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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8010H17.5
        

               
Conread position:
               
24-406
               

               
Cow position:
               
chrX:38726165-38725795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
72, 49
               

               
Conread position:
               
190-379
               

               
Cow position:
               
chrX:41164813-41164624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
213-540
               

               
Cow position:
               
chrX:5900639-5900294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
218-482
               

               
Cow position:
               
chrX:14955599-14955861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
219-497
               

               
Cow position:
               
chrX:33493946-33493666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
221-369
               

               
Cow position:
               
chrX:20340471-20340623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
221-394
               

               
Cow position:
               
chrX:46069998-46070177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
221-516
               

               
Cow position:
               
chrX:20584499-20584193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 262
               

               
Conread position:
               
230-339
               

               
Cow position:
               
chrX:24547342-24547451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
230-371
               

               
Cow position:
               
chrX:34508703-34508562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
230-374
               

               
Cow position:
               
chrX:47342274-47342131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
230-517
               

               
Cow position:
               
chrX:30337794-30338074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
5, 88
               

               
Conread position:
               
230-539
               

               
Cow position:
               
chrX:32623729-32623420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 37
               

               
Conread position:
               
234-431
               

               
Cow position:
               
chrX:29553440-29553243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 184
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:12290873-12290572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 11
               

               
Conread position:
               
236-374
               

               
Cow position:
               
chrX:30824141-30824002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 13
               

               
Conread position:
               
236-492
               

               
Cow position:
               
chrX:37955999-37955726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
154, 9
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:41878782-41879098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 88
               

               
Conread position:
               
238-486
               

               
Cow position:
               
chrX:41674255-41674009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
239-477
               

               
Cow position:
               
chrX:44192294-44192535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
75, 210
               

               
Conread position:
               
239-495
               

               
Cow position:
               
chrX:17964372-17964629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
239-516
               

               
Cow position:
               
chrX:1175840-1176113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
216, 46
               

               
Conread position:
               
240-516
               

               
Cow position:
               
chrX:40480717-40480999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
241-392
               

               
Cow position:
               
chrX:29478870-29478721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
241-497
               

               
Cow position:
               
chrX:4278972-4279223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
247, 26
               

               
Conread position:
               
241-498
               

               
Cow position:
               
chrX:8917541-8917283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
208, 31
               

               
Conread position:
               
241-537
               

               
Cow position:
               
chrX:32431771-32431469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
242-432
               

               
Cow position:
               
chrX:16409746-16409563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
242-462
               

               
Cow position:
               
chrX:13122090-13121858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 229
               

               
Conread position:
               
242-478
               

               
Cow position:
               
chrX:45883824-45884065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
48, 198
               

               
Conread position:
               
242-540
               

               
Cow position:
               
chrX:27175145-27174832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
91, 167
               

               
Conread position:
               
244-363
               

               
Cow position:
               
chrX:21573716-21573599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
244-389
               

               
Cow position:
               
chrX:42282721-42282578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
244-391
               

               
Cow position:
               
chrX:31829316-31829463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
244-392
               

               
Cow position:
               
chrX:38722267-38722118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
244-393
               

               
Cow position:
               
chrX:11653915-11653760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
244-458
               

               
Cow position:
               
chrX:46429674-46429889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 195
               

               
Conread position:
               
244-476
               

               
Cow position:
               
chrX:45649027-45648782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 205
               

               
Conread position:
               
244-497
               

               
Cow position:
               
chrX:37780963-37781223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 235
               

               
Conread position:
               
244-516
               

               
Cow position:
               
chrX:48014580-48014301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
158, 188
               

               
Conread position:
               
244-540
               

               
Cow position:
               
chrX:46770818-46771133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
245-324
               

               
Cow position:
               
chrX:23182838-23182918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
81
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
245-327
               

               
Cow position:
               
chrX:6480452-6480534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
83
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-332
               

               
Cow position:
               
chrX:17525723-17525810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-332
               

               
Cow position:
               
chrX:23497548-23497634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
245-333
               

               
Cow position:
               
chrX:42086971-42086884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
245-337
               

               
Cow position:
               
chrX:32797260-32797353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
245-337
               

               
Cow position:
               
chrX:40543379-40543469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
245-339
               

               
Cow position:
               
chrX:25238507-25238413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-340
               

               
Cow position:
               
chrX:25282894-25282989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-342
               

               
Cow position:
               
chrX:31983441-31983538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-343
               

               
Cow position:
               
chrX:23187449-23187547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-343
               

               
Cow position:
               
chrX:42875356-42875258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-343
               

               
Cow position:
               
chrX:43014529-43014627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-346
               

               
Cow position:
               
chrX:6389224-6389124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
245-346
               

