Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 2-453 |
| Cow position: | chr3:68045907-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 0 |
| Conread position: | 2-743 |
| Cow position: | chr3:68026978-68027719 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-409 |
| Cow position: | chr3:68027315-68027721 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-539 |
| Cow position: | chr3:77351100-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 63 |
| Conread position: | 5-577 |
| Cow position: | chr3:68027149-68027721 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 5-582 |
| Cow position: | chr3:62722184-62721607 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 407 |
| Conread position: | 5-715 |
| Cow position: | chr3:62742750-62743439 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 91 |
| Conread position: | 5-783 |
| Cow position: | chr3:62742419-62743171 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 217 |
| Conread position: | 5-786 |
| Cow position: | chr3:62742668-62743426 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 82 |
| Conread position: | 7-454 |
| Cow position: | chr3:62722014-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 407 |
| Conread position: | 7-517 |
| Cow position: | chr3:68027235-68027745 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 157 |
| Conread position: | 7-530 |
| Cow position: | chr3:68045828-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 156 |
| Conread position: | 9-445 |
| Cow position: | chr3:20194867-20195303 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 246, 242 |
| Conread position: | 11-529 |
| Cow position: | chr3:20194785-20195303 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 393 |
| Conread position: | 11-537 |
| Cow position: | chr3:62722094-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 404 |
| Conread position: | 11-623 |
| Cow position: | chr3:68045748-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 83 |
| Conread position: | 16-660 |
| Cow position: | chr3:68027076-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 16-660 |
| Cow position: | chr3:68045669-68046313 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 30-255 |
| Cow position: | chr3:20194444-20194669 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 128, 137 |
| Conread position: | 34-581 |
| Cow position: | chr3:20194724-20195271 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 224 |
| Conread position: | 37-711 |
| Cow position: | chr3:62742367-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 272 |
| Conread position: | 37-784 |
| Cow position: | chr3:62722320-62721573 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-771 |
| Cow position: | chr3:68045610-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 299 |
| Conread position: | 101-879 |
| Cow position: | chr3:68026993-68027767 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 57 |
| Conread position: | 108-851 |
| Cow position: | chr3:68045593-68046335 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 113-847 |
| Cow position: | chr3:62742276-62743004 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 609, 55 |
| Conread position: | 118-917 |
| Cow position: | chr3:62722323-62721524 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 744, 692 |
| Conread position: | 121-696 |
| Cow position: | chr3:20194727-20195302 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 136-579 |
| Cow position: | chr3:62743033-62743471 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 296, 82 |
| Conread position: | 195-420 |
| Cow position: | chr3:20194441-20194668 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 197-848 |
| Cow position: | chr3:62742276-62742921 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 386 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 79 |
| Conread position: | 205-773 |
| Cow position: | chr3:20194727-20195295 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 194 |
| Conread position: | 206-776 |
| Cow position: | chr3:77351150-77350591 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 344 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 173, 46 |
| Conread position: | 255-876 |
| Cow position: | chr3:62742250-62742865 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 608, 104 |
| Conread position: | 284-507 |
| Cow position: | chr3:20194446-20194669 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 116, 121 |
| Conread position: | 373-846 |
| Cow position: | chr3:20194727-20195199 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 36, 59 |
Show alignments to all cow chromosomes.