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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8010H17.5
        

               
Conread position:
               
13-540
               

               
Cow position:
               
chr5:50638195-50637665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 257
               

               
Conread position:
               
215-390
               

               
Cow position:
               
chr5:45126828-45126649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
221-497
               

               
Cow position:
               
chr5:33080624-33080902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
221-497
               

               
Cow position:
               
chr5:72952009-72951726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
173, 26
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chr5:29903358-29903687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
236, 33
               

               
Conread position:
               
223-540
               

               
Cow position:
               
chr5:72006698-72007017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
224-400
               

               
Cow position:
               
chr5:9170421-9170593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
225-386
               

               
Cow position:
               
chr5:26253010-26253171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
225-482
               

               
Cow position:
               
chr5:35784825-35785073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
25, 105
               

               
Conread position:
               
228-540
               

               
Cow position:
               
chr5:27102635-27102952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
169, 21
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr5:57150825-57150661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
230-497
               

               
Cow position:
               
chr5:64591937-64592205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
175, 207
               

               
Conread position:
               
230-538
               

               
Cow position:
               
chr5:50533230-50533545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
166, 87
               

               
Conread position:
               
233-349
               

               
Cow position:
               
chr5:1946985-1946870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
234-393
               

               
Cow position:
               
chr5:30562085-30561927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
234-495
               

               
Cow position:
               
chr5:53947050-53946786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
234-516
               

               
Cow position:
               
chr5:41452518-41452798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
161, 87
               

               
Conread position:
               
236-397
               

               
Cow position:
               
chr5:17566286-17566447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
237-452
               

               
Cow position:
               
chr5:61492243-61492035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
239-392
               

               
Cow position:
               
chr5:65679826-65679974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
239-490
               

               
Cow position:
               
chr5:54090185-54089938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
239-500
               

               
Cow position:
               
chr5:37814775-37814507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
178, 233
               

               
Conread position:
               
240-477
               

               
Cow position:
               
chr5:15479272-15479033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 5
               

               
Conread position:
               
240-487
               

               
Cow position:
               
chr5:3281982-3281733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
156, 5
               

               
Conread position:
               
240-495
               

               
Cow position:
               
chr5:57419647-57419904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
215, 5
               

               
Conread position:
               
240-538
               

               
Cow position:
               
chr5:53855853-53855541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
85, 5
               

               
Conread position:
               
241-391
               

               
Cow position:
               
chr5:25020623-25020770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
241-393
               

               
Cow position:
               
chr5:63656626-63656472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 124
               

               
Conread position:
               
241-413
               

               
Cow position:
               
chr5:23209103-23208930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
165, 8
               

               
Conread position:
               
241-446
               

               
Cow position:
               
chr5:61455990-61455787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
241-456
               

               
Cow position:
               
chr5:11769416-11769200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
150, 94
               

               
Conread position:
               
241-485
               

               
Cow position:
               
chr5:61912161-61912414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
102, 17
               

               
Conread position:
               
241-540
               

               
Cow position:
               
chr5:34887049-34887362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
242-381
               

               
Cow position:
               
chr5:60948278-60948140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 81
               

               
Conread position:
               
242-421
               

               
Cow position:
               
chr5:3589173-3588993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
144, 67
               

               
Conread position:
               
242-452
               

               
Cow position:
               
chr5:63024878-63025104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr5:57526783-57527007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
213, 51
               

               
Conread position:
               
242-498
               

               
Cow position:
               
chr5:51151213-51151473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
242-501
               

               
Cow position:
               
chr5:14920781-14921048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 127
               

               
Conread position:
               
242-540
               

               
Cow position:
               
chr5:11427089-11427406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
243-391
               

               
Cow position:
               
chr5:65197535-65197684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
244-360
               

               
Cow position:
               
chr5:30638434-30638551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
244-392
               

               
Cow position:
               
chr5:18062175-18062323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
244-431
               

               
Cow position:
               
chr5:69099865-69099675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
244-434
               

               
Cow position:
               
chr5:24175519-24175321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
244-540
               

               
Cow position:
               
chr5:15426682-15426361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
135, 115
               

               
Conread position:
               
245-326
               

               
Cow position:
               
chr5:1090679-1090760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
82
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-326
               

               
Cow position:
               
chr5:8136614-8136533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
82
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-330
               

               
Cow position:
               
chr5:38079512-38079428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
245-330
               

               
Cow position:
               
chr5:54154060-54154144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
245-333
               

               
Cow position:
               
chr5:29599403-29599491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-333
               

               
Cow position:
               
chr5:49207184-49207272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-335
               

               
Cow position:
               
chr5:21721327-21721417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-337
               

               
Cow position:
               
chr5:57785653-57785560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
245-337
               

               
Cow position:
               
chr5:60207850-60207759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
245-343
               

               
Cow position:
               
chr5:18091147-18091049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-343
               

               
Cow position:
               
chr5:60126833-60126735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-346
               

               
Cow position:
               
chr5:17644485-17644586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-346
               

               
Cow position:
               
chr5:35394290-35394391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-348
               

               
Cow position:
               
chr5:48061975-48062077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
245-356
               

               
Cow position:
               
chr5:4956469-4956580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-356
               

               
Cow position:
               
chr5:24915384-24915495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-357
               

               
Cow position:
               
chr5:4336435-4336328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
245-357
               

               
Cow position:
               
chr5:4347561-4347673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-357
               

               
Cow position:
               
chr5:19079392-19079283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
245-357
               

               
Cow position:
               
chr5:70353840-70353953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
245-358
               

               
Cow position:
               
chr5:5127243-5127134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
245-358
               

               
Cow position:
               
chr5:53980611-53980724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-358
               

               
Cow position:
               
chr5:62011826-62011713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-359
               

               
Cow position:
               
chr5:1693945-1694059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chr5:16185521-16185406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chr5:20882481-20882596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chr5:29149031-29148919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chr5:36823026-36822915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chr5:44734582-44734697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chr5:45037392-45037278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chr5:57744780-57744896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
245-361
               

               
Cow position:
               
chr5:38647783-38647667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-362
               

               
Cow position:
               
chr5:34288109-34288224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
245-363
               

               
Cow position:
               
chr5:21003457-21003339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
245-365
               

               
Cow position:
               
chr5:4864685-4864567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
245-366
               

               
Cow position:
               
chr5:35190253-35190132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-367
               

               
Cow position:
               
chr5:38040421-38040543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-367
               

               
Cow position:
               
chr5:51233876-51233998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-368
               

               
Cow position:
               
chr5:55850023-55849905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
245-370
               

               
Cow position:
               
chr5:54312744-54312619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-372
               

               
Cow position:
               
chr5:5847703-5847829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
245-374
               

               
Cow position:
               
chr5:46704155-46704285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 99
               

               
Conread position:
               
245-374
               

               
Cow position:
               
chr5:55942236-55942365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-376
               

               
Cow position:
               
chr5:54750950-54750819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-379
               

               
Cow position:
               
chr5:2240848-2240980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
245-379
               

               
Cow position:
               
chr5:17604989-17605125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
245-379
               

               
Cow position:
               
chr5:65050068-65050202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 79
               

               
Conread position:
               
245-380
               

               
Cow position:
               
chr5:20212103-20211970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
245-381
               

               
Cow position:
               
chr5:26723590-26723455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
245-384
               

               
Cow position:
               
chr5:3743463-3743326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
245-385
               

               
Cow position:
               
chr5:5016568-5016432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
245-386
               

               
Cow position:
               
chr5:12300054-12299913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-387
               

               
Cow position:
               
chr5:44810096-44810238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-388
               

               
Cow position:
               
chr5:44163225-44163369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
245-388
               