               
Cow position:
               
chrX:23471721-23471823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
245-351
               

               
Cow position:
               
chrX:16556074-16556179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
245-354
               

               
Cow position:
               
chrX:34991508-34991399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-355
               

               
Cow position:
               
chrX:1960281-1960391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-355
               

               
Cow position:
               
chrX:11454325-11454220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
245-356
               

               
Cow position:
               
chrX:17498466-17498355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-356
               

               
Cow position:
               
chrX:44754241-44754347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
245-357
               

               
Cow position:
               
chrX:2551236-2551123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
245-357
               

               
Cow position:
               
chrX:11582365-11582255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
245-357
               

               
Cow position:
               
chrX:33151844-33151952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
108, 36
               

               
Conread position:
               
245-358
               

               
Cow position:
               
chrX:27667569-27667456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-359
               

               
Cow position:
               
chrX:8327048-8326934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chrX:27415436-27415551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chrX:29562942-29563053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
245-360
               

               
Cow position:
               
chrX:46909959-46909844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-361
               

               
Cow position:
               
chrX:2314475-2314591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 27
               

               
Conread position:
               
245-361
               

               
Cow position:
               
chrX:40046434-40046547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-365
               

               
Cow position:
               
chrX:32867019-32866899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-365
               

               
Cow position:
               
chrX:37062440-37062561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
245-367
               

               
Cow position:
               
chrX:27296376-27296506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
245-369
               

               
Cow position:
               
chrX:28067994-28067870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-369
               

               
Cow position:
               
chrX:32747876-32747748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
245-372
               

               
Cow position:
               
chrX:20345594-20345470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
245-373
               

               
Cow position:
               
chrX:20583810-20583682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-374
               

               
Cow position:
               
chrX:29467634-29467763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-374
               

               
Cow position:
               
chrX:36313862-36313991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-375
               

               
Cow position:
               
chrX:24343427-24343558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
245-375
               

               
Cow position:
               
chrX:41810024-41810154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-380
               

               
Cow position:
               
chrX:31480113-31479981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
245-381
               

               
Cow position:
               
chrX:35285317-35285181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-382
               

               
Cow position:
               
chrX:10076115-10075980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
245-382
               

               
Cow position:
               
chrX:19717663-19717529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
245-383
               

               
Cow position:
               
chrX:1719259-1719121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-383
               

               
Cow position:
               
chrX:19018687-19018825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-383
               

               
Cow position:
               
chrX:38301953-38301815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-384
               

               
Cow position:
               
chrX:1122403-1122538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
245-384
               

               
Cow position:
               
chrX:19761898-19761759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-385
               

               
Cow position:
               
chrX:4559877-4559743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-386
               

               
Cow position:
               
chrX:17524240-17524381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
245-386
               

               
Cow position:
               
chrX:39180090-39180230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
245-388
               

               
Cow position:
               
chrX:4328040-4328182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
245-389
               

               
Cow position:
               
chrX:29501740-29501881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chrX:34420878-34420733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chrX:47079771-47079626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-391
               

               
Cow position:
               
chrX:36848435-36848580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
245-391
               

               
Cow position:
               
chrX:42479976-42479831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
245-392
               

               
Cow position:
               
chrX:32208679-32208825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
245-392
               

               
Cow position:
               
chrX:35276129-35275983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
245-392
               

               
Cow position:
               
chrX:39290501-39290356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
245-393
               

               
Cow position:
               
chrX:6222983-6223132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
245-393
               

               
Cow position:
               
chrX:12191904-12191757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
245-393
               

               
Cow position:
               
chrX:38587699-38587847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-394
               

               
Cow position:
               
chrX:30672246-30672401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
245-394
               

               
Cow position:
               
chrX:35658940-35658795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-396
               

               
Cow position:
               
chrX:42160767-42160620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-399
               

               
Cow position:
               
chrX:27668814-27668968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-402
               

               
Cow position:
               
chrX:43008753-43008595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 136
               

               
Conread position:
               
245-403
               

               
Cow position:
               
chrX:16836145-16836300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-403
               

               
Cow position:
               
chrX:16984784-16984630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
147, 35
               

               
Conread position:
               
245-404
               

               
Cow position:
               
chrX:25459585-25459749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
245-406
               

               
Cow position:
               
chrX:42449870-42450033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
245-408
               

               
Cow position:
               
chrX:24633839-24633664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
245-410
               

               
Cow position:
               
chrX:4615868-4616030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
245-410
               

               
Cow position:
               
chrX:25412049-25411886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
245-413
               

