Cow genome map

Conread name: Ss1.1-Pig3-SRG8010C13.3

Conread position: 2-377
Cow position: chrX:13826558-13826183 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 240
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 262, 256

Conread position: 2-436
Cow position: chrX:25324693-25324259 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 277
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 94, 71

Conread position: 3-295
Cow position: chrX:29044953-29044661 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 74, 85

Conread position: 5-631
Cow position: chrX:29045287-29044661 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 175

Conread position: 5-636
Cow position: chrX:25309947-25310578 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 89

Conread position: 5-714
Cow position: chrX:25324942-25324233 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 99

Conread position: 5-786
Cow position: chrX:25309779-25310560 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 139

Conread position: 6-826
Cow position: chrX:25325697-25324878 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 92

Conread position: 7-648
Cow position: chrX:14181583-14180942 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 237

Conread position: 9-370
Cow position: chrX:14181245-14180884 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 232
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 9-452
Cow position: chrX:14181329-14180887 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 360

Conread position: 9-491
Cow position: chrX:14181413-14180931 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 452, 444

Conread position: 9-637
Cow position: chrX:13826803-13826175 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-783
Cow position: chrX:25325105-25324332 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 155

Conread position: 10-805
Cow position: chrX:25325273-25324478 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 323

Conread position: 11-470
Cow position: chrX:29045113-29044654 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-660
Cow position: chrX:25324852-25324207 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 157

Conread position: 11-723
Cow position: chrX:25309869-25310581 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 565, 576

Conread position: 11-785
Cow position: chrX:25325020-25324246 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 664, 657

Conread position: 11-786
Cow position: chrX:25325440-25324665 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 664, 657

Conread position: 11-809
Cow position: chrX:25325356-25324558 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 77

Conread position: 11-832
Cow position: chrX:25325188-25324368 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 345

Conread position: 11-832
Cow position: chrX:25325524-25324704 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 135

Conread position: 12-715
Cow position: chrX:29045361-29044661 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 26

Conread position: 17-786
Cow position: chrX:25309707-25310476 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 211

Conread position: 21-780
Cow position: chrX:13826958-13826200 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 11

Conread position: 29-731
Cow position: chrX:13826867-13826165 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 59

Conread position: 44-732
Cow position: chrX:14181630-14180942 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 141

Conread position: 62-405
Cow position: chrX:29045796-29045454 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 216
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 67-876
Cow position: chrX:25325803-25324995 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 756, 26

Conread position: 94-790
Cow position: chrX:13826970-13826274 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 23

Conread position: 96-786
Cow position: chrX:29045361-29044674 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 579, 29

Conread position: 101-742
Cow position: chrX:12627340-12627979 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 381
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 48, 67

Conread position: 113-489
Cow position: chrX:29045830-29045454 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 242
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 36, 56

Conread position: 119-786
Cow position: chrX:14181639-14180972 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 183

Conread position: 183-786
Cow position: chrX:25309705-25310308 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 53

Conread position: 229-809
Cow position: chrX:25309667-25310247 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 67

Conread position: 254-573
Cow position: chrX:29045773-29045454 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 201
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 279-657
Cow position: chrX:29045832-29045454 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 242
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 52, 58

Conread position: 287-806
Cow position: chrX:14181639-14181120 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 136

Conread position: 348-797
Cow position: chrX:29045361-29044915 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 281
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 232, 29

Conread position: 367-804
Cow position: chrX:13826949-13826512 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 280
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 61, 49

Conread position: 440-741
Cow position: chrX:29045755-29045454 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 449-786
Cow position: chrX:29045830-29045493 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 219
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 50, 73

Conread position: 452-876
Cow position: chrX:13826948-13826524 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 265
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 123, 128

Conread position: 484-826
Cow position: chrX:25309670-25310011 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 210
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 178, 182

Show alignments to all cow chromosomes.