               
Cow position:
               
chr5:61049475-61049332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
245-389
               

               
Cow position:
               
chr5:56613420-56613565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
245-389
               

               
Cow position:
               
chr5:60908807-60908665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr5:2469069-2469209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr5:6520153-6520009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr5:34914910-34915055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr5:56428173-56428313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr5:67634371-67634519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
245-391
               

               
Cow position:
               
chr5:24069530-24069387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
245-391
               

               
Cow position:
               
chr5:27293741-27293887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-391
               

               
Cow position:
               
chr5:55129486-55129340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-392
               

               
Cow position:
               
chr5:35513358-35513211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-392
               

               
Cow position:
               
chr5:51298568-51298717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
245-393
               

               
Cow position:
               
chr5:56860584-56860442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
245-394
               

               
Cow position:
               
chr5:9233845-9233995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
245-394
               

               
Cow position:
               
chr5:52853114-52852965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-397
               

               
Cow position:
               
chr5:59627243-59627091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-398
               

               
Cow position:
               
chr5:15364412-15364259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
245-400
               

               
Cow position:
               
chr5:4226489-4226335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
245-401
               

               
Cow position:
               
chr5:17104993-17104839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
147, 82
               

               
Conread position:
               
245-405
               

               
Cow position:
               
chr5:69383396-69383238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
245-406
               

               
Cow position:
               
chr5:17384013-17384169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
245-406
               

               
Cow position:
               
chr5:56287359-56287520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
130, 138
               

               
Conread position:
               
245-406
               

               
Cow position:
               
chr5:56334369-56334526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
245-408
               

               
Cow position:
               
chr5:25597976-25597816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 100
               

               
Conread position:
               
245-415
               

               
Cow position:
               
chr5:61875680-61875515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
148, 99
               

               
Conread position:
               
245-419
               

               
Cow position:
               
chr5:38739260-38739430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 136
               

               
Conread position:
               
245-423
               

               
Cow position:
               
chr5:22667215-22667042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
245-423
               

               
Cow position:
               
chr5:57101381-57101561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
147, 22
               

               
Conread position:
               
245-424
               

               
Cow position:
               
chr5:54875552-54875736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
245-424
               

               
Cow position:
               
chr5:57686594-57686777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
245-425
               

               
Cow position:
               
chr5:41981511-41981333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
141, 84
               

               
Conread position:
               
245-428
               

               
Cow position:
               
chr5:31052523-31052345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
245-428
               

               
Cow position:
               
chr5:35982592-35982781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
245-429
               

               
Cow position:
               
chr5:17602062-17602242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
156, 92
               

               
Conread position:
               
245-429
               

               
Cow position:
               
chr5:49341906-49342090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
143, 169
               

               
Conread position:
               
245-430
               

               
Cow position:
               
chr5:50101231-50101420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
245-431
               

               
Cow position:
               
chr5:55795823-55796008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 153
               

               
Conread position:
               
245-432
               

               
Cow position:
               
chr5:72006346-72006537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
245-433
               

               
Cow position:
               
chr5:52001480-52001666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
245-434
               

               
Cow position:
               
chr5:6444012-6444197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
245-434
               

               
Cow position:
               
chr5:36839102-36838908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
147, 23
               

               
Conread position:
               
245-434
               

               
Cow position:
               
chr5:67118563-67118372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
245-438
               

               
Cow position:
               
chr5:49501681-49501875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 156
               

               
Conread position:
               
245-442
               

               
Cow position:
               
chr5:20994943-20995149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
245-445
               

               
Cow position:
               
chr5:20288117-20288320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
22, 190
               

               
Conread position:
               
245-445
               

               
Cow position:
               
chr5:57156171-57156371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
115, 9
               

               
Conread position:
               
245-447
               

               
Cow position:
               
chr5:63059204-63059010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
149, 81
               

               
Conread position:
               
245-451
               

               
Cow position:
               
chr5:7012708-7012911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
245-452
               

               
Cow position:
               
chr5:41935514-41935721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
245-454
               

               
Cow position:
               
chr5:30805307-30805102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chr5:19752445-19752237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chr5:50713613-50713839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chr5:57755892-57756099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
149, 60
               

               
Conread position:
               
245-460
               

               
Cow position:
               
chr5:52728877-52729088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
245-471
               

               
Cow position:
               
chr5:56548713-56548491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
187, 15
               

               
Conread position:
               
245-474
               

               
Cow position:
               
chr5:35459150-35459386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
245-476
               

               
Cow position:
               
chr5:26094023-26094254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
150, 180
               

               
Conread position:
               
245-476
               

               
Cow position:
               
chr5:62378923-62378699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
213, 82
               

               
Conread position:
               
245-476
               

               
Cow position:
               
chr5:71015742-71015972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
99, 141
               

               
Conread position:
               
245-477
               

               
Cow position:
               
chr5:35976653-35976428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
245-477
               

               
Cow position:
               
chr5:46129532-46129755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
245-477
               

               
Cow position:
               
chr5:47323605-47323372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 107
               

               
Conread position:
               
245-477
               

               
Cow position:
               
chr5:49685134-49685363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 20
               

               
Conread position:
               
245-477
               

               
Cow position:
               
chr5:54086681-54086450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 80
               

               
Conread position:
               
245-477
               

               
Cow position:
               
chr5:62985655-62985435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
245-480
               

               
Cow position:
               
chr5:66551753-66551998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
245-482
               

               
Cow position:
               
chr5:12866685-12866917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
191, 76
               

               
Conread position:
               
245-482
               

               
Cow position:
               
chr5:26476875-26477109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
144, 114
               

               
Conread position:
               
245-483
               

               
Cow position:
               
chr5:27179799-27179564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
229, 27
               

               
Conread position:
               
245-486
               

               
Cow position:
               
chr5:12557144-12557393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
99, 236
               

               
Conread position:
               
245-487
               

               
Cow position:
               
chr5:22242622-22242876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
66, 80
               

               
Conread position:
               
245-490
               

               
Cow position:
               
chr5:41294224-41293974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
245-491
               

               
Cow position:
               
chr5:18289265-18289023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
245-491
               

               
Cow position:
               
chr5:59872937-59873195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
245-492
               

               
Cow position:
               
chr5:12434686-12434427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
136, 237
               

               
Conread position:
               
245-492
               

               
Cow position:
               
chr5:64697925-64697676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 83
               

               
Conread position:
               
245-493
               

               
Cow position:
               
chr5:35126198-35125945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
131, 240
               

               
Conread position:
               
245-494
               

               
Cow position:
               
chr5:17768007-17768253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
245-494
               

               
Cow position:
               
chr5:54375359-54375615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 234
               

               
Conread position:
               
245-494
               

               
Cow position:
               
chr5:60183949-60183691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
10, 236
               

               
Conread position:
               
245-495
               

               
Cow position:
               
chr5:38076340-38076594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
145, 201
               

               
Conread position:
               
245-495
               

               
Cow position:
               
chr5:56877625-56877377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:991617-991354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
52, 163
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:1987757-1987506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:7698143-7697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
209, 148
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:12322662-12322913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:19524043-19523785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:32338823-32339076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:40356715-40356979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
142, 48
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:64175983-64176229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
209, 149
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chr5:74610559-74610803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
229, 72
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:11229530-11229782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:19335638-19335900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:21617600-21617345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:24996078-24996336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:25035115-25035356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
210, 82
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:28224595-28224339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 56
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:29771671-29771405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 211
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:30949772-30950029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 184
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:35208404-35208153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
184, 84
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:37255192-37255444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 199
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:37646401-37646659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:40109635-40109386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 70
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:41545750-41546002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
68, 88
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:44028166-44028414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:44053911-44054147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:52165036-52165292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 41
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:54767766-54768023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 117
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:55756272-55756544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:55956055-55955796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:55966740-55966992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 22
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:56071003-56070743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 232
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:56317432-56317185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 80
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:57265761-57266007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 191
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:61726104-61725860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:66972572-66972314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chr5:70951747-70951989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
206, 9
               