               
Cow position:
               
chrX:1087999-1088167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
153, 84
               

               
Conread position:
               
245-416
               

               
Cow position:
               
chrX:32318450-32318276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
245-420
               

               
Cow position:
               
chrX:23498536-23498709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
142, 82
               

               
Conread position:
               
245-420
               

               
Cow position:
               
chrX:30840690-30840508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
245-429
               

               
Cow position:
               
chrX:40531899-40532084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
245-432
               

               
Cow position:
               
chrX:23088996-23088821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-434
               

               
Cow position:
               
chrX:19943092-19943282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 66
               

               
Conread position:
               
245-434
               

               
Cow position:
               
chrX:22392841-22393031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
145, 22
               

               
Conread position:
               
245-434
               

               
Cow position:
               
chrX:37072533-37072349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
133, 154
               

               
Conread position:
               
245-436
               

               
Cow position:
               
chrX:6599638-6599831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
245-442
               

               
Cow position:
               
chrX:35985961-35985765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
147, 28
               

               
Conread position:
               
245-446
               

               
Cow position:
               
chrX:40108374-40108573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
245-447
               

               
Cow position:
               
chrX:22914898-22915094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
245-447
               

               
Cow position:
               
chrX:27511572-27511369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 151
               

               
Conread position:
               
245-451
               

               
Cow position:
               
chrX:20957382-20957186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
158, 129
               

               
Conread position:
               
245-451
               

               
Cow position:
               
chrX:22115174-22115378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
245-452
               

               
Cow position:
               
chrX:13147123-13146918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
245-452
               

               
Cow position:
               
chrX:25037131-25036924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-455
               

               
Cow position:
               
chrX:4515835-4515618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chrX:16575256-16575056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chrX:16762917-16762704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chrX:19097076-19097289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chrX:38208401-38208610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chrX:45598461-45598668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
139, 103
               

               
Conread position:
               
245-458
               

               
Cow position:
               
chrX:13924008-13923803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
245-464
               

               
Cow position:
               
chrX:2674814-2675032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 78
               

               
Conread position:
               
245-466
               

               
Cow position:
               
chrX:6463742-6463537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
143, 89
               

               
Conread position:
               
245-467
               

               
Cow position:
               
chrX:5135376-5135607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
245-468
               

               
Cow position:
               
chrX:41192848-41192625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
146, 195
               

               
Conread position:
               
245-473
               

               
Cow position:
               
chrX:40680758-40680523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
245-474
               

               
Cow position:
               
chrX:31489664-31489431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
155, 173
               

               
Conread position:
               
245-476
               

               
Cow position:
               
chrX:29050392-29050156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
245-478
               

               
Cow position:
               
chrX:4152887-4153123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 214
               

               
Conread position:
               
245-482
               

               
Cow position:
               
chrX:35885583-35885826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
151, 170
               

               
Conread position:
               
245-482
               

               
Cow position:
               
chrX:37129413-37129172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
245-483
               

               
Cow position:
               
chrX:20168701-20168460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 25
               

               
Conread position:
               
245-483
               

               
Cow position:
               
chrX:20887496-20887737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
245-485
               

               
Cow position:
               
chrX:10516397-10516157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 202
               

               
Conread position:
               
245-485
               

               
Cow position:
               
chrX:43779708-43779946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 37
               

               
Conread position:
               
245-486
               

               
Cow position:
               
chrX:21328057-21327803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
245-486
               

               
Cow position:
               
chrX:31729586-31729343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
215, 0
               

               
Conread position:
               
245-486
               

               
Cow position:
               
chrX:40685184-40685431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 231
               

               
Conread position:
               
245-495
               

               
Cow position:
               
chrX:34504906-34505157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
245-495
               

               
Cow position:
               
chrX:45110800-45110549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
93, 154
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chrX:8869257-8869513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 234
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chrX:11614837-11614588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 70
               

               
Conread position:
               
245-496
               

               
Cow position:
               
chrX:23563647-23563904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
210, 159
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:4399263-4399017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:5118355-5118614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:5679428-5679678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 84
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:5872461-5872205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 152
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:8731237-8730974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
143, 83
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:9201692-9201438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 131
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:10831344-10831605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 48
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:13647641-13647897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
160, 129
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:15007006-15007262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 20
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:20339750-20340000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 51
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:26881420-26881680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 164
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:27228271-27228011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 144
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:27945910-27946171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:34411990-34411732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 235
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:35543031-35542783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
208, 92
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:38094377-38094635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:41526385-41526633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
156, 52
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:41884268-41884526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
149, 233
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:42873529-42873280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
245-497
               

