Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8009J20.3 |
| Conread position: | 11-234 |
| Cow position: | chr16:5742136-5742356 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 123, 90 |
| Conread position: | 11-279 |
| Cow position: | chr16:8292675-8292399 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 178, 61 |
| Conread position: | 13-177 |
| Cow position: | chr16:56980389-56980231 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 13-187 |
| Cow position: | chr16:30292163-30291991 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 13-230 |
| Cow position: | chr16:45709509-45709711 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 208, 42 |
| Conread position: | 13-233 |
| Cow position: | chr16:16622688-16622912 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 13-233 |
| Cow position: | chr16:18496768-18496991 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 117, 177 |
| Conread position: | 13-234 |
| Cow position: | chr16:12862384-12862611 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 116, 183 |
| Conread position: | 13-234 |
| Cow position: | chr16:52883250-52883466 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 24 |
| Conread position: | 13-235 |
| Cow position: | chr16:26816736-26816511 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 109, 14 |
| Conread position: | 13-240 |
| Cow position: | chr16:12005308-12005089 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 208, 42 |
| Conread position: | 13-277 |
| Cow position: | chr16:39007784-39008042 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 13-285 |
| Cow position: | chr16:9556602-9556318 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 56, 186 |
| Conread position: | 13-316 |
| Cow position: | chr16:39240340-39240047 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 71 |
| Conread position: | 14-180 |
| Cow position: | chr16:30327456-30327629 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 15-277 |
| Cow position: | chr16:39260170-39259907 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 16-235 |
| Cow position: | chr16:2422064-2422284 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 92, 111 |
| Conread position: | 16-235 |
| Cow position: | chr16:35484028-35483819 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 16-279 |
| Cow position: | chr16:43327765-43328034 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 177 |
| Conread position: | 17-179 |
| Cow position: | chr16:12821009-12820849 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 17-235 |
| Cow position: | chr16:11213173-11212954 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 204, 171 |
| Conread position: | 18-294 |
| Cow position: | chr16:36914147-36913858 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 184, 98 |
| Conread position: | 19-275 |
| Cow position: | chr16:17935122-17934861 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 111, 59 |
| Conread position: | 32-229 |
| Cow position: | chr16:54639830-54640021 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 189, 75 |
| Conread position: | 32-284 |
| Cow position: | chr16:52138952-52139211 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 164, 82 |
| Conread position: | 38-235 |
| Cow position: | chr16:5252281-5252083 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 21 |
| Conread position: | 39-235 |
| Cow position: | chr16:51971025-51971223 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 46-235 |
| Cow position: | chr16:37384531-37384721 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 60-235 |
| Cow position: | chr16:41660798-41660621 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 74, 129 |
| Conread position: | 60-235 |
| Cow position: | chr16:52772561-52772737 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 132 |
| Conread position: | 60-240 |
| Cow position: | chr16:16023233-16023054 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 161, 66 |
| Conread position: | 63-235 |
| Cow position: | chr16:20381815-20381645 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 63-277 |
| Cow position: | chr16:9183030-9183235 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 63-277 |
| Cow position: | chr16:31219630-31219844 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 65-235 |
| Cow position: | chr16:27046268-27046096 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 125 |
| Conread position: | 72-235 |
| Cow position: | chr16:9733053-9732888 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 77-235 |
| Cow position: | chr16:29568810-29568651 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 87-277 |
| Cow position: | chr16:55878641-55878450 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 87-295 |
| Cow position: | chr16:8732739-8732952 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 29, 110 |
| Conread position: | 88-230 |
| Cow position: | chr16:8074130-8074277 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 104 |
Show alignments to all cow chromosomes.