               
Conread position:
               
245-510
               

               
Cow position:
               
chr5:65776241-65776511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
26, 153
               

               
Conread position:
               
245-511
               

               
Cow position:
               
chr5:6503738-6504010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
143, 201
               

               
Conread position:
               
245-511
               

               
Cow position:
               
chr5:12673335-12673590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
243, 82
               

               
Conread position:
               
245-511
               

               
Cow position:
               
chr5:35763398-35763148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
245-516
               

               
Cow position:
               
chr5:57101640-57101911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
245-523
               

               
Cow position:
               
chr5:44446722-44447010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 234
               

               
Conread position:
               
245-524
               

               
Cow position:
               
chr5:73167869-73168141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
227, 10
               

               
Conread position:
               
245-527
               

               
Cow position:
               
chr5:25495215-25495497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
197, 113
               

               
Conread position:
               
245-527
               

               
Cow position:
               
chr5:69337963-69337685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 151
               

               
Conread position:
               
245-530
               

               
Cow position:
               
chr5:4031843-4032149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
245-530
               

               
Cow position:
               
chr5:35246967-35247265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 130
               

               
Conread position:
               
245-530
               

               
Cow position:
               
chr5:55232670-55232947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
245-533
               

               
Cow position:
               
chr5:20422051-20422331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
198, 10
               

               
Conread position:
               
245-534
               

               
Cow position:
               
chr5:21039841-21040124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 10
               

               
Conread position:
               
245-535
               

               
Cow position:
               
chr5:41165231-41164934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 232
               

               
Conread position:
               
245-536
               

               
Cow position:
               
chr5:45397712-45397418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 56
               

               
Conread position:
               
245-537
               

               
Cow position:
               
chr5:1396742-1396464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
210, 26
               

               
Conread position:
               
245-537
               

               
Cow position:
               
chr5:39937258-39936941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
148, 103
               

               
Conread position:
               
245-537
               

               
Cow position:
               
chr5:42064348-42064041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 288
               

               
Conread position:
               
245-538
               

               
Cow position:
               
chr5:9893981-9894289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 10
               

               
Conread position:
               
245-539
               

               
Cow position:
               
chr5:44993906-44994201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 82
               

               
Conread position:
               
245-539
               

               
Cow position:
               
chr5:58519273-58519568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
206, 140
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:58790-59093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:458631-458317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 64
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:3639354-3639646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 52
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:3771989-3771682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 90
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:4280591-4280299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 154
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:5110926-5111241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:5257145-5257461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
141, 236
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:6045439-6045123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
94, 236
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:12149688-12149381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:14314672-14314357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 164
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:15364025-15363726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
139, 178
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:18574317-18574006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
11, 70
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:23168683-23168983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 230
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:26097431-26097131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
210, 10
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:28302600-28302904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
103, 185
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:30253884-30253577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 231
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:30629014-30629322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:32394742-32394436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
208, 159
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:34528689-34528397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:35685080-35684770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:35969675-35969378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 104
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:36855349-36855048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 154
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:36868878-36868581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 51
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:37808520-37808829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 184
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:39447389-39447695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:42845448-42845765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 296
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:43457388-43457683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:43929593-43929898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
148, 102
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:44796590-44796883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 140
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:45225673-45225989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:45845545-45845860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:47601955-47601652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
213, 144
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:50600191-50599889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:51053506-51053812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 119
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:54311479-54311168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 290
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:54350218-54350525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 286
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:56028398-56028695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
208, 99
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:56524317-56524007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 210
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:59325698-59325993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 102
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:60210000-60210304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
143, 207
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:61810914-61810628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
211, 97
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:64823186-64823477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:65753004-65752692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 291
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:66339218-66338919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:66366658-66366366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:69461478-69461170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:69731643-69731353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 82
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:71494964-71494653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 190
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:72564907-72564597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 251
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:72903093-72903392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
213, 84
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chr5:74858718-74858409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
148, 202
               

               
Conread position:
               
246-318
               

               
Cow position:
               
chr5:32975900-32975828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
73
               

               
Alignm identity:
               
69
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-331
               

               
Cow position:
               
chr5:51901961-51902046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-356
               

               
Cow position:
               
chr5:26894577-26894687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-357
               

               
Cow position:
               
chr5:64843829-64843940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-363
               

               
Cow position:
               
chr5:51490460-51490577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-365
               

               
Cow position:
               
chr5:60595988-60596108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 79
               

               
Conread position:
               
246-365
               

               
Cow position:
               
chr5:75760133-75760251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
246-372
               

               
Cow position:
               
chr5:26167563-26167437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-373
               

               
Cow position:
               
chr5:7177293-7177166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-374
               

               
Cow position:
               
chr5:12738417-12738541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
246-374
               

               
Cow position:
               
chr5:38169037-38168908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
246-382
               

               
Cow position:
               
chr5:42753047-42752916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
246-388
               

               
Cow position:
               
chr5:4166782-4166642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
246-388
               

               
Cow position:
               
chr5:44874334-44874193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
246-390
               

               
Cow position:
               
chr5:5760174-5760315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
246-391
               

               
Cow position:
               
chr5:51490106-51490248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
246-417
               

               
Cow position:
               
chr5:52108127-52108296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
246-419
               

               
Cow position:
               
chr5:9369130-9369298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
246-423
               

               
Cow position:
               
chr5:22795356-22795178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
246-434
               

               
Cow position:
               
chr5:15471071-15470886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
153, 76
               

               
Conread position:
               
246-434
               

               
Cow position:
               
chr5:27188257-27188079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
246-434
               

               
Cow position:
               
chr5:56338879-56339066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
246-441
               

               
Cow position:
               
chr5:63832070-63831874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 135
               

               
Conread position:
               
246-446
               

               
Cow position:
               
chr5:63241119-63240918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
246-451
               

               
Cow position:
               
chr5:28035884-28035678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
151, 24
               

               
Conread position:
               
246-452
               

               
Cow position:
               
chr5:22446053-22445850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 86
               

               
Conread position:
               
246-460
               

               
Cow position:
               
chr5:67212502-67212284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr5:43403045-43402812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
148, 21
               

               
Conread position:
               
246-477
               

               
Cow position:
               
chr5:29097509-29097274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
145, 32
               

               
Conread position:
               
246-477
               

               
Cow position:
               
chr5:47756912-47756683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
155, 11
               

               
Conread position:
               
246-477
               

               
Cow position:
               
chr5:50575925-50575692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 48
               

               
Conread position:
               
246-478
               

               
Cow position:
               
chr5:14473261-14473507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
246-486
               

               
Cow position:
               
chr5:58490869-58490616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
246-492
               

               
Cow position:
               
chr5:17999354-17999603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
208, 82
               

               
Conread position:
               
246-493
               

               
Cow position:
               
chr5:54060418-54060167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 89
               

               
Conread position:
               
246-495
               

               
Cow position:
               
chr5:46512627-46512874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
211, 61
               

               
Conread position:
               
246-496
               

               
Cow position:
               
chr5:16214829-16214575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 247
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr5:7755429-7755675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
208, 19
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr5:16206013-16206268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 106
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr5:43858278-43858545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
140, 73
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr5:49440734-49440985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
147, 21
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr5:66582105-66581850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr5:68719009-68718763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
142, 74
               