               
Cow position:
               
chrX:45977070-45976808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
245-498
               

               
Cow position:
               
chrX:23562776-23562522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 144
               

               
Conread position:
               
245-498
               

               
Cow position:
               
chrX:26493492-26493750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
134, 46
               

               
Conread position:
               
245-498
               

               
Cow position:
               
chrX:30133177-30133435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
245-506
               

               
Cow position:
               
chrX:42235381-42235649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
245-511
               

               
Cow position:
               
chrX:9650880-9651150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 231
               

               
Conread position:
               
245-511
               

               
Cow position:
               
chrX:31252551-31252289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 53
               

               
Conread position:
               
245-511
               

               
Cow position:
               
chrX:34314168-34313898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
149, 115
               

               
Conread position:
               
245-511
               

               
Cow position:
               
chrX:34792169-34792436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
208, 16
               

               
Conread position:
               
245-516
               

               
Cow position:
               
chrX:13382469-13382195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
245-518
               

               
Cow position:
               
chrX:17949349-17949623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
245-518
               

               
Cow position:
               
chrX:43115294-43115019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
147, 90
               

               
Conread position:
               
245-520
               

               
Cow position:
               
chrX:6265455-6265734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
148, 80
               

               
Conread position:
               
245-521
               

               
Cow position:
               
chrX:7695892-7695610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
245-523
               

               
Cow position:
               
chrX:870039-870312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
229, 27
               

               
Conread position:
               
245-523
               

               
Cow position:
               
chrX:32170745-32171030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 82
               

               
Conread position:
               
245-526
               

               
Cow position:
               
chrX:21986148-21986436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 10
               

               
Conread position:
               
245-526
               

               
Cow position:
               
chrX:38728878-38728594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 127
               

               
Conread position:
               
245-527
               

               
Cow position:
               
chrX:22813206-22812919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
143, 112
               

               
Conread position:
               
245-535
               

               
Cow position:
               
chrX:36356249-36355957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
210, 48
               

               
Conread position:
               
245-536
               

               
Cow position:
               
chrX:15546025-15545741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
245-537
               

               
Cow position:
               
chrX:20801914-20801621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
11, 145
               

               
Conread position:
               
245-538
               

               
Cow position:
               
chrX:17888279-17888568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 87
               

               
Conread position:
               
245-538
               

               
Cow position:
               
chrX:29601684-29601994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 233
               

               
Conread position:
               
245-538
               

               
Cow position:
               
chrX:30962732-30963033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 136
               

               
Conread position:
               
245-539
               

               
Cow position:
               
chrX:34543928-34543624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
152, 195
               

               
Conread position:
               
245-539
               

               
Cow position:
               
chrX:46587966-46587655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 288
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:152044-151738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
155, 32
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:161555-161258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:169402-169689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:878236-878536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 201
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:4043723-4044014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 82
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:4768876-4768587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
173, 83
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:6278354-6278669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 296
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:6414185-6413881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
212, 68
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:7351441-7351132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
208, 75
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:7572050-7571743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 234
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:7718976-7718691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
210, 22
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:8797393-8797084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 88
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:9416540-9416856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
138, 116
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:9635048-9635344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 9
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:11656225-11655925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 145
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:11717639-11717946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 231
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:12309242-12309552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
210, 173
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:12979690-12979994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 181
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:14883811-14884125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
50, 234
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:17726120-17725811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 231
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:17795127-17794822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
9, 198
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:23092017-23091718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 176
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:24424257-24424551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
212, 128
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:25815758-25816059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
139, 27
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:27145748-27145460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
243, 153
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:27393882-27394177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 151
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:27446830-27446525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
218, 144
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:27705730-27705426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 125
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:28878030-28878322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 140
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:31312173-31311862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 193
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:31436618-31436319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 158
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:32330314-32329994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:33855076-33855396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
129, 53
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:34238866-34238557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 209
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:34377086-34376792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
208, 131
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:34402150-34401834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 137
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:34441310-34441615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 113
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:35269005-35268724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:36976095-36975786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 114
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:38006627-38006931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
208, 16
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:38218860-38218544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 191
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:38549591-38549285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 155
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:38642392-38642094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
179, 9
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:38853344-38853033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:38964252-38963943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 235
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:40035296-40035608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 109
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:40269638-40269321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 237
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:42247038-42247347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:42380968-42381263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 136
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:42492380-42492678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 26
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:43527652-43527340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 135
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:43730080-43730378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 107
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:44397154-44396858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:44656813-44657128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
144, 117
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:44961895-44961584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 290
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:45502290-45501985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
107, 203
               

               
Conread position:
               
