Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8009J20.3 |
| Conread position: | 10-187 |
| Cow position: | chr15:38376233-38376411 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 13-179 |
| Cow position: | chr15:19932900-19933064 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 13-185 |
| Cow position: | chr15:31560934-31560763 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 13-187 |
| Cow position: | chr15:31520815-31520641 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-230 |
| Cow position: | chr15:8570795-8570575 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 13-235 |
| Cow position: | chr15:6853054-6853275 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 194, 107 |
| Conread position: | 13-235 |
| Cow position: | chr15:8668664-8668885 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 121, 86 |
| Conread position: | 13-235 |
| Cow position: | chr15:10955314-10955523 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 209, 32 |
| Conread position: | 13-235 |
| Cow position: | chr15:13592777-13593005 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 13-235 |
| Cow position: | chr15:16524567-16524789 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 13-235 |
| Cow position: | chr15:36737868-36738090 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 203, 117 |
| Conread position: | 13-235 |
| Cow position: | chr15:46095330-46095556 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 120, 178 |
| Conread position: | 13-240 |
| Cow position: | chr15:15715517-15715740 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 208, 108 |
| Conread position: | 13-258 |
| Cow position: | chr15:16060405-16060166 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 208, 60 |
| Conread position: | 13-277 |
| Cow position: | chr15:17859407-17859681 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 117, 177 |
| Conread position: | 13-287 |
| Cow position: | chr15:8621098-8621380 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 209, 61 |
| Conread position: | 13-302 |
| Cow position: | chr15:8018099-8018384 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 113 |
| Conread position: | 16-198 |
| Cow position: | chr15:50673157-50672967 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 16-258 |
| Cow position: | chr15:16027340-16027099 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 198, 114 |
| Conread position: | 16-277 |
| Cow position: | chr15:10277793-10277527 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 17-235 |
| Cow position: | chr15:45288733-45288515 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 42, 148 |
| Conread position: | 18-235 |
| Cow position: | chr15:16532567-16532361 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 203, 27 |
| Conread position: | 25-235 |
| Cow position: | chr15:11808777-11808572 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 191, 5 |
| Conread position: | 39-235 |
| Cow position: | chr15:12708267-12708069 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 125, 87 |
| Conread position: | 40-235 |
| Cow position: | chr15:1812687-1812497 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 181, 11 |
| Conread position: | 44-279 |
| Cow position: | chr15:2828972-2829211 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 106, 145 |
| Conread position: | 50-235 |
| Cow position: | chr15:42426023-42425832 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 146 |
| Conread position: | 64-277 |
| Cow position: | chr15:2102636-2102848 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 157, 62 |
| Conread position: | 65-289 |
| Cow position: | chr15:19167090-19167330 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 101-275 |
| Cow position: | chr15:6325063-6325233 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 101-287 |
| Cow position: | chr15:16279153-16278971 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 35 |
Show alignments to all cow chromosomes.