Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8009J20.3 |
| Conread position: | 2-235 |
| Cow position: | chr21:14982254-14982483 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 219, 167 |
| Conread position: | 11-235 |
| Cow position: | chr21:11309450-11309229 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 67 |
| Conread position: | 11-311 |
| Cow position: | chr21:3647665-3647965 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 48 |
| Conread position: | 13-152 |
| Cow position: | chr21:17922789-17922650 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 117, 72 |
| Conread position: | 13-179 |
| Cow position: | chr21:8300709-8300544 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 13-181 |
| Cow position: | chr21:19942180-19942346 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 13-230 |
| Cow position: | chr21:14852032-14852249 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 13-235 |
| Cow position: | chr21:8884207-8883976 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 105, 50 |
| Conread position: | 13-235 |
| Cow position: | chr21:9374932-9375157 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 106, 180 |
| Conread position: | 13-235 |
| Cow position: | chr21:11736179-11736406 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 13-235 |
| Cow position: | chr21:17639657-17639432 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 78 |
| Conread position: | 13-235 |
| Cow position: | chr21:30813396-30813615 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 208, 24 |
| Conread position: | 13-240 |
| Cow position: | chr21:8333684-8333464 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 13-240 |
| Cow position: | chr21:38265750-38265517 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 157, 103 |
| Conread position: | 13-273 |
| Cow position: | chr21:37673735-37673992 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 117, 142 |
| Conread position: | 13-277 |
| Cow position: | chr21:11725032-11725311 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 180, 86 |
| Conread position: | 13-277 |
| Cow position: | chr21:18549888-18549630 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 115, 174 |
| Conread position: | 13-277 |
| Cow position: | chr21:18562523-18562779 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 13-277 |
| Cow position: | chr21:18700152-18700424 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 13-289 |
| Cow position: | chr21:10962666-10962951 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 208, 39 |
| Conread position: | 14-230 |
| Cow position: | chr21:2541839-2541623 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 112, 23 |
| Conread position: | 16-235 |
| Cow position: | chr21:19536676-19536451 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 177 |
| Conread position: | 16-294 |
| Cow position: | chr21:18978608-18978889 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 17-231 |
| Cow position: | chr21:11281580-11281363 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 111, 173 |
| Conread position: | 17-238 |
| Cow position: | chr21:36741068-36740854 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 17-279 |
| Cow position: | chr21:11879596-11879850 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 204, 36 |
| Conread position: | 18-235 |
| Cow position: | chr21:9234521-9234305 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 115, 65 |
| Conread position: | 20-212 |
| Cow position: | chr21:7116041-7116237 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 110, 98 |
| Conread position: | 24-291 |
| Cow position: | chr21:19468615-19468351 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 32-235 |
| Cow position: | chr21:47728190-47727984 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 38-235 |
| Cow position: | chr21:20295780-20295595 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 183, 36 |
| Conread position: | 38-240 |
| Cow position: | chr21:17155367-17155566 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 38-240 |
| Cow position: | chr21:38057130-38057336 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 92, 85 |
| Conread position: | 38-301 |
| Cow position: | chr21:11204304-11204587 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 92, 151 |
| Conread position: | 39-240 |
| Cow position: | chr21:8865508-8865712 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 92, 154 |
| Conread position: | 41-303 |
| Cow position: | chr21:11544322-11544599 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 76, 229 |
| Conread position: | 44-230 |
| Cow position: | chr21:17007463-17007640 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 178, 66 |
| Conread position: | 46-280 |
| Cow position: | chr21:40451-40675 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 48-235 |
| Cow position: | chr21:18712681-18712873 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 49-291 |
| Cow position: | chr21:19578690-19578931 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 172, 70 |
| Conread position: | 50-235 |
| Cow position: | chr21:31172808-31172624 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 60-277 |
| Cow position: | chr21:19925075-19924855 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 74, 130 |
| Conread position: | 60-277 |
| Cow position: | chr21:20053881-20054101 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 74, 130 |
| Conread position: | 63-235 |
| Cow position: | chr21:165226-165399 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 63-235 |
| Cow position: | chr21:11054807-11054985 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 63-235 |
| Cow position: | chr21:17888204-17888028 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 135 |
| Conread position: | 63-240 |
| Cow position: | chr21:13485032-13485208 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 158, 66 |
| Conread position: | 63-279 |
| Cow position: | chr21:17827822-17828052 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 64-235 |
| Cow position: | chr21:19894136-19893966 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 157, 61 |
| Conread position: | 64-240 |
| Cow position: | chr21:16772361-16772184 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 64-277 |
| Cow position: | chr21:21405858-21405654 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 69-277 |
| Cow position: | chr21:10453097-10452884 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 116, 53 |
| Conread position: | 71-235 |
| Cow position: | chr21:43781751-43781919 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 72-235 |
| Cow position: | chr21:22119190-22119353 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 149, 39 |
| Conread position: | 73-234 |
| Cow position: | chr21:26701900-26702060 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 76-229 |
| Cow position: | chr21:10797159-10797307 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 88-277 |
| Cow position: | chr21:38537576-38537400 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 89-277 |
| Cow position: | chr21:36687275-36687085 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 102 |
| Conread position: | 101-235 |
| Cow position: | chr21:16496829-16496961 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 123-287 |
| Cow position: | chr21:43263848-43264008 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 129-235 |
| Cow position: | chr21:8218778-8218885 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 59 |
Show alignments to all cow chromosomes.