246-326
               

               
Cow position:
               
chrX:16481427-16481507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
81
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-359
               

               
Cow position:
               
chrX:41453445-41453332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-363
               

               
Cow position:
               
chrX:23358971-23359085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
246-370
               

               
Cow position:
               
chrX:32877232-32877356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-374
               

               
Cow position:
               
chrX:753299-753167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
246-377
               

               
Cow position:
               
chrX:43012014-43012136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
246-382
               

               
Cow position:
               
chrX:42481587-42481724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
246-387
               

               
Cow position:
               
chrX:24170587-24170727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
246-388
               

               
Cow position:
               
chrX:1337149-1337278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
246-392
               

               
Cow position:
               
chrX:11859395-11859540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
246-394
               

               
Cow position:
               
chrX:11762859-11763006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
246-406
               

               
Cow position:
               
chrX:42432366-42432529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 67
               

               
Conread position:
               
246-408
               

               
Cow position:
               
chrX:42506090-42506245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
246-423
               

               
Cow position:
               
chrX:43116868-43116690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
246-423
               

               
Cow position:
               
chrX:48474050-48473873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
246-425
               

               
Cow position:
               
chrX:23188641-23188813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
246-427
               

               
Cow position:
               
chrX:42894069-42893879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
246-429
               

               
Cow position:
               
chrX:24749228-24749047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 81
               

               
Conread position:
               
246-442
               

               
Cow position:
               
chrX:44339182-44339377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 86
               

               
Conread position:
               
246-446
               

               
Cow position:
               
chrX:31626835-31627038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 78
               

               
Conread position:
               
246-473
               

               
Cow position:
               
chrX:9252020-9252250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 130
               

               
Conread position:
               
246-478
               

               
Cow position:
               
chrX:42855601-42855362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 187
               

               
Conread position:
               
246-480
               

               
Cow position:
               
chrX:27261335-27261093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
246-486
               

               
Cow position:
               
chrX:24365680-24365927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
151, 50
               

               
Conread position:
               
246-486
               

               
Cow position:
               
chrX:45174994-45174749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
8, 231
               

               
Conread position:
               
246-496
               

               
Cow position:
               
chrX:15815229-15814976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
46, 160
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chrX:7710396-7710655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 151
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chrX:14275600-14275846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
143, 205
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chrX:41027302-41027045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 233
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chrX:46700706-46700936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chrX:48236960-48236705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
246-498
               

               
Cow position:
               
chrX:44054945-44054689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
208, 139
               

               
Conread position:
               
246-525
               

               
Cow position:
               
chrX:28865863-28866140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
246-527
               

               
Cow position:
               
chrX:38066311-38066595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 172
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:6407686-6407385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 69
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:22387107-22387411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 87
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:22822189-22821884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
209, 157
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:28013301-28013603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:31442686-31442985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 188
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:32821171-32820865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 97
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:33640118-33639808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 285
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:40557536-40557839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 232
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:41238212-41238529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 82
               

               
Conread position:
               
247-344
               

               
Cow position:
               
chrX:30831191-30831288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-354
               

               
Cow position:
               
chrX:27270518-27270410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
247-357
               

               
Cow position:
               
chrX:4092066-4091956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-360
               

               
Cow position:
               
chrX:40649037-40648923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
78, 106
               

               
Conread position:
               
247-371
               

               
Cow position:
               
chrX:28098467-28098344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
247-392
               

               
Cow position:
               
chrX:18046538-18046398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
247-394
               

               
Cow position:
               
chrX:32574459-32574312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-395
               

               
Cow position:
               
chrX:23335834-23335978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
247-407
               

               
Cow position:
               
chrX:34278301-34278461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-416
               

               
Cow position:
               
chrX:20743746-20743575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
247-421
               

               
Cow position:
               
chrX:41941765-41941594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
247-423
               

               
Cow position:
               
chrX:44660447-44660622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
247-424
               

               
Cow position:
               
chrX:43150572-43150385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
247-425
               

               
Cow position:
               
chrX:28940387-28940210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
247-427
               

               
Cow position:
               
chrX:48558888-48558709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
247-434
               

               
Cow position:
               
chrX:11593853-11594048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-434
               

               
Cow position:
               
chrX:36367793-36367987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
247-451
               

               
Cow position:
               
chrX:4109326-4109128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
247-451
               

               
Cow position:
               
chrX:44702924-44703134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 140
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chrX:3130713-3130508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chrX:34554865-34554659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
247-472
               

               
Cow position:
               
chrX:6559315-6559532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
200, 46
               

               
Conread position:
               