               
Conread position:
               
246-516
               

               
Cow position:
               
chr5:2309416-2309695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 21
               

               
Conread position:
               
246-521
               

               
Cow position:
               
chr5:45574762-45574475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
111, 235
               

               
Conread position:
               
246-526
               

               
Cow position:
               
chr5:60599063-60599326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
246-537
               

               
Cow position:
               
chr5:38833263-38832958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 99
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chr5:14903926-14904238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
91, 156
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chr5:16937887-16938172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
245, 48
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chr5:34625102-34624804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 204
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chr5:57737241-57736950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 139
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chr5:74643536-74643826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
200, 82
               

               
Conread position:
               
247-326
               

               
Cow position:
               
chr5:4981591-4981512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
80
               

               
Alignm identity:
               
72
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-340
               

               
Cow position:
               
chr5:65745625-65745717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
247-354
               

               
Cow position:
               
chr5:62996098-62995991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-360
               

               
Cow position:
               
chr5:38382660-38382771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
247-365
               

               
Cow position:
               
chr5:44722372-44722489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
247-386
               

               
Cow position:
               
chr5:11562581-11562721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
247-388
               

               
Cow position:
               
chr5:53935408-53935547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
247-390
               

               
Cow position:
               
chr5:2827514-2827372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
247-390
               

               
Cow position:
               
chr5:39035919-39035778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
247-392
               

               
Cow position:
               
chr5:55965753-55965898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-392
               

               
Cow position:
               
chr5:60514887-60515032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
247-392
               

               
Cow position:
               
chr5:60523873-60523729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
118, 80
               

               
Conread position:
               
247-392
               

               
Cow position:
               
chr5:65552576-65552712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
247-394
               

               
Cow position:
               
chr5:33155955-33155813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
247-401
               

               
Cow position:
               
chr5:52138078-52137921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
247-406
               

               
Cow position:
               
chr5:16939453-16939610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
247-406
               

               
Cow position:
               
chr5:24946381-24946223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
247-428
               

               
Cow position:
               
chr5:68537528-68537707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
151, 8
               

               
Conread position:
               
247-434
               

               
Cow position:
               
chr5:45405185-45404995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-434
               

               
Cow position:
               
chr5:58555278-58555094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
136, 162
               

               
Conread position:
               
247-452
               

               
Cow position:
               
chr5:63150027-63150230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chr5:38689398-38689611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
156, 24
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chr5:57994738-57994933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chr5:59395803-59395589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chr5:61771260-61771046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-477
               

               
Cow position:
               
chr5:3204967-3204744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
208, 22
               

               
Conread position:
               
247-477
               

               
Cow position:
               
chr5:65886870-65887099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
208, 23
               

               
Conread position:
               
247-481
               

               
Cow position:
               
chr5:35229003-35229223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
247-482
               

               
Cow position:
               
chr5:6838938-6839172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
247-482
               

               
Cow position:
               
chr5:61829723-61829967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-483
               

               
Cow position:
               
chr5:17554892-17555130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
247-485
               

               
Cow position:
               
chr5:17062940-17063190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
94, 125
               

               
Conread position:
               
247-485
               

               
Cow position:
               
chr5:37189956-37190196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-486
               

               
Cow position:
               
chr5:45419996-45420231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
247-492
               

               
Cow position:
               
chr5:14550443-14550690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
208, 138
               

               
Conread position:
               
247-495
               

               
Cow position:
               
chr5:37069024-37068784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
146, 59
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:12902058-12901802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
161, 148
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:16893631-16893885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:30276831-30276584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
210, 142
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:33560593-33560847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 149
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:50215423-50215669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
211, 26
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:50723187-50722935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
208, 150
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:53710548-53710807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:62107345-62107604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr5:63426864-63427119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
144, 247
               

               
Conread position:
               
247-511
               

               
Cow position:
               
chr5:54048211-54048479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
247-534
               

               
Cow position:
               
chr5:6683226-6683509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
208, 85
               

               
Conread position:
               
247-537
               

               
Cow position:
               
chr5:28230305-28229996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
96, 237
               

               
Conread position:
               
247-539
               

               
Cow position:
               
chr5:30845249-30844947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:1247404-1247112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:11668044-11668343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 138
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:21829008-21828700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 53
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:29060795-29061089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
205, 10
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:34463439-34463750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:50482719-50483026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:53055420-53055718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
128, 200
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chr5:66257779-66257477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
248-342
               

               
Cow position:
               
chr5:38418656-38418563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
248-360
               

               
Cow position:
               
chr5:16668837-16668725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
248-387
               

               
Cow position:
               
chr5:52723713-52723578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
248-392
               

               
Cow position:
               
chr5:50871957-50871808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
248-419
               

               
Cow position:
               
chr5:61007203-61007034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
248-451
               

               
Cow position:
               
chr5:40559773-40559574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
248-473
               

               
Cow position:
               
chr5:71845779-71846000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
149, 76
               

               
Conread position:
               
248-483
               

               
Cow position:
               
chr5:33834180-33833947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
215, 48
               

               
Conread position:
               
248-486
               

               
Cow position:
               
chr5:22188809-22188560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
248-486
               

               
Cow position:
               
chr5:64140678-64140429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
248-488
               

               
Cow position:
               
chr5:43604277-43604044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
248-494
               

               
Cow position:
               
chr5:23678563-23678814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 37
               

               
Conread position:
               
248-496
               

               
Cow position:
               
chr5:60016305-60016055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
141, 79
               

               
Conread position:
               
248-497
               

               
Cow position:
               
chr5:35826741-35826490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
144, 13
               

               
Conread position:
               
248-497
               

               
Cow position:
               
chr5:45273362-45273614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
207, 22
               

               
Conread position:
               
248-497
               

               
Cow position:
               
chr5:57327940-57327683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chr5:9089888-9090188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 34
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chr5:43992464-43992156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 287
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chr5:47316834-47317134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
207, 148
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chr5:57074191-57074499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 183
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chr5:63987306-63987611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 73
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chr5:72045537-72045805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
240, 79
               

               
Conread position:
               
249-336
               

               
Cow position:
               
chr5:34918485-34918398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-351
               

               
Cow position:
               
chr5:19298540-19298642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-356
               

               
Cow position:
               
chr5:30236012-30235912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
249-356
               

               
Cow position:
               
chr5:40122471-40122578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-357
               

               
Cow position:
               
chr5:20812684-20812577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
249-357
               

               
Cow position:
               
chr5:51125870-51125978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-357
               

               
Cow position:
               
chr5:56434020-56433911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
249-361
               

               
Cow position:
               
chr5:49821567-49821455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-362
               

               
Cow position:
               
chr5:695001-694890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
249-365
               

               
Cow position:
               
chr5:37842140-37842256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-366
               

               
Cow position:
               
chr5:53145613-53145730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-368
               

               
Cow position:
               
chr5:42623041-42623158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
249-369
               

               
Cow position:
               
chr5:54436892-54436775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
249-374
               

               
Cow position:
               
chr5:35647482-35647357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-376
               

               
Cow position:
               
chr5:26147730-26147603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-376
               

               
Cow position:
               
chr5:47743766-47743640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
249-381
               

               
Cow position:
               
chr5:56361932-56361803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
249-391
               

               
Cow position:
               
chr5:50824731-50824589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-416
               

               
Cow position:
               
chr5:57489811-57489973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
249-421
               

               
Cow position:
               
chr5:26549001-26549175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
249-421
               

