Cow genome map

Conread name: Ss1.1-Pig3-SRG8010C13.3

Conread position: 2-287
Cow position: chr22:11666670-11666955 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 159, 171

Conread position: 2-372
Cow position: chr22:46654488-46654859 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 233
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 48, 53

Conread position: 2-373
Cow position: chr22:11701324-11701695 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 251
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 92, 81

Conread position: 3-383
Cow position: chr22:11641082-11641463 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 251

Conread position: 3-540
Cow position: chr22:12458300-12457763 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 251

Conread position: 3-743
Cow position: chr22:12431936-12431196 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 420

Conread position: 5-285
Cow position: chr22:12385188-12384908 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 164, 153

Conread position: 5-407
Cow position: chr22:12418885-12418483 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-528
Cow position: chr22:12385442-12384917 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 5-624
Cow position: chr22:12458382-12457763 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 404

Conread position: 5-629
Cow position: chr22:12499348-12499972 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 91

Conread position: 5-697
Cow position: chr22:12431262-12430570 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 502

Conread position: 5-743
Cow position: chr22:12432018-12431280 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 245

Conread position: 5-785
Cow position: chr22:12399534-12398754 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 166

Conread position: 5-786
Cow position: chr22:12431766-12430985 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-786
Cow position: chr22:12476331-12475550 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 407

Conread position: 5-787
Cow position: chr22:12432102-12431320 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-798
Cow position: chr22:12476079-12475286 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-832
Cow position: chr22:12476163-12475337 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 181

Conread position: 5-832
Cow position: chr22:12499096-12499922 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 139

Conread position: 5-876
Cow position: chr22:12399786-12398915 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 50

Conread position: 6-460
Cow position: chr22:11666506-11666960 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 117

Conread position: 6-491
Cow position: chr22:11701160-11701645 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 245

Conread position: 6-628
Cow position: chr22:11640833-11641455 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 160

Conread position: 6-656
Cow position: chr22:12544976-12545616 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 392
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 111, 105

Conread position: 6-798
Cow position: chr22:12499181-12499973 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-878
Cow position: chr22:12431681-12430809 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 418

Conread position: 7-876
Cow position: chr22:12399700-12398831 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 332

Conread position: 8-705
Cow position: chr22:12385607-12384908 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 162

Conread position: 8-743
Cow position: chr22:11640667-11641402 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 335

Conread position: 8-856
Cow position: chr22:12399861-12399018 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 24

Conread position: 9-377
Cow position: chr22:14442358-14442723 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 230
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 125, 130

Conread position: 10-371
Cow position: chr22:12418796-12418435 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-711
Cow position: chr22:11640753-11641454 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 246

Conread position: 10-780
Cow position: chr22:12419233-12418446 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 10-784
Cow position: chr22:14429709-14430483 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 165

Conread position: 10-786
Cow position: chr22:14429793-14430569 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 47

Conread position: 11-395
Cow position: chr22:12385266-12384883 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 360

Conread position: 11-457
Cow position: chr22:11701249-11701695 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 330

Conread position: 11-529
Cow position: chr22:12418963-12418445 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-708
Cow position: chr22:12458460-12457763 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 499

Conread position: 11-708
Cow position: chr22:46654161-46654859 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 81

Conread position: 11-780
Cow position: chr22:46654077-46654846 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 45

Conread position: 11-786
Cow position: chr22:12498934-12499709 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 399

Conread position: 11-790
Cow position: chr22:12432432-12431653 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-826
Cow position: chr22:12432264-12431450 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 796, 0

Conread position: 12-790
Cow position: chr22:12419315-12418520 (view UCSC Genome Browser custom track)
Alignm length: 796
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 0

Conread position: 12-846
Cow position: chr22:12458627-12457794 (view UCSC Genome Browser custom track)
Alignm length: 839
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 400

Conread position: 16-658
Cow position: chr22:14468044-14468685 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 77

Conread position: 17-405
Cow position: chr22:14442281-14442667 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 250
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 5

Conread position: 20-811
Cow position: chr22:14430139-14430930 (view UCSC Genome Browser custom track)
Alignm length: 802
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 64

Conread position: 22-621
Cow position: chr22:14442119-14442715 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 368
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 393, 410