247-476
               

               
Cow position:
               
chrX:33654702-33654932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
195, 137
               

               
Conread position:
               
247-482
               

               
Cow position:
               
chrX:12095630-12095870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 162
               

               
Conread position:
               
247-486
               

               
Cow position:
               
chrX:23583703-23583462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-487
               

               
Cow position:
               
chrX:4746104-4746341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-488
               

               
Cow position:
               
chrX:17966483-17966244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
201, 150
               

               
Conread position:
               
247-496
               

               
Cow position:
               
chrX:29544735-29544989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chrX:14599674-14599421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chrX:20677508-20677260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
211, 149
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chrX:24331918-24331666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chrX:29289720-29289468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chrX:41871209-41870961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 195
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chrX:42927682-42927931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
202, 138
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chrX:46433633-46433374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 142
               

               
Conread position:
               
247-516
               

               
Cow position:
               
chrX:3654750-3654478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
247-516
               

               
Cow position:
               
chrX:36283481-36283215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
247-517
               

               
Cow position:
               
chrX:31373678-31373427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
251, 130
               

               
Conread position:
               
247-527
               

               
Cow position:
               
chrX:21593429-21593142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
247-534
               

               
Cow position:
               
chrX:7179036-7178747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
247-539
               

               
Cow position:
               
chrX:22074942-22074638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 203
               

               
Conread position:
               
247-539
               

               
Cow position:
               
chrX:31250530-31250227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
247-539
               

               
Cow position:
               
chrX:45875533-45875239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
208, 24
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:3580086-3579781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:4632713-4633014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
30, 141
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:17231878-17231571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:23513879-23514178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 27
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:27771826-27772124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
208, 66
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:33001048-33000740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 232
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:37836720-37836424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
208, 70
               

               
Conread position:
               
248-367
               

               
Cow position:
               
chrX:40355172-40355057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
248-386
               

               
Cow position:
               
chrX:31744863-31745002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
248-430
               

               
Cow position:
               
chrX:10305210-10305390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 87
               

               
Conread position:
               
248-434
               

               
Cow position:
               
chrX:4645772-4645957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
248-447
               

               
Cow position:
               
chrX:1360230-1360028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 161
               

               
Conread position:
               
248-474
               

               
Cow position:
               
chrX:33204828-33205053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
207, 154
               

               
Conread position:
               
248-476
               

               
Cow position:
               
chrX:5134613-5134391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
248-476
               

               
Cow position:
               
chrX:45968289-45968069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
248-486
               

               
Cow position:
               
chrX:18204322-18204563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
80, 142
               

               
Conread position:
               
248-496
               

               
Cow position:
               
chrX:38226969-38227206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
205, 37
               

               
Conread position:
               
248-500
               

               
Cow position:
               
chrX:23113426-23113159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 201
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chrX:2301065-2300770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chrX:37489859-37489567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 29
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chrX:41068866-41068564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 247
               

               
Conread position:
               
249-339
               

               
Cow position:
               
chrX:12888-12800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
249-348
               

               
Cow position:
               
chrX:40116620-40116523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
249-351
               

               
Cow position:
               
chrX:40451945-40452046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
249-355
               

               
Cow position:
               
chrX:35681707-35681602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
249-357
               

               
Cow position:
               
chrX:48822202-48822310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-359
               

               
Cow position:
               
chrX:4942118-4942228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-360
               

               
Cow position:
               
chrX:23574793-23574684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
249-369
               

               
Cow position:
               
chrX:25389365-25389249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
249-370
               

               
Cow position:
               
chrX:5026396-5026275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-386
               

               
Cow position:
               
chrX:38968028-38967891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
110, 64
               

               
Conread position:
               
249-388
               

               
Cow position:
               
chrX:2936097-2935958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-391
               

               
Cow position:
               
chrX:32910239-32910102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
249-391
               

               
Cow position:
               
chrX:40337050-40336909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
249-392
               

               
Cow position:
               
chrX:4467107-4466964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-392
               

               
Cow position:
               
chrX:26205308-26205451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
249-392
               

               
Cow position:
               
chrX:28923169-28923039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
249-396
               

               
Cow position:
               
chrX:45694439-45694296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
249-401
               

               
Cow position:
               
chrX:29733452-29733603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
249-402
               

               
Cow position:
               
chrX:3806822-3806670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
249-404
               

               
Cow position:
               
chrX:12972824-12972666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
249-423
               

               
Cow position:
               
chrX:4289584-4289405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
249-423
               

               
Cow position:
               
chrX:27413651-27413476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
133, 118
               

               
Conread position:
               
249-428
               

               
Cow position:
               
chrX:35759796-35759978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
249-432
               