               
Cow position:
               
chr5:33273832-33273657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
249-423
               

               
Cow position:
               
chr5:34914413-34914590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
134, 153
               

               
Conread position:
               
249-427
               

               
Cow position:
               
chr5:48178244-48178426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
249-430
               

               
Cow position:
               
chr5:2851729-2851546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
249-433
               

               
Cow position:
               
chr5:56153754-56153569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
149, 64
               

               
Conread position:
               
249-436
               

               
Cow position:
               
chr5:56517243-56517054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
249-445
               

               
Cow position:
               
chr5:29515366-29515553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
160, 80
               

               
Conread position:
               
249-445
               

               
Cow position:
               
chr5:40242182-40241985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chr5:30247388-30247587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chr5:42782585-42782780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
249-452
               

               
Cow position:
               
chr5:20843255-20843464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
249-452
               

               
Cow position:
               
chr5:59626833-59627038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
249-455
               

               
Cow position:
               
chr5:69636363-69636168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
249-456
               

               
Cow position:
               
chr5:1165304-1165106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
249-469
               

               
Cow position:
               
chr5:38717448-38717241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
249-476
               

               
Cow position:
               
chr5:1687976-1688202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 83
               

               
Conread position:
               
249-478
               

               
Cow position:
               
chr5:23529144-23529370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
249-478
               

               
Cow position:
               
chr5:59384551-59384784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
165, 81
               

               
Conread position:
               
249-482
               

               
Cow position:
               
chr5:359800-360041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
123, 154
               

               
Conread position:
               
249-483
               

               
Cow position:
               
chr5:46681581-46681813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
249-485
               

               
Cow position:
               
chr5:6895988-6896227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 83
               

               
Conread position:
               
249-486
               

               
Cow position:
               
chr5:36038862-36039105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
249-486
               

               
Cow position:
               
chr5:64523724-64523968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
136, 171
               

               
Conread position:
               
249-488
               

               
Cow position:
               
chr5:36650690-36650446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
249-495
               

               
Cow position:
               
chr5:3582699-3582464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
249-496
               

               
Cow position:
               
chr5:17028234-17027985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
145, 214
               

               
Conread position:
               
249-496
               

               
Cow position:
               
chr5:23366626-23366878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
249-496
               

               
Cow position:
               
chr5:27411262-27411504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
205, 129
               

               
Conread position:
               
249-496
               

               
Cow position:
               
chr5:42050690-42050439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
141, 12
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:7193555-7193318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:8820874-8821121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:14629666-14629926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
46, 235
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:17086882-17087138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
144, 65
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:25230880-25231117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:29844419-29844166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:39875263-39875010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
138, 164
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:44726195-44726439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
204, 130
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:49920063-49919811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
110, 133
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:55177025-55176777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:56680395-56680134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:60747142-60747389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:61487973-61488222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:62639043-62638794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 112
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr5:64026880-64027121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
204, 144
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr5:1949919-1950187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
249-516
               

               
Cow position:
               
chr5:20128192-20127922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
249-516
               

               
Cow position:
               
chr5:76366156-76366424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
185, 147
               

               
Conread position:
               
249-517
               

               
Cow position:
               
chr5:28945921-28946200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
135, 98
               

               
Conread position:
               
249-518
               

               
Cow position:
               
chr5:47696311-47696576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
146, 79
               

               
Conread position:
               
249-519
               

               
Cow position:
               
chr5:37757700-37757952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
239, 49
               

               
Conread position:
               
249-526
               

               
Cow position:
               
chr5:37646220-37645932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
69, 176
               

               
Conread position:
               
249-534
               

               
Cow position:
               
chr5:26990527-26990239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 39
               

               
Conread position:
               
249-535
               

               
Cow position:
               
chr5:32378966-32378709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
239, 47
               

               
Conread position:
               
249-537
               

               
Cow position:
               
chr5:31660518-31660799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 150
               

               
Conread position:
               
249-537
               

               
Cow position:
               
chr5:43923023-43923311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
249-538
               

               
Cow position:
               
chr5:55068845-55068543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 200
               

               
Conread position:
               
249-538
               

               
Cow position:
               
chr5:57767848-57768135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:4710013-4710309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 79
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:7723804-7723506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 139
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:16025329-16025625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
149, 78
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:18899112-18898819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 42
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:22643093-22643382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 68
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:26467767-26467455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 232
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:27419590-27419885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
137, 167
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:32975421-32975716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
205, 64
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:34562156-34561844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
95, 231
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:37377992-37377711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:39258644-39258369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 71
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:41713438-41713145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:46322664-46322976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
168, 95
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:50943017-50943318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:56014870-56014570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
144, 200
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:65941112-65941418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:68329849-68330147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:71454473-71454759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
238, 132
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chr5:72895825-72895528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 175
               

               
Conread position:
               
250-363
               

               
Cow position:
               
chr5:51277715-51277828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-371
               

               
Cow position:
               
chr5:49259901-49260019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
250-408
               

               
Cow position:
               
chr5:50526400-50526243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
250-415
               

               
Cow position:
               
chr5:57230200-57230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
250-453
               

               
Cow position:
               
chr5:38738922-38738734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
250-455
               

               
Cow position:
               
chr5:63234691-63234893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
250-456
               

               
Cow position:
               
chr5:12760983-12761180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
250-482
               

               
Cow position:
               
chr5:55019430-55019196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 173
               

               
Conread position:
               
250-491
               

               
Cow position:
               
chr5:18554032-18553793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
250-495
               

               
Cow position:
               
chr5:26594959-26595214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
250-496
               

               
Cow position:
               
chr5:58446945-58446691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 230
               

               
Conread position:
               
250-497
               

               
Cow position:
               
chr5:19278569-19278813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
250-497
               

               
Cow position:
               
chr5:29352989-29353241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
250-497
               

               
Cow position:
               
chr5:34441642-34441904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 235
               

               
Conread position:
               
250-497
               

               
Cow position:
               
chr5:48758080-48757833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
250-498
               

               
Cow position:
               
chr5:4927427-4927681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
250-507
               

               
Cow position:
               
chr5:49474406-49474668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 227
               

               
Conread position:
               
250-511
               

               
Cow position:
               
chr5:40387744-40388001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
250-520
               

               
Cow position:
               
chr5:13537270-13537007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 51
               

               
Conread position:
               
250-539
               

               
Cow position:
               
chr5:26262541-26262839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 73
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chr5:4221116-4220816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 105
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chr5:5855996-5855715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chr5:12873888-12873579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chr5:62172549-62172254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 11
               

               
Conread position:
               
251-341
               

               
Cow position:
               
chr5:22386922-22387012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-392
               

               
Cow position:
               
chr5:46540919-46541059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
251-427
               

               
Cow position:
               
chr5:52083480-52083297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
251-454
               

               
Cow position:
               
chr5:46022927-46023123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
251-490
               

               
Cow position:
               
chr5:31434419-31434182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
251-497
               

               
Cow position:
               
chr5:13717434-13717684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 10
               

               
Conread position:
               
251-497
               

               
Cow position:
               
chr5:65967594-65967841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
141, 175
               

               
Conread position:
               
251-510
               

               
Cow position:
               
chr5:59082057-59082321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 194
               

               
Conread position:
               
251-511
               

               
Cow position:
               
chr5:67932335-67932591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
137, 106
               

               
Conread position:
               
251-515
               

               
Cow position:
               
chr5:7057265-7057541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
204, 57
               

               
Conread position:
               
251-535
               

               
Cow position:
               
chr5:20779261-20779541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
140, 91
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chr5:20783759-20783460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 97
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chr5:29828183-29827889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chr5:75436751-75437061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
252-341
               

