Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010C13.3 |
| Conread position: | 3-584 |
| Cow position: | chr7:18390217-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 3-660 |
| Cow position: | chr7:42878885-42878227 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 3-685 |
| Cow position: | chr7:12293319-12294001 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 599, 607 |
| Conread position: | 3-839 |
| Cow position: | chr7:3179752-3180587 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 742, 749 |
| Conread position: | 5-629 |
| Cow position: | chr7:1014828-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 5-790 |
| Cow position: | chr7:3180090-3180874 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 590, 595 |
| Conread position: | 5-835 |
| Cow position: | chr7:1014414-1015237 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 233 |
| Conread position: | 7-507 |
| Cow position: | chr7:18390305-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 407 |
| Conread position: | 7-698 |
| Cow position: | chr7:11601128-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-846 |
| Cow position: | chr7:3179840-3180678 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 800, 0 |
| Conread position: | 8-780 |
| Cow position: | chr7:18389970-18390742 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 167 |
| Conread position: | 9-361 |
| Cow position: | chr7:12293661-12294013 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 164, 168 |
| Conread position: | 10-354 |
| Cow position: | chr7:28846737-28847081 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 275, 268 |
| Conread position: | 11-530 |
| Cow position: | chr7:28846570-28847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 11-657 |
| Cow position: | chr7:1439616-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 11-660 |
| Cow position: | chr7:8243449-8244095 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 391 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 11-741 |
| Cow position: | chr7:8242862-8243591 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 437 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 11-743 |
| Cow position: | chr7:8325384-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 61 |
| Conread position: | 11-753 |
| Cow position: | chr7:1014750-1015494 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 245 |
| Conread position: | 11-786 |
| Cow position: | chr7:3180012-3180787 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 503 |
| Conread position: | 11-786 |
| Cow position: | chr7:8277743-8278516 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 149 |
| Conread position: | 11-790 |
| Cow position: | chr7:8277659-8278438 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 11-809 |
| Cow position: | chr7:42879213-42878415 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 757, 743 |
| Conread position: | 11-826 |
| Cow position: | chr7:8324880-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 11-847 |
| Cow position: | chr7:3179928-3180763 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 235 |
| Conread position: | 11-878 |
| Cow position: | chr7:1014336-1015197 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 11-882 |
| Cow position: | chr7:42879129-42878258 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 852, 799 |
| Conread position: | 12-411 |
| Cow position: | chr7:11434668-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 13-835 |
| Cow position: | chr7:1014668-1015491 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 791, 0 |
| Conread position: | 17-826 |
| Cow position: | chr7:8243204-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 19-614 |
| Cow position: | chr7:28846494-28847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 364 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 133, 129 |
| Conread position: | 22-826 |
| Cow position: | chr7:8243125-8243927 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 480 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 23-786 |
| Cow position: | chr7:8325312-8326075 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 26-675 |
| Cow position: | chr7:18390156-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 38-790 |
| Cow position: | chr7:11434964-11434233 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 462 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 42-782 |
| Cow position: | chr7:11601177-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 708, 704 |
| Conread position: | 45-686 |
| Cow position: | chr7:28846436-28847077 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 47-769 |
| Cow position: | chr7:12293279-12294001 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 204 |
| Conread position: | 56-742 |
| Cow position: | chr7:42879252-42878566 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 56-835 |
| Cow position: | chr7:1014297-1015069 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 346 |
| Conread position: | 56-878 |
| Cow position: | chr7:3179721-3180543 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 358 |
| Conread position: | 73-834 |
| Cow position: | chr7:1439511-1440271 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 76 |
| Conread position: | 84-836 |
| Cow position: | chr7:18389962-18390713 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 95-474 |
| Cow position: | chr7:1438312-1438691 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 312, 331 |
| Conread position: | 95-878 |
| Cow position: | chr7:3179676-3180459 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 315 |
| Conread position: | 97-783 |
| Cow position: | chr7:1439451-1440137 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 136 |
| Conread position: | 101-751 |
| Cow position: | chr7:8277413-8278064 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 101-760 |
| Cow position: | chr7:18390147-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 121 |
| Conread position: | 106-878 |
| Cow position: | chr7:8277586-8278358 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 58 |
| Conread position: | 110-829 |
| Cow position: | chr7:1014267-1014979 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 297 |
| Conread position: | 113-786 |
| Cow position: | chr7:8324730-8325403 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 416 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 135, 146 |
| Conread position: | 113-786 |
| Cow position: | chr7:11601190-11600517 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 113-806 |
| Cow position: | chr7:8277257-8277950 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 419 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 116-877 |
| Cow position: | chr7:42879276-42878517 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 550, 545 |
| Conread position: | 124-741 |
| Cow position: | chr7:1438091-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 353 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 211, 105 |
| Conread position: | 136-780 |
| Cow position: | chr7:28846443-28847087 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 115 |
| Conread position: | 191-786 |
| Cow position: | chr7:1439461-1440056 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 126 |
| Conread position: | 192-878 |
| Cow position: | chr7:42879284-42878598 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 553, 562 |
| Conread position: | 196-877 |
| Cow position: | chr7:11601191-11600512 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 201-797 |
| Cow position: | chr7:18389995-18390591 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 202-743 |
| Cow position: | chr7:8324735-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 229 |
| Conread position: | 205-804 |
| Cow position: | chr7:12293269-12293868 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 359 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 222, 210 |
| Conread position: | 224-885 |
| Cow position: | chr7:1014297-1014952 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 361 |
| Conread position: | 228-790 |
| Cow position: | chr7:1439410-1439976 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 35, 176 |
| Conread position: | 255-786 |
| Cow position: | chr7:11601216-11600685 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 261-878 |
| Cow position: | chr7:3179674-3180291 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 238 |
| Conread position: | 264-878 |
| Cow position: | chr7:42879296-42878682 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 599, 549 |
| Conread position: | 287-786 |
| Cow position: | chr7:42879442-42878942 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 143 |
| Conread position: | 305-836 |
| Cow position: | chr7:12293285-12293815 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 122, 108 |
| Conread position: | 344-878 |
| Cow position: | chr7:3179673-3180207 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 519, 469 |
| Conread position: | 422-878 |
| Cow position: | chr7:3179667-3180123 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 366, 375 |
Show alignments to all cow chromosomes.