               
Cow position:
               
chrX:11325958-11326143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
132, 35
               

               
Conread position:
               
249-433
               

               
Cow position:
               
chrX:48121057-48121243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
249-439
               

               
Cow position:
               
chrX:29115844-29115661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
249-441
               

               
Cow position:
               
chrX:29407882-29408077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
249-441
               

               
Cow position:
               
chrX:43426435-43426240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
249-442
               

               
Cow position:
               
chrX:25328475-25328659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 108
               

               
Conread position:
               
249-444
               

               
Cow position:
               
chrX:27306594-27306397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
249-445
               

               
Cow position:
               
chrX:32977946-32978133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
249-447
               

               
Cow position:
               
chrX:39352925-39352722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chrX:22326259-22326057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
249-452
               

               
Cow position:
               
chrX:126907-126706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
142, 93
               

               
Conread position:
               
249-455
               

               
Cow position:
               
chrX:15820734-15820531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
249-456
               

               
Cow position:
               
chrX:36866312-36866104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
249-468
               

               
Cow position:
               
chrX:2003736-2003955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
89, 150
               

               
Conread position:
               
249-471
               

               
Cow position:
               
chrX:11317829-11318053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
200, 23
               

               
Conread position:
               
249-474
               

               
Cow position:
               
chrX:25788764-25788981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
249-474
               

               
Cow position:
               
chrX:41270845-41271082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
7, 232
               

               
Conread position:
               
249-474
               

               
Cow position:
               
chrX:45670362-45670136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
68, 160
               

               
Conread position:
               
249-476
               

               
Cow position:
               
chrX:1466302-1466070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
249-477
               

               
Cow position:
               
chrX:6041069-6041301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
249-477
               

               
Cow position:
               
chrX:25035242-25035471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
203, 148
               

               
Conread position:
               
249-481
               

               
Cow position:
               
chrX:38560699-38560462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
137, 165
               

               
Conread position:
               
249-481
               

               
Cow position:
               
chrX:46532355-46532596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
138, 231
               

               
Conread position:
               
249-484
               

               
Cow position:
               
chrX:34836924-34837152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
203, 127
               

               
Conread position:
               
249-486
               

               
Cow position:
               
chrX:20697469-20697706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
177, 155
               

               
Conread position:
               
249-492
               

               
Cow position:
               
chrX:10959255-10959504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 151
               

               
Conread position:
               
249-495
               

               
Cow position:
               
chrX:1615908-1616154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
249-495
               

               
Cow position:
               
chrX:39126466-39126223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
214, 140
               

               
Conread position:
               
249-495
               

               
Cow position:
               
chrX:39415230-39415477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
193, 134
               

               
Conread position:
               
249-496
               

               
Cow position:
               
chrX:29194370-29194123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:1503467-1503226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
148, 91
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:4403457-4403202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 153
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:5919637-5919384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
8, 202
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:6563659-6563408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:6656523-6656274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:9365536-9365787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 163
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:11084925-11085169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 8
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:13853761-13853510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:17042822-17042580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
206, 54
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:17630661-17630915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 229
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:17662458-17662705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 78
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:21664581-21664835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:21672700-21672443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:31294432-31294669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 140
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:32310246-32309997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
46, 177
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:37986365-37986121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
144, 65
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:43050209-43049949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chrX:48385229-48385472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
211, 48
               

               
Conread position:
               
249-498
               

               
Cow position:
               
chrX:25713936-25713684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
249-498
               

               
Cow position:
               
chrX:40567761-40567490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
84, 206
               

               
Conread position:
               
249-507
               

               
Cow position:
               
chrX:34222854-34222588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 47
               

               
Conread position:
               
249-507
               

               
Cow position:
               
chrX:35288795-35288533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
249-511
               

               
Cow position:
               
chrX:16416639-16416381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 28
               

               
Conread position:
               
249-513
               

               
Cow position:
               
chrX:34315661-34315393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 184
               

               
Conread position:
               
249-516
               

               
Cow position:
               
chrX:10252060-10252310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 79
               

               
Conread position:
               
249-516
               

               
Cow position:
               
chrX:42011421-42011149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 124
               

               
Conread position:
               
249-518
               

               
Cow position:
               
chrX:5679791-5680066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
138, 79
               

               
Conread position:
               
249-521
               

               
Cow position:
               
chrX:6260009-6260294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 95
               

               
Conread position:
               
249-527
               

               
Cow position:
               
chrX:15231522-15231799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
200, 9
               

               
Conread position:
               
249-528
               

               
Cow position:
               
chrX:32743673-32743387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
249-536
               