               
Cow position:
               
chr5:29979822-29979911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-388
               

               
Cow position:
               
chr5:4267806-4267670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-478
               

               
Cow position:
               
chr5:51935325-51935098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 59
               

               
Conread position:
               
252-497
               

               
Cow position:
               
chr5:16179375-16179638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
252-497
               

               
Cow position:
               
chr5:57575909-57575656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
90, 228
               

               
Conread position:
               
252-497
               

               
Cow position:
               
chr5:57934972-57935222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 225
               

               
Conread position:
               
252-497
               

               
Cow position:
               
chr5:65932807-65933043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
203, 121
               

               
Conread position:
               
252-516
               

               
Cow position:
               
chr5:67244054-67243798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
252-521
               

               
Cow position:
               
chr5:30233044-30232770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
252-521
               

               
Cow position:
               
chr5:48405042-48405319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
252-537
               

               
Cow position:
               
chr5:4218993-4218716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 37
               

               
Conread position:
               
252-539
               

               
Cow position:
               
chr5:6528821-6528517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 194
               

               
Conread position:
               
252-540
               

               
Cow position:
               
chr5:58856238-58855939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 65
               

               
Conread position:
               
252-540
               

               
Cow position:
               
chr5:62142812-62142506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 285
               

               
Conread position:
               
253-535
               

               
Cow position:
               
chr5:60715233-60715514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
201, 75
               

               
Conread position:
               
253-540
               

               
Cow position:
               
chr5:27306439-27306154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
144, 109
               

               
Conread position:
               
253-540
               

               
Cow position:
               
chr5:52000353-52000054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 50
               

               
Conread position:
               
254-441
               

               
Cow position:
               
chr5:24136848-24136660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
133, 41
               

               
Conread position:
               
254-516
               

               
Cow position:
               
chr5:27155139-27154892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
161, 49
               

               
Conread position:
               
254-540
               

               
Cow position:
               
chr5:44752173-44752475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
90, 206
               

               
Conread position:
               
255-360
               

               
Cow position:
               
chr5:3677853-3677751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
255-374
               

               
Cow position:
               
chr5:75228066-75228185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
255-398
               

               
Cow position:
               
chr5:19251713-19251568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
255-410
               

               
Cow position:
               
chr5:45186987-45187142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
132, 29
               

               
Conread position:
               
255-420
               

               
Cow position:
               
chr5:60189126-60188957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
255-421
               

               
Cow position:
               
chr5:8736147-8736323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
255-427
               

               
Cow position:
               
chr5:61102849-61102675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
88, 99
               

               
Conread position:
               
255-429
               

               
Cow position:
               
chr5:56212039-56211860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
255-452
               

               
Cow position:
               
chr5:1461222-1461023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
255-459
               

               
Cow position:
               
chr5:12247605-12247818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
139, 39
               

               
Conread position:
               
255-497
               

               
Cow position:
               
chr5:7044572-7044820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 222
               

               
Conread position:
               
255-497
               

               
Cow position:
               
chr5:41009867-41010106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
255-497
               

               
Cow position:
               
chr5:45804193-45803950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
255-497
               

               
Cow position:
               
chr5:50821916-50821669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 121
               

               
Conread position:
               
255-512
               

               
Cow position:
               
chr5:71768371-71768607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
233, 17
               

               
Conread position:
               
255-528
               

               
Cow position:
               
chr5:33265334-33265599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:6286300-6286591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
199, 142
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:8024067-8024357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:15721941-15722219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
198, 120
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:26377535-26377831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:30303024-30302731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
135, 72
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:44847888-44848181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:46509731-46510031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 223
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:53835849-53835550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
120, 52
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:56467822-56467540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 12
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:57626921-57626642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
119, 46
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr5:63992039-63992327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
139, 180
               

               
Conread position:
               
256-354
               

               
Cow position:
               
chr5:35833541-35833443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
256-387
               

               
Cow position:
               
chr5:48918940-48918811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
256-406
               

               
Cow position:
               
chr5:43844531-43844684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
256-430
               

               
Cow position:
               
chr5:40237343-40237171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
128, 113
               

               
Conread position:
               
256-448
               

               
Cow position:
               
chr5:63627403-63627585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
256-503
               

               
Cow position:
               
chr5:42670732-42670976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 54
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr5:27171861-27172111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
197, 91
               

               
Conread position:
               
256-530
               

               
Cow position:
               
chr5:34301048-34300769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
257-388
               

               
Cow position:
               
chr5:21223454-21223324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
257-393
               

               
Cow position:
               
chr5:23527499-23527636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
257-393
               

               
Cow position:
               
chr5:57062395-57062534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
257-403
               

               
Cow position:
               
chr5:20595596-20595449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
257-463
               

               
Cow position:
               
chr5:34050249-34050041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
257-463
               

               
Cow position:
               
chr5:48867333-48867538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
135, 148
               

               
Conread position:
               
257-486
               

               
Cow position:
               
chr5:61914696-61914478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 130
               

               
Conread position:
               
257-530
               

               
Cow position:
               
chr5:64758636-64758921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 272
               

               
Conread position:
               
257-539
               

               
Cow position:
               
chr5:53842425-53842125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
86, 151
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chr5:46798373-46798087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
196, 20
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chr5:47870910-47871215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chr5:59115511-59115216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
198, 16
               

               
Conread position:
               
258-419
               

               
Cow position:
               
chr5:45574235-45574399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
258-434
               

               
Cow position:
               
chr5:61784598-61784774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
258-497
               

               
Cow position:
               
chr5:19813090-19813328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 161
               

               
Conread position:
               
258-497
               

               
Cow position:
               
chr5:28927464-28927702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
258-520
               

               
Cow position:
               
chr5:31561665-31561393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
258-540
               

               
Cow position:
               
chr5:15598108-15598398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
139, 40
               

               
Conread position:
               
258-540
               

               
Cow position:
               
chr5:56518092-56518374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
197, 115
               

               
Conread position:
               
258-540
               

               
Cow position:
               
chr5:64321879-64321584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
168, 22
               

               
Conread position:
               
259-433
               

               
Cow position:
               
chr5:453686-453514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
259-483
               

               
Cow position:
               
chr5:46683823-46684045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
260-374
               

               
Cow position:
               
chr5:12169641-12169754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
260-540
               

               
Cow position:
               
chr5:32955968-32956260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
261-450
               

               
Cow position:
               
chr5:26150294-26150483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
129, 67
               

               
Conread position:
               
261-486
               

               
Cow position:
               
chr5:63964038-63964270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
261-497
               

               
Cow position:
               
chr5:64139687-64139453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
192, 137
               

               
Conread position:
               
261-536
               

               
Cow position:
               
chr5:42744907-42744632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 33
               

               
Conread position:
               
261-540
               

               
Cow position:
               
chr5:11539928-11540208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
193, 23
               

               
Conread position:
               
261-540
               

               
Cow position:
               
chr5:33538001-33537726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 121
               

               
Conread position:
               
261-540
               

               
Cow position:
               
chr5:48009732-48010011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
165, 98
               

               
Conread position:
               
262-389
               

               
Cow position:
               
chr5:56222419-56222545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
262-540
               

               
Cow position:
               
chr5:31640551-31640263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
131, 267
               

               
Conread position:
               
263-486
               

               
Cow position:
               
chr5:63647354-63647576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
192, 33
               

               
Conread position:
               
263-496
               

               
Cow position:
               
chr5:39442422-39442185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
264-476
               

               
Cow position:
               
chr5:6890898-6891110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
264-491
               

