Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 3-787 |
| Cow position: | chr13:56292643-56291864 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 474 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 85, 95 |
| Conread position: | 7-666 |
| Cow position: | chr13:56292471-56291816 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 405 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 139, 252 |
| Conread position: | 7-826 |
| Cow position: | chr13:56292723-56291910 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 7-832 |
| Cow position: | chr13:22124734-22125559 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 747 |
| Conread position: | 7-832 |
| Cow position: | chr13:24162460-24163285 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 253 |
| Conread position: | 8-528 |
| Cow position: | chr13:39984379-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 9-764 |
| Cow position: | chr13:22125157-22125912 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 324 |
| Conread position: | 10-524 |
| Cow position: | chr13:22125410-22125924 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 10-524 |
| Cow position: | chr13:24163136-24163650 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 10-764 |
| Cow position: | chr13:24162884-24163638 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 323 |
| Conread position: | 10-832 |
| Cow position: | chr13:22125074-22125895 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 10-832 |
| Cow position: | chr13:24162800-24163621 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 11-479 |
| Cow position: | chr13:39930710-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 11-576 |
| Cow position: | chr13:56333694-56334268 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 345 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 158, 146 |
| Conread position: | 11-692 |
| Cow position: | chr13:22125243-22125924 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 242 |
| Conread position: | 11-692 |
| Cow position: | chr13:24162969-24163650 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 242 |
| Conread position: | 11-784 |
| Cow position: | chr13:39984130-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 11-786 |
| Cow position: | chr13:39984046-39984821 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 11-790 |
| Cow position: | chr13:22124823-22125602 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 248 |
| Conread position: | 11-790 |
| Cow position: | chr13:24162549-24163328 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 247 |
| Conread position: | 11-799 |
| Cow position: | chr13:22124991-22125776 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 11-799 |
| Cow position: | chr13:24162717-24163502 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 14-563 |
| Cow position: | chr13:39930629-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 15-790 |
| Cow position: | chr13:22124911-22125686 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 15-790 |
| Cow position: | chr13:24162637-24163412 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 20-786 |
| Cow position: | chr13:39983971-39984737 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 76 |
| Conread position: | 41-435 |
| Cow position: | chr13:56292187-56291795 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 329, 31 |
| Conread position: | 45-645 |
| Cow position: | chr13:39930576-39931174 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 53-832 |
| Cow position: | chr13:22124697-22125475 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 206 |
| Conread position: | 53-832 |
| Cow position: | chr13:24162423-24163201 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 120 |
| Conread position: | 72-829 |
| Cow position: | chr13:56333503-56334268 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 445 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 105, 83 |
| Conread position: | 95-660 |
| Cow position: | chr13:56333694-56334268 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 333, 322 |
| Conread position: | 107-876 |
| Cow position: | chr13:39983722-39984491 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 440 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 756, 700 |
| Conread position: | 113-786 |
| Cow position: | chr13:39983812-39984485 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 125-878 |
| Cow position: | chr13:39983908-39984661 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 632, 624 |
| Conread position: | 137-731 |
| Cow position: | chr13:39930584-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 188-732 |
| Cow position: | chr13:56292874-56292334 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 317 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 222-780 |
| Cow position: | chr13:39930585-39931143 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 224-776 |
| Cow position: | chr13:56292332-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 209, 134 |
| Conread position: | 297-790 |
| Cow position: | chr13:39930576-39931069 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 299-790 |
| Cow position: | chr13:22124691-22125182 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 380 |
| Conread position: | 299-790 |
| Cow position: | chr13:24162417-24162908 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 126 |
| Conread position: | 389-835 |
| Cow position: | chr13:24162423-24162868 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 43, 39 |
Show alignments to all cow chromosomes.