Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 3-361 |
| Cow position: | chr23:25724071-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 93 |
| Conread position: | 3-392 |
| Cow position: | chr23:24639692-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-406 |
| Cow position: | chr23:24547106-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-412 |
| Cow position: | chr23:24535821-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 372 |
| Conread position: | 3-447 |
| Cow position: | chr23:25660291-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 420 |
| Conread position: | 3-608 |
| Cow position: | chr23:24560666-24560061 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 553, 539 |
| Conread position: | 5-216 |
| Cow position: | chr23:24626534-24626743 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 91 |
| Conread position: | 5-510 |
| Cow position: | chr23:25660209-25660714 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-519 |
| Cow position: | chr23:24639610-24640123 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 504, 0 |
| Conread position: | 5-545 |
| Cow position: | chr23:24639526-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 91 |
| Conread position: | 5-782 |
| Cow position: | chr23:25626172-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 91 |
| Conread position: | 6-290 |
| Cow position: | chr23:25660462-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-623 |
| Cow position: | chr23:24547271-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 611, 0 |
| Conread position: | 6-653 |
| Cow position: | chr23:24639443-24640091 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 90 |
| Conread position: | 6-708 |
| Cow position: | chr23:25626341-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 95 |
| Conread position: | 7-533 |
| Cow position: | chr23:25698597-25698072 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 289 |
| Conread position: | 8-624 |
| Cow position: | chr23:25626427-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 9-775 |
| Cow position: | chr23:24522506-24521737 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 466 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 10-541 |
| Cow position: | chr23:24547183-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-292 |
| Cow position: | chr23:24626456-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 11-292 |
| Cow position: | chr23:25626763-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 185, 196 |
| Conread position: | 11-520 |
| Cow position: | chr23:24522669-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 59 |
| Conread position: | 11-667 |
| Cow position: | chr23:24522336-24521678 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 414 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 135, 140 |
| Conread position: | 11-785 |
| Cow position: | chr23:24639280-24640054 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 116 |
| Conread position: | 11-849 |
| Cow position: | chr23:25626094-25626928 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 12-876 |
| Cow position: | chr23:24639197-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 15-579 |
| Cow position: | chr23:25660134-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 252 |
| Conread position: | 16-328 |
| Cow position: | chr23:24654102-24654416 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 16-750 |
| Cow position: | chr23:24560821-24560088 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 25-474 |
| Cow position: | chr23:24626302-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 27-361 |
| Cow position: | chr23:24521982-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 121, 126 |
| Conread position: | 27-826 |
| Cow position: | chr23:25626026-25626821 (view UCSC Genome Browser custom track) |
| Alignm length: | 804 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 319 |
| Conread position: | 37-663 |
| Cow position: | chr23:24522809-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-711 |
| Cow position: | chr23:24639391-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 41-496 |
| Cow position: | chr23:24535867-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 0 |
| Conread position: | 42-606 |
| Cow position: | chr23:25698645-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 47-696 |
| Cow position: | chr23:24547314-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 53-379 |
| Cow position: | chr23:24654055-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-445 |
| Cow position: | chr23:25724105-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 372 |
| Conread position: | 75-772 |
| Cow position: | chr23:24522853-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 82-877 |
| Cow position: | chr23:24560924-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 92-844 |
| Cow position: | chr23:25626007-25626755 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 95-666 |
| Cow position: | chr23:25698676-25698105 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 106-743 |
| Cow position: | chr23:24536054-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 108-462 |
| Cow position: | chr23:24654024-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 11, 302 |
| Conread position: | 109-559 |
| Cow position: | chr23:24626302-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 301 |
| Conread position: | 109-699 |
| Cow position: | chr23:25660145-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 111-776 |
| Cow position: | chr23:24547334-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-540 |
| Cow position: | chr23:25724111-25723702 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 182-785 |
| Cow position: | chr23:25660133-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 236 |
| Conread position: | 199-832 |
| Cow position: | chr23:24522815-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 208-531 |
| Cow position: | chr23:24654042-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 209-849 |
| Cow position: | chr23:24547320-24546681 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 604, 0 |
| Conread position: | 215-576 |
| Cow position: | chr23:25724111-25723750 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 198 |
| Conread position: | 224-775 |
| Cow position: | chr23:25698631-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 224-790 |
| Cow position: | chr23:24536020-24535454 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 243-713 |
| Cow position: | chr23:24626268-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 262-835 |
| Cow position: | chr23:25698677-25698105 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 278-833 |
| Cow position: | chr23:25660146-25660700 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 0 |
| Conread position: | 284-846 |
| Cow position: | chr23:24547329-24546768 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 293-574 |
| Cow position: | chr23:24654043-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 299-696 |
| Cow position: | chr23:25724111-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 119 |
| Conread position: | 305-835 |
| Cow position: | chr23:24536023-24535494 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 344-780 |
| Cow position: | chr23:24626285-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 344-786 |
| Cow position: | chr23:25660128-25660570 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 376-708 |
| Cow position: | chr23:24654042-24654374 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 37 |
| Conread position: | 378-848 |
| Cow position: | chr23:24536034-24535565 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 410 |
| Conread position: | 423-741 |
| Cow position: | chr23:25626000-25626320 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 442-805 |
| Cow position: | chr23:24536054-24535691 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 151, 158 |
| Conread position: | 444-783 |
| Cow position: | chr23:24654024-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 445-866 |
| Cow position: | chr23:24626302-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 343 |
| Conread position: | 447-790 |
| Cow position: | chr23:25724131-25723788 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 447-875 |
| Cow position: | chr23:24547334-24546908 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 544-889 |
| Cow position: | chr23:24654042-24654387 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 319, 269 |
| Conread position: | 551-876 |
| Cow position: | chr23:25724111-25723786 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 133, 128 |
Show alignments to all cow chromosomes.