               
Cow position:
               
chr5:21534987-21535221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
264-497
               

               
Cow position:
               
chr5:1343731-1343968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
264-497
               

               
Cow position:
               
chr5:7552291-7552532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
264-516
               

               
Cow position:
               
chr5:34184347-34184088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
264-540
               

               
Cow position:
               
chr5:24349231-24348947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 125
               

               
Conread position:
               
264-540
               

               
Cow position:
               
chr5:41609408-41609135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
196, 101
               

               
Conread position:
               
265-389
               

               
Cow position:
               
chr5:55350787-55350913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
265-389
               

               
Cow position:
               
chr5:57736576-57736695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
265-483
               

               
Cow position:
               
chr5:23357452-23357237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
170, 57
               

               
Conread position:
               
265-497
               

               
Cow position:
               
chr5:67540078-67540316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
124, 158
               

               
Conread position:
               
265-538
               

               
Cow position:
               
chr5:21920494-21920205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
265-539
               

               
Cow position:
               
chr5:41129865-41129602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
222, 130
               

               
Conread position:
               
266-540
               

               
Cow position:
               
chr5:65588821-65588543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
267-540
               

               
Cow position:
               
chr5:3492295-3492037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
267-540
               

               
Cow position:
               
chr5:58793486-58793779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 215
               

               
Conread position:
               
268-454
               

               
Cow position:
               
chr5:17267773-17267960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
268-476
               

               
Cow position:
               
chr5:1087079-1087288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
187, 120
               

               
Conread position:
               
268-486
               

               
Cow position:
               
chr5:56636015-56635799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
189, 105
               

               
Conread position:
               
268-497
               

               
Cow position:
               
chr5:36486614-36486378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
268-540
               

               
Cow position:
               
chr5:9390677-9390371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 217
               

               
Conread position:
               
269-390
               

               
Cow position:
               
chr5:39226504-39226626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
269-410
               

               
Cow position:
               
chr5:62415842-62415986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
118, 133
               

               
Conread position:
               
269-486
               

               
Cow position:
               
chr5:32672948-32673163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
189, 21
               

               
Conread position:
               
269-540
               

               
Cow position:
               
chr5:32696704-32696977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
269-540
               

               
Cow position:
               
chr5:47547607-47547882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
186, 22
               

               
Conread position:
               
270-415
               

               
Cow position:
               
chr5:46672323-46672178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
270-477
               

               
Cow position:
               
chr5:61840310-61840099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
270-497
               

               
Cow position:
               
chr5:52644962-52645192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 128
               

               
Conread position:
               
270-540
               

               
Cow position:
               
chr5:4617485-4617209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
270-540
               

               
Cow position:
               
chr5:20407560-20407831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
123, 156
               

               
Conread position:
               
272-495
               

               
Cow position:
               
chr5:65883656-65883887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
272-539
               

               
Cow position:
               
chr5:43737847-43738115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
183, 99
               

               
Conread position:
               
272-540
               

               
Cow position:
               
chr5:31481264-31480990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
126, 172
               

               
Conread position:
               
272-540
               

               
Cow position:
               
chr5:55929060-55928778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 261
               

               
Conread position:
               
276-498
               

               
Cow position:
               
chr5:39695763-39695539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
276-536
               

               
Cow position:
               
chr5:46425743-46426011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
212, 196
               

               
Conread position:
               
276-540
               

               
Cow position:
               
chr5:45472399-45472101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
277-497
               

               
Cow position:
               
chr5:35209366-35209588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
277-499
               

               
Cow position:
               
chr5:57561634-57561402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
113, 125
               

               
Conread position:
               
280-401
               

               
Cow position:
               
chr5:57279492-57279371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
280-433
               

               
Cow position:
               
chr5:55062035-55061880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
280-439
               

               
Cow position:
               
chr5:30419083-30418923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
95, 126
               

               
Conread position:
               
280-440
               

               
Cow position:
               
chr5:37895101-37894940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
280-442
               

               
Cow position:
               
chr5:28814840-28814991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
280-444
               

               
Cow position:
               
chr5:14344990-14345151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
280-450
               

               
Cow position:
               
chr5:34108953-34109121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
280-451
               

               
Cow position:
               
chr5:11965222-11965392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 64
               

               
Conread position:
               
280-477
               

               
Cow position:
               
chr5:64137364-64137161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
280-482
               

               
Cow position:
               
chr5:61809578-61809782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
116, 163
               

               
Conread position:
               
280-492
               

               
Cow position:
               
chr5:33661954-33661750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
194, 116
               

               
Conread position:
               
280-496
               

               
Cow position:
               
chr5:31918750-31918539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
208, 45
               

               
Conread position:
               
280-496
               

               
Cow position:
               
chr5:57591796-57591582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
135, 87
               

               
Conread position:
               
280-496
               

               
Cow position:
               
chr5:61576653-61576429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
116, 132
               

               
Conread position:
               
280-496
               

               
Cow position:
               
chr5:68872301-68872083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
280-497
               

               
Cow position:
               
chr5:28248281-28248064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
192, 163
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chr5:26132989-26133238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
177, 109
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chr5:44049806-44049538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
108, 64
               

               
Conread position:
               
281-395
               

               
Cow position:
               
chr5:49452600-49452486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-423
               

               
Cow position:
               
chr5:51065633-51065496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
284-540
               

               
Cow position:
               
chr5:40039662-40039935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 65
               

               
Conread position:
               
285-434
               

               
Cow position:
               
chr5:63192638-63192788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
285-497
               

               
Cow position:
               
chr5:36255154-36255373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
286-427
               

               
Cow position:
               
chr5:45148268-45148402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
286-496
               

               
Cow position:
               
chr5:48829256-48829046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
188, 96
               

               
Conread position:
               
286-540
               

               
Cow position:
               
chr5:62869940-62870201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
287-388
               

               
Cow position:
               
chr5:14742315-14742214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
287-394
               

               
Cow position:
               
chr5:37713553-37713660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
287-441
               

               
Cow position:
               
chr5:19797075-19796919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
287-482
               

               
Cow position:
               
chr5:64555630-64555433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
109, 120
               

               
Conread position:
               
287-486
               

               
Cow position:
               
chr5:43371094-43371299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
287-498
               

               
Cow position:
               
chr5:34193007-34192785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
287-510
               

               
Cow position:
               
chr5:68264857-68265089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 147
               

               
Conread position:
               
287-540
               

               
Cow position:
               
chr5:33414310-33414573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
288-423
               

               
Cow position:
               
chr5:65883526-65883663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
288-496
               

               
Cow position:
               
chr5:47704026-47704242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
87, 117
               

               
Conread position:
               
288-496
               

               
Cow position:
               
chr5:69520991-69520781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
103, 130
               

               
Conread position:
               
290-540
               

               
Cow position:
               
chr5:16509204-16508926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
291-436
               

               
Cow position:
               
chr5:20371232-20371079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
291-497
               

               
Cow position:
               
chr5:3242384-3242589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
164, 41
               

               
Conread position:
               
293-540
               

               
Cow position:
               
chr5:73080300-73080047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
33, 186
               

               
Conread position:
               
294-495
               

               
Cow position:
               
chr5:33552329-33552519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
164, 97
               

               
Conread position:
               
294-540
               

               
Cow position:
               
chr5:29213032-29212784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 32
               

               
Conread position:
               
296-539
               

               
Cow position:
               
chr5:46122261-46122514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
159, 82
               

               
Conread position:
               
297-432
               

               
Cow position:
               
chr5:38068575-38068710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
297-445
               

               
Cow position:
               
chr5:33654454-33654603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
98, 109
               