Conread position: 23-787
Cow position: chr22:12476229-12475465 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-790
Cow position: chr22:12458532-12457765 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 407

Conread position: 23-847
Cow position: chr22:12499030-12499853 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 784, 0

Conread position: 29-743
Cow position: chr22:12432330-12431616 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 38-289
Cow position: chr22:12458013-12457762 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 37, 52

Conread position: 38-786
Cow position: chr22:14429653-14430401 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 16

Conread position: 41-641
Cow position: chr22:12419017-12418418 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 379

Conread position: 41-742
Cow position: chr22:14467985-14468685 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 54

Conread position: 41-753
Cow position: chr22:12544591-12545303 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 422
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 294, 305

Conread position: 41-790
Cow position: chr22:11640616-11641365 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 368

Conread position: 44-803
Cow position: chr22:12385655-12384895 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 121

Conread position: 47-575
Cow position: chr22:11701117-11701645 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 114

Conread position: 53-878
Cow position: chr22:12476367-12475542 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 114

Conread position: 53-878
Cow position: chr22:12498892-12499717 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 110

Conread position: 55-786
Cow position: chr22:46654037-46654768 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 184

Conread position: 58-786
Cow position: chr22:12544524-12545252 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 446
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 44, 25

Conread position: 68-836
Cow position: chr22:12432459-12431692 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 190

Conread position: 70-854
Cow position: chr22:12385713-12384928 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 34

Conread position: 92-786
Cow position: chr22:12476412-12475718 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 100-741
Cow position: chr22:14442029-14442667 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 385
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 75, 82

Conread position: 104-776
Cow position: chr22:46654002-46654674 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 251

Conread position: 112-783
Cow position: chr22:12432499-12431828 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 146

Conread position: 113-826
Cow position: chr22:14441958-14442667 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 430
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 298, 310

Conread position: 113-876
Cow position: chr22:12498868-12499631 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 675, 690

Conread position: 117-786
Cow position: chr22:14467977-14468646 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 377

Conread position: 118-575
Cow position: chr22:11666450-11666907 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 131

Conread position: 118-709
Cow position: chr22:11701104-11701695 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 124-725
Cow position: chr22:12419018-12418418 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 592, 0

Conread position: 132-845
Cow position: chr22:46653946-46654658 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 103

Conread position: 193-786
Cow position: chr22:14429640-14430233 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 32

Conread position: 196-877
Cow position: chr22:12498867-12499546 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 217

Conread position: 202-689
Cow position: chr22:11666450-11666937 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 136

Conread position: 202-743
Cow position: chr22:11701104-11701645 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 133

Conread position: 220-829
Cow position: chr22:14429502-14430107 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 372
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 178, 116

Conread position: 236-878
Cow position: chr22:12385716-12385071 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 263

Conread position: 246-805
Cow position: chr22:11640569-11641128 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 102

Conread position: 254-854
Cow position: chr22:12498841-12499440 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 556, 0

Conread position: 254-892
Cow position: chr22:12476418-12475782 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 549

Conread position: 255-581
Cow position: chr22:12544469-12544795 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 212
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 100, 80

Conread position: 261-785
Cow position: chr22:12419318-12418777 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 0

Conread position: 262-790
Cow position: chr22:14441939-14442467 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 320
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 135, 139

Conread position: 268-804
Cow position: chr22:14442029-14442565 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 341
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 45, 57

Conread position: 305-743
Cow position: chr22:11666469-11666907 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 108

Conread position: 305-786
Cow position: chr22:11701123-11701604 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 114

Conread position: 322-790
Cow position: chr22:12419341-12418856 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 286
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 13, 27

Conread position: 331-876
Cow position: chr22:12476423-12475880 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 533, 13

Conread position: 331-876
Cow position: chr22:12498834-12499379 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 53

Conread position: 341-787
Cow position: chr22:12458634-12458188 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 370-786
Cow position: chr22:11666450-11666866 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 266
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 173, 162

Conread position: 370-832
Cow position: chr22:11701104-11701565 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 299

Conread position: 376-804
Cow position: chr22:12419018-12418590 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 454-790
Cow position: chr22:11666450-11666786 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 216
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 139, 131

Conread position: 556-886
Cow position: chr22:12399901-12399577 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 206
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 307, 62

Show alignments to all cow chromosomes.