Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 1-290 |
| Cow position: | chr28:9299274-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 257, 238 |
| Conread position: | 2-707 |
| Cow position: | chr28:9298871-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 123 |
| Conread position: | 3-427 |
| Cow position: | chr28:9290307-9290728 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 68 |
| Conread position: | 4-867 |
| Cow position: | chr28:9252740-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 5-291 |
| Cow position: | chr28:33210369-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 5-555 |
| Cow position: | chr28:7810405-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 136 |
| Conread position: | 6-708 |
| Cow position: | chr28:9252908-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 7-372 |
| Cow position: | chr28:7758467-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 7-786 |
| Cow position: | chr28:9298793-9299555 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 587, 25 |
| Conread position: | 8-376 |
| Cow position: | chr28:33210288-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 8-790 |
| Cow position: | chr28:7757392-7758174 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 88 |
| Conread position: | 8-790 |
| Cow position: | chr28:7757896-7758662 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 0 |
| Conread position: | 10-579 |
| Cow position: | chr28:9290150-9290713 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 58 |
| Conread position: | 10-784 |
| Cow position: | chr28:11334243-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 11-328 |
| Cow position: | chr28:9253334-9253652 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 11-498 |
| Cow position: | chr28:34673418-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 318 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 63, 72 |
| Conread position: | 11-522 |
| Cow position: | chr28:7758387-7758898 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 265, 260 |
| Conread position: | 11-629 |
| Cow position: | chr28:7758235-7758837 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 100 |
| Conread position: | 11-636 |
| Cow position: | chr28:7810327-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 11-664 |
| Cow position: | chr28:9290067-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 79 |
| Conread position: | 11-668 |
| Cow position: | chr28:7757731-7758388 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-705 |
| Cow position: | chr28:34695891-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 95 |
| Conread position: | 11-780 |
| Cow position: | chr28:7757563-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 11-783 |
| Cow position: | chr28:9252832-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 60 |
| Conread position: | 11-784 |
| Cow position: | chr28:7758067-7758823 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 553, 255 |
| Conread position: | 11-786 |
| Cow position: | chr28:9298631-9299387 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 11-790 |
| Cow position: | chr28:9298713-9299475 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 105 |
| Conread position: | 11-848 |
| Cow position: | chr28:7757479-7758315 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 798, 788 |
| Conread position: | 13-581 |
| Cow position: | chr28:7758304-7758873 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 342 |
| Conread position: | 13-717 |
| Cow position: | chr28:9289982-9290683 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 44 |
| Conread position: | 24-790 |
| Cow position: | chr28:9289910-9290672 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 42 |
| Conread position: | 33-469 |
| Cow position: | chr28:34673356-34673792 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 38-460 |
| Cow position: | chr28:33210234-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 47-772 |
| Cow position: | chr28:34695843-34696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 53-720 |
| Cow position: | chr28:7810285-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 249 |
| Conread position: | 94-786 |
| Cow position: | chr28:11334243-11333551 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-742 |
| Cow position: | chr28:7810252-7810881 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 96-836 |
| Cow position: | chr28:34695724-34696463 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 86 |
| Conread position: | 114-666 |
| Cow position: | chr28:34673353-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 116-544 |
| Cow position: | chr28:33210228-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 116-878 |
| Cow position: | chr28:7757254-7758010 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 748, 82 |
| Conread position: | 131-836 |
| Cow position: | chr28:34695843-34696547 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 136-786 |
| Cow position: | chr28:7757352-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 442 |
| Conread position: | 194-786 |
| Cow position: | chr28:9298561-9299149 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 359 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 197-576 |
| Cow position: | chr28:34679561-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 218, 20 |
| Conread position: | 200-628 |
| Cow position: | chr28:33210228-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 201-750 |
| Cow position: | chr28:34673356-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 345 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 125, 140 |
| Conread position: | 263-761 |
| Cow position: | chr28:34679579-34679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 240, 40 |
| Conread position: | 267-886 |
| Cow position: | chr28:11334154-11333535 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 145 |
| Conread position: | 284-711 |
| Cow position: | chr28:33210228-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 198 |
| Conread position: | 293-805 |
| Cow position: | chr28:11334212-11333700 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 450-832 |
| Cow position: | chr28:34673353-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 127, 142 |
| Conread position: | 452-840 |
| Cow position: | chr28:33210228-33210616 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 555-790 |
| Cow position: | chr28:7810283-7810518 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.