               
Conread position:
               
297-447
               

               
Cow position:
               
chr5:60952751-60952597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
297-452
               

               
Cow position:
               
chr5:57639883-57640032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
297-456
               

               
Cow position:
               
chr5:66815481-66815638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
297-457
               

               
Cow position:
               
chr5:37893425-37893264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
297-458
               

               
Cow position:
               
chr5:73167035-73167197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
297-496
               

               
Cow position:
               
chr5:48154374-48154589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
297-496
               

               
Cow position:
               
chr5:65765038-65765240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 83
               

               
Conread position:
               
297-527
               

               
Cow position:
               
chr5:34505835-34506073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
297-529
               

               
Cow position:
               
chr5:52126862-52126629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 83
               

               
Conread position:
               
297-538
               

               
Cow position:
               
chr5:34976751-34977002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
120, 232
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:5938413-5938160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
139, 88
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:8162727-8162988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:23140498-23140737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
158, 55
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:30178413-30178675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
91, 122
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:45409414-45409162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
99, 231
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:45706125-45705883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
177, 57
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:65601548-65601296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
177, 147
               

               
Conread position:
               
298-435
               

               
Cow position:
               
chr5:29371580-29371441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
299-477
               

               
Cow position:
               
chr5:40295936-40296117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
299-486
               

               
Cow position:
               
chr5:64168150-64168341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
299-515
               

               
Cow position:
               
chr5:76119638-76119420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
299-540
               

               
Cow position:
               
chr5:32153230-32153480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
175, 114
               

               
Conread position:
               
299-540
               

               
Cow position:
               
chr5:39094639-39094389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
164, 76
               

               
Conread position:
               
300-540
               

               
Cow position:
               
chr5:41951008-41951249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 71
               

               
Conread position:
               
300-540
               

               
Cow position:
               
chr5:67645050-67645300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
303-480
               

               
Cow position:
               
chr5:45170444-45170271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
172, 73
               

               
Conread position:
               
303-534
               

               
Cow position:
               
chr5:31144702-31144940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
94, 122
               

               
Conread position:
               
303-539
               

               
Cow position:
               
chr5:56820179-56820425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
305-540
               

               
Cow position:
               
chr5:34638967-34638721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
143, 171
               

               
Conread position:
               
306-390
               

               
Cow position:
               
chr5:24836699-24836784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
307-518
               

               
Cow position:
               
chr5:25447645-25447422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
308-497
               

               
Cow position:
               
chr5:28926100-28926297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
310-496
               

               
Cow position:
               
chr5:13691489-13691683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
310-497
               

               
Cow position:
               
chr5:50972604-50972417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
310-539
               

               
Cow position:
               
chr5:32140630-32140871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
312-477
               

               
Cow position:
               
chr5:54713656-54713824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
312-496
               

               
Cow position:
               
chr5:20554678-20554858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
161, 66
               

               
Conread position:
               
314-516
               

               
Cow position:
               
chr5:6670119-6670325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 163
               

               
Conread position:
               
315-456
               

               
Cow position:
               
chr5:28459633-28459773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
315-481
               

               
Cow position:
               
chr5:28456332-28456497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
315-497
               

               
Cow position:
               
chr5:12566668-12566841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 73
               

               
Conread position:
               
315-540
               

               
Cow position:
               
chr5:58144528-58144768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
140, 216
               

               
Conread position:
               
316-458
               

               
Cow position:
               
chr5:34107307-34107166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
316-540
               

               
Cow position:
               
chr5:34885091-34885320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
170, 66
               

               
Conread position:
               
317-490
               

               
Cow position:
               
chr5:72286844-72287018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
317-530
               

               
Cow position:
               
chr5:30487313-30487084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 218
               

               
Conread position:
               
318-540
               

               
Cow position:
               
chr5:2500109-2500353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 223
               

               
Conread position:
               
319-477
               

               
Cow position:
               
chr5:54154322-54154468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
319-540
               

               
Cow position:
               
chr5:21964358-21964127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
74, 203
               

               
Conread position:
               
322-497
               

               
Cow position:
               
chr5:29979916-29980096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 155
               

               
Conread position:
               
325-539
               

               
Cow position:
               
chr5:54404827-54405059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
327-540
               

               
Cow position:
               
chr5:42667326-42667553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 109
               

               
Conread position:
               
329-530
               

               
Cow position:
               
chr5:23866112-23866315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
125, 54
               

               
Conread position:
               
330-538
               

               
Cow position:
               
chr5:44583075-44583281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
331-540
               

               
Cow position:
               
chr5:35235652-35235873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
334-456
               

               
Cow position:
               
chr5:30293516-30293640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 75
               

               
Conread position:
               
335-497
               

               
Cow position:
               
chr5:1027641-1027805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
335-520
               

               
Cow position:
               
chr5:51800919-51801115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 64
               

               
Conread position:
               
335-526
               

               
Cow position:
               
chr5:3004776-3004585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
153, 61
               

               
Conread position:
               
335-540
               

               
Cow position:
               
chr5:1766296-1766508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
56, 122
               

               
Conread position:
               
335-540
               

               
Cow position:
               
chr5:12709942-12709721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 200
               

               
Conread position:
               
335-540
               

               
Cow position:
               
chr5:49361939-49362156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
336-539
               

               
Cow position:
               
chr5:24485382-24485589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 142
               

               
Conread position:
               
336-540
               

               
Cow position:
               
chr5:27015732-27015516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
118, 60
               

               
Conread position:
               
336-540
               

               
Cow position:
               
chr5:43474898-43474683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
338-516
               

               
Cow position:
               
chr5:42777815-42777631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
338-540
               

               
Cow position:
               
chr5:7140056-7140269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
56, 192
               

               
Conread position:
               
339-494
               

               
Cow position:
               
chr5:60448265-60448105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
339-536
               

               
Cow position:
               
chr5:34115702-34115502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
339-540
               

               
Cow position:
               
chr5:4797274-4797475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
340-540
               

               
Cow position:
               
chr5:26790407-26790616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
343-538
               

               
Cow position:
               
chr5:7921359-7921553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
344-483
               

               
Cow position:
               
chr5:29860395-29860249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
344-540
               

               
Cow position:
               
chr5:16185132-16184925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr5:20345204-20345071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
346-536
               

               
Cow position:
               
chr5:71579218-71579013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
346-540
               

               
Cow position:
               
chr5:30638821-30639017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 52
               

               
Conread position:
               
346-540
               

               
Cow position:
               
chr5:43395107-43395303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
346-540
               

               
Cow position:
               
chr5:51490722-51490919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
348-540
               

               
Cow position:
               
chr5:34916171-34915977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 50
               

               
Conread position:
               
349-540
               

               
Cow position:
               
chr5:8994526-8994730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
45, 124
               

               
Conread position:
               
350-540
               

               
Cow position:
               
chr5:17644616-17644820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 181
               

               
Conread position:
               
351-516
               

               
Cow position:
               
chr5:47721581-47721403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
352-486
               

               
Cow position:
               
chr5:29895234-29895097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
352-540
               

               
Cow position:
               
chr5:45037050-45036857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
355-540
               

               
Cow position:
               
chr5:6130387-6130188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 173
               

               
Conread position:
               
359-540
               

               
Cow position:
               
chr5:56134935-56135133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 177
               

               
Conread position:
               
363-497
               

               
Cow position:
               
chr5:50950579-50950441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
363-540
               

               
Cow position:
               
chr5:72150275-72150087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 116
               

               
Conread position:
               
398-539
               

               
Cow position:
               
chr5:57271275-57271428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 132
               
Show alignments to all cow chromosomes.