189 |
| Conread position: | 6-240 |
| Cow position: | chr13:14877554-14877331 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 214, 110 |
| Conread position: | 10-230 |
| Cow position: | chr13:51669218-51669445 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 108, 154 |
| Conread position: | 10-233 |
| Cow position: | chr13:2343230-2343015 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 211, 21 |
| Conread position: | 12-235 |
| Cow position: | chr13:60613636-60613853 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 209, 110 |
| Conread position: | 13-170 |
| Cow position: | chr13:16941201-16941358 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 13-187 |
| Cow position: | chr13:34036940-34036769 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 13-213 |
| Cow position: | chr13:40131318-40131120 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 13-230 |
| Cow position: | chr13:26528982-26529201 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 113, 176 |
| Conread position: | 13-230 |
| Cow position: | chr13:56879804-56880015 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 13-234 |
| Cow position: | chr13:21902654-21902447 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 208, 74 |
| Conread position: | 13-234 |
| Cow position: | chr13:40541994-40541766 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 109, 181 |
| Conread position: | 13-235 |
| Cow position: | chr13:9627381-9627157 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 119, 57 |
| Conread position: | 13-235 |
| Cow position: | chr13:10848903-10849124 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 208, 108 |
| Conread position: | 13-235 |
| Cow position: | chr13:16977278-16977053 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 117, 145 |
| Conread position: | 13-235 |
| Cow position: | chr13:18940655-18940884 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 120, 181 |
| Conread position: | 13-235 |
| Cow position: | chr13:26171085-26170864 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 13-235 |
| Cow position: | chr13:40439031-40439257 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 108, 178 |
| Conread position: | 13-240 |
| Cow position: | chr13:55183455-55183679 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 207, 95 |
| Conread position: | 13-246 |
| Cow position: | chr13:48486648-48486411 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 13-274 |
| Cow position: | chr13:40210990-40211237 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 158 |
| Conread position: | 13-277 |
| Cow position: | chr13:16747759-16747492 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 177 |
| Conread position: | 13-277 |
| Cow position: | chr13:44120284-44120549 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 13-292 |
| Cow position: | chr13:12238527-12238820 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 16-230 |
| Cow position: | chr13:18424829-18425041 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 205, 106 |
| Conread position: | 31-277 |
| Cow position: | chr13:46408429-46408195 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 192, 70 |
| Conread position: | 32-241 |
| Cow position: | chr13:44660449-44660247 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 123 |
| Conread position: | 32-277 |
| Cow position: | chr13:43780932-43781191 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 124 |
| Conread position: | 38-240 |
| Cow position: | chr13:41732970-41732782 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 39-235 |
| Cow position: | chr13:26214825-26214626 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 94, 151 |
| Conread position: | 39-276 |
| Cow position: | chr13:8365767-8366008 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 71, 158 |
| Conread position: | 52-284 |
| Cow position: | chr13:53809701-53809453 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 53-235 |
| Cow position: | chr13:17804330-17804155 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 168, 46 |
| Conread position: | 60-279 |
| Cow position: | chr13:24675334-24675132 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 65-235 |
| Cow position: | chr13:20272678-20272841 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 156, 50 |
| Conread position: | 70-187 |
| Cow position: | chr13:13523209-13523325 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 70-235 |
| Cow position: | chr13:20033567-20033398 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 128 |
| Conread position: | 73-235 |
| Cow position: | chr13:9622932-9623097 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 115 |
| Conread position: | 74-235 |
| Cow position: | chr13:4811067-4810910 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 147, 44 |
| Conread position: | 103-297 |
| Cow position: | chr13:51261650-51261457 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 117, 35 |
Show alignments to all cow chromosomes.