Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 2-531 |
| Cow position: | chr19:43570167-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 246 |
| Conread position: | 5-330 |
| Cow position: | chr19:14948323-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 89 |
| Conread position: | 5-461 |
| Cow position: | chr19:23597257-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 411 |
| Conread position: | 5-538 |
| Cow position: | chr19:14940552-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 398 |
| Conread position: | 5-618 |
| Cow position: | chr19:23649866-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-696 |
| Cow position: | chr19:14940384-14941075 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 252 |
| Conread position: | 5-772 |
| Cow position: | chr19:23649698-23650465 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 250 |
| Conread position: | 5-780 |
| Cow position: | chr19:23596924-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 109 |
| Conread position: | 5-786 |
| Cow position: | chr19:14940048-14940829 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 408 |
| Conread position: | 5-786 |
| Cow position: | chr19:14940216-14940997 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 414 |
| Conread position: | 5-786 |
| Cow position: | chr19:14959593-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 247 |
| Conread position: | 5-829 |
| Cow position: | chr19:23613996-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 586, 572 |
| Conread position: | 6-568 |
| Cow position: | chr19:43570247-43569689 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 336 |
| Conread position: | 7-289 |
| Cow position: | chr19:23650204-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-878 |
| Cow position: | chr19:23613410-23614281 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 856, 803 |
| Conread position: | 7-889 |
| Cow position: | chr19:23613662-23614542 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 344 |
| Conread position: | 8-545 |
| Cow position: | chr19:23597176-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 472, 487 |
| Conread position: | 8-702 |
| Cow position: | chr19:23649785-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 88 |
| Conread position: | 9-878 |
| Cow position: | chr19:20677511-20678380 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 10-540 |
| Cow position: | chr19:23614589-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 148 |
| Conread position: | 10-786 |
| Cow position: | chr19:14960076-14959316 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 158 |
| Conread position: | 10-809 |
| Cow position: | chr19:23613581-23614380 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 163 |
| Conread position: | 10-876 |
| Cow position: | chr19:14940137-14941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 853, 800 |
| Conread position: | 11-374 |
| Cow position: | chr19:14959176-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 11-498 |
| Cow position: | chr19:14948484-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 84 |
| Conread position: | 11-509 |
| Cow position: | chr19:20635483-20634985 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 11-629 |
| Cow position: | chr19:23597095-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 403 |
| Conread position: | 11-708 |
| Cow position: | chr19:14959991-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 177 |
| Conread position: | 11-711 |
| Cow position: | chr19:23597014-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 636, 27 |
| Conread position: | 11-753 |
| Cow position: | chr19:14940306-14941048 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 672, 668 |
| Conread position: | 11-786 |
| Cow position: | chr19:14960241-14959484 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 88 |
| Conread position: | 11-786 |
| Cow position: | chr19:23614086-23614861 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-786 |
| Cow position: | chr19:23649620-23650395 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-804 |
| Cow position: | chr19:23649452-23650245 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 153 |
| Conread position: | 11-805 |
| Cow position: | chr19:23613834-23614628 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 406 |
| Conread position: | 11-829 |
| Cow position: | chr19:23614170-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 156 |
| Conread position: | 11-846 |
| Cow position: | chr19:23649536-23650370 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 397 |
| Conread position: | 11-877 |
| Cow position: | chr19:23614254-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 147 |
| Conread position: | 14-829 |
| Cow position: | chr19:23596849-23597661 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 82 |
| Conread position: | 16-657 |
| Cow position: | chr19:20678022-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 399 |
| Conread position: | 16-681 |
| Cow position: | chr19:20635646-20634981 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 16-786 |
| Cow position: | chr19:14960154-14959400 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 243 |
| Conread position: | 17-848 |
| Cow position: | chr19:20677435-20678265 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 23-826 |
| Cow position: | chr19:20677861-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 159 |
| Conread position: | 23-833 |
| Cow position: | chr19:20677693-20678502 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 24-848 |
| Cow position: | chr19:23649297-23650120 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 539, 548 |
| Conread position: | 32-786 |
| Cow position: | chr19:23649389-23650143 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 613, 606 |
| Conread position: | 38-878 |
| Cow position: | chr19:23613357-23614197 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 372 |
| Conread position: | 41-829 |
| Cow position: | chr19:20677375-20678162 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 181 |
| Conread position: | 53-772 |
| Cow position: | chr19:43570358-43569653 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 56-743 |
| Cow position: | chr19:14960448-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 295 |
| Conread position: | 92-496 |
| Cow position: | chr19:14916026-14916425 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 93 |
| Conread position: | 99-835 |
| Cow position: | chr19:23649288-23650023 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 708, 0 |
| Conread position: | 107-741 |
| Cow position: | chr19:20635639-20635005 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 328 |
| Conread position: | 113-878 |
| Cow position: | chr19:14939988-14940753 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 750, 694 |
| Conread position: | 115-787 |
| Cow position: | chr19:23613350-23614022 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-573 |
| Cow position: | chr19:14915967-14916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 131-790 |
| Cow position: | chr19:20635699-20635040 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 188-576 |
| Cow position: | chr19:14948475-14948088 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 196-876 |
| Cow position: | chr19:14939987-14940667 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 667, 614 |
| Conread position: | 201-829 |
| Cow position: | chr19:14960387-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 214 |
| Conread position: | 207-825 |
| Cow position: | chr19:20677373-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 225 |
| Conread position: | 214-848 |
| Cow position: | chr19:14960456-14959827 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 9 |
| Conread position: | 220-786 |
| Cow position: | chr19:20677305-20677868 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 54 |
| Conread position: | 259-806 |
| Cow position: | chr19:43570246-43569701 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 150 |
| Conread position: | 261-845 |
| Cow position: | chr19:23596844-23597424 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 563, 189 |
| Conread position: | 263-750 |
| Cow position: | chr19:14948484-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 305 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 421, 81 |
| Conread position: | 264-878 |
| Cow position: | chr19:43570398-43569795 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 5 |
| Conread position: | 344-854 |
| Cow position: | chr19:23596843-23597349 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 188 |
| Conread position: | 345-741 |
| Cow position: | chr19:14916027-14916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 361-835 |
| Cow position: | chr19:14948470-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 368-834 |
| Cow position: | chr19:23613351-23613816 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 209 |
| Conread position: | 514-949 |
| Cow position: | chr19:23649283-23649729 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 344, 296 |
Show alignments to all cow chromosomes.