Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 2-363 |
| Cow position: | chr2:82800085-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 257 |
| Conread position: | 2-813 |
| Cow position: | chr2:5874959-5874150 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 4-829 |
| Cow position: | chr2:86465326-86466147 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 5-785 |
| Cow position: | chr2:82799668-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 162 |
| Conread position: | 5-786 |
| Cow position: | chr2:5874872-5874091 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 88 |
| Conread position: | 5-786 |
| Cow position: | chr2:82799584-82800365 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 162 |
| Conread position: | 6-743 |
| Cow position: | chr2:78755228-78755960 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 5 |
| Conread position: | 7-786 |
| Cow position: | chr2:82799502-82800281 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 160 |
| Conread position: | 7-878 |
| Cow position: | chr2:86464990-86465861 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 151 |
| Conread position: | 9-786 |
| Cow position: | chr2:86465496-86466271 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 245 |
| Conread position: | 11-274 |
| Cow position: | chr2:48689310-48689046 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 233, 217 |
| Conread position: | 11-741 |
| Cow position: | chr2:78755566-78756295 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 11-780 |
| Cow position: | chr2:5875034-5874265 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 11-780 |
| Cow position: | chr2:78754896-78755663 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 163 |
| Conread position: | 11-787 |
| Cow position: | chr2:78754576-78755336 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 11-790 |
| Cow position: | chr2:5875118-5874339 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 12-300 |
| Cow position: | chr2:78756070-78756355 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 16-780 |
| Cow position: | chr2:86465419-86466183 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 323 |
| Conread position: | 16-781 |
| Cow position: | chr2:86465167-86465932 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 76 |
| Conread position: | 20-786 |
| Cow position: | chr2:78755157-78755919 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 181 |
| Conread position: | 23-829 |
| Cow position: | chr2:78754824-78755627 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 310 |
| Conread position: | 42-790 |
| Cow position: | chr2:5875171-5874423 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 205 |
| Conread position: | 43-829 |
| Cow position: | chr2:78754190-78754957 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 467 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 283, 250 |
| Conread position: | 56-786 |
| Cow position: | chr2:82799467-82800197 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 177 |
| Conread position: | 67-785 |
| Cow position: | chr2:86464966-86465684 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 179 |
| Conread position: | 98-626 |
| Cow position: | chr2:48689558-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 104-743 |
| Cow position: | chr2:78754167-78754800 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 142, 135 |
| Conread position: | 117-786 |
| Cow position: | chr2:5875180-5874511 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 468 |
| Conread position: | 140-876 |
| Cow position: | chr2:82799467-82800203 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 264 |
| Conread position: | 187-710 |
| Cow position: | chr2:48689553-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 323 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 201-832 |
| Cow position: | chr2:5875180-5874550 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 124 |
| Conread position: | 220-753 |
| Cow position: | chr2:82799463-82799996 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 191 |
| Conread position: | 246-790 |
| Cow position: | chr2:86464977-86465521 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 177 |
| Conread position: | 272-790 |
| Cow position: | chr2:78754167-78754683 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 283-743 |
| Cow position: | chr2:48689541-48689082 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 140, 126 |
| Conread position: | 403-806 |
| Cow position: | chr2:86464966-86465369 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 184, 174 |
| Conread position: | 439-806 |
| Cow position: | chr2:48689553-48689187 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 467-836 |
| Cow position: | chr2:82799458-82799826 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 124, 117 |
| Conread position: | 533-809 |
| Cow position: | chr2:48689543-48689268 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
Show alignments to all cow chromosomes.