Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 1-658 |
| Cow position: | chr17:22589879-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 239 |
| Conread position: | 2-797 |
| Cow position: | chr17:22590298-22589503 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 144 |
| Conread position: | 2-826 |
| Cow position: | chr17:22552964-22552141 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 257 |
| Conread position: | 3-461 |
| Cow position: | chr17:44467917-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 161 |
| Conread position: | 3-549 |
| Cow position: | chr17:41440730-41440184 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 3-742 |
| Cow position: | chr17:22589961-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 408 |
| Conread position: | 3-773 |
| Cow position: | chr17:41440982-41440212 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 116 |
| Conread position: | 3-783 |
| Cow position: | chr17:41441066-41440286 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 255 |
| Conread position: | 5-486 |
| Cow position: | chr17:22452154-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 162 |
| Conread position: | 5-512 |
| Cow position: | chr17:22452238-22451731 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 162 |
| Conread position: | 5-629 |
| Cow position: | chr17:22473309-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 5-633 |
| Cow position: | chr17:22499168-22498540 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 91 |
| Conread position: | 5-829 |
| Cow position: | chr17:22553045-22552222 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 420 |
| Conread position: | 5-878 |
| Cow position: | chr17:22552457-22551584 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 412 |
| Conread position: | 8-710 |
| Cow position: | chr17:41440893-41440191 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 676, 670 |
| Conread position: | 9-630 |
| Cow position: | chr17:41440808-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-780 |
| Cow position: | chr17:44467503-44468274 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 401 |
| Conread position: | 10-380 |
| Cow position: | chr17:44468008-44468378 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 243, 239 |
| Conread position: | 10-545 |
| Cow position: | chr17:44467840-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-783 |
| Cow position: | chr17:22552284-22551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 567 |
| Conread position: | 11-562 |
| Cow position: | chr17:22552031-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-717 |
| Cow position: | chr17:22499246-22498540 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 231 |
| Conread position: | 11-720 |
| Cow position: | chr17:22552199-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 163 |
| Conread position: | 11-738 |
| Cow position: | chr17:22452400-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 421 |
| Conread position: | 11-741 |
| Cow position: | chr17:22590205-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 11-784 |
| Cow position: | chr17:22499330-22498557 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 401 |
| Conread position: | 11-786 |
| Cow position: | chr17:22552535-22551760 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 156 |
| Conread position: | 11-786 |
| Cow position: | chr17:22552619-22551844 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 83 |
| Conread position: | 11-786 |
| Cow position: | chr17:22552703-22551928 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 337 |
| Conread position: | 11-786 |
| Cow position: | chr17:22590121-22589346 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 634, 628 |
| Conread position: | 11-826 |
| Cow position: | chr17:22552871-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 248 |
| Conread position: | 11-849 |
| Cow position: | chr17:22552367-22551530 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 781, 792 |
| Conread position: | 11-849 |
| Cow position: | chr17:22552787-22551950 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 421 |
| Conread position: | 12-786 |
| Cow position: | chr17:22553122-22552348 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 527, 521 |
| Conread position: | 23-629 |
| Cow position: | chr17:44467769-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 188 |
| Conread position: | 23-711 |
| Cow position: | chr17:44467685-44468373 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 23-720 |
| Cow position: | chr17:44467601-44468298 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 193 |
| Conread position: | 23-842 |
| Cow position: | chr17:44467433-44468250 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 385 |
| Conread position: | 27-772 |
| Cow position: | chr17:44467353-44468098 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 5 |
| Conread position: | 32-949 |
| Cow position: | chr17:22499393-22498475 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 379 |
| Conread position: | 37-832 |
| Cow position: | chr17:41441116-41440322 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 777, 748 |
| Conread position: | 85-809 |
| Cow position: | chr17:22499424-22498700 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 327 |
| Conread position: | 95-805 |
| Cow position: | chr17:22452400-22451690 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 107-741 |
| Cow position: | chr17:22473327-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 302 |
| Conread position: | 111-786 |
| Cow position: | chr17:22553107-22552432 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 321 |
| Conread position: | 119-836 |
| Cow position: | chr17:41441118-41440402 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 293 |
| Conread position: | 126-786 |
| Cow position: | chr17:22473262-22473922 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 291 |
| Conread position: | 179-786 |
| Cow position: | chr17:22452400-22451793 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 305 |
| Conread position: | 198-800 |
| Cow position: | chr17:44467355-44467959 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 365 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 15, 463 |
| Conread position: | 249-786 |
| Cow position: | chr17:22553137-22552600 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 10 |
| Conread position: | 260-878 |
| Cow position: | chr17:22473231-22473846 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 32 |
| Conread position: | 346-835 |
| Cow position: | chr17:22452401-22451913 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 138 |
Show alignments to all cow chromosomes.