               
Cow position:
               
chrX:17542099-17541813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
249-538
               

               
Cow position:
               
chrX:39558210-39558508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 7
               

               
Conread position:
               
249-539
               

               
Cow position:
               
chrX:45113761-45113466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 153
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:4865370-4865088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:5017282-5017571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 39
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:7646396-7646097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 141
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:9425613-9425905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
145, 64
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:10865732-10866031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:12437132-12437403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
239, 55
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:13177336-13177628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
103, 136
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:14973606-14973896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 94
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:24259442-24259745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:27508886-27509183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:33466764-33466450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
78, 171
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:34503060-34502755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 136
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:34565423-34565129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 18
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:35382897-35383183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
198, 61
               

               
Conread position:
               
249-540
               

               
Cow position:
               
chrX:41733059-41733351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
250-331
               

               
Cow position:
               
chrX:26692350-26692269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
82
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-357
               

               
Cow position:
               
chrX:4612744-4612850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
250-360
               

               
Cow position:
               
chrX:11181057-11181167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-360
               

               
Cow position:
               
chrX:17908011-17908121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-374
               

               
Cow position:
               
chrX:908091-907961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
250-374
               

               
Cow position:
               
chrX:23266554-23266430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-378
               

               
Cow position:
               
chrX:47349658-47349527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
250-393
               

               
Cow position:
               
chrX:24054816-24054667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
250-409
               

               
Cow position:
               
chrX:42836320-42836164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
250-424
               

               
Cow position:
               
chrX:27074912-27075085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
170, 139
               

               
Conread position:
               
250-438
               

               
Cow position:
               
chrX:20678003-20678202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
143, 92
               

               
Conread position:
               
250-455
               

               
Cow position:
               
chrX:36514753-36514960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
250-483
               

               
Cow position:
               
chrX:29549412-29549645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
150, 27
               

               
Conread position:
               
250-490
               

               
Cow position:
               
chrX:37119731-37119492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
250-497
               

               
Cow position:
               
chrX:38654302-38654542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
140, 60
               

               
Conread position:
               
250-500
               

               
Cow position:
               
chrX:46072678-46072935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 229
               

               
Conread position:
               
250-521
               

               
Cow position:
               
chrX:19879179-19878910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
250-526
               

               
Cow position:
               
chrX:29680122-29680409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 147
               

               
Conread position:
               
250-538
               

               
Cow position:
               
chrX:41123198-41122913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 101
               

               
Conread position:
               
250-539
               

               
Cow position:
               
chrX:4825697-4825990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chrX:11073052-11073352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 175
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chrX:11633821-11633515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 151
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chrX:15147058-15147351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 82
               

               
Conread position:
               
251-343
               

               
Cow position:
               
chrX:28876648-28876556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-357
               

               
Cow position:
               
chrX:23860856-23860962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-359
               

               
Cow position:
               
chrX:36722667-36722775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-370
               

               
Cow position:
               
chrX:18637630-18637508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
251-381
               

               
Cow position:
               
chrX:16323880-16324006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
251-382
               

               
Cow position:
               
chrX:3860498-3860621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
251-384
               

               
Cow position:
               
chrX:46068621-46068754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
251-404
               

               
Cow position:
               
chrX:22628189-22628342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
146, 72
               

               
Conread position:
               
251-415
               

               
Cow position:
               
chrX:42331422-42331251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
251-429
               

               
Cow position:
               
chrX:18964691-18964865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
144, 81
               

               
Conread position:
               
251-429
               

               
Cow position:
               
chrX:47061534-47061354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
251-431
               

               
Cow position:
               
chrX:21665103-21665282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
251-446
               

               
Cow position:
               
chrX:19469370-19469563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
251-477
               

               
Cow position:
               
chrX:13868841-13868611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
251-486
               

               
Cow position:
               
chrX:16348434-16348670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
251-498
               

               
Cow position:
               
chrX:32420350-32420106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
204, 101
               

               
Conread position:
               
251-502
               

               
Cow position:
               
chrX:48044378-48044629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 23
               

               
Conread position:
               
251-530
               

               
Cow position:
               
chrX:16532334-16532053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
102, 94
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chrX:6690122-6690411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 137
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chrX:23785785-23785490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chrX:29121185-29120893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 226
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chrX:30543146-30543454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
251-540
               

               
Cow position:
               
chrX:47054387-47054694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
135, 82
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chrX:46793609-46793780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-424
               

               
Cow position:
               
chrX:17956827-17956660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
252-456
               

               
Cow position:
               
chrX:39220216-39220013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
252-456
               

               
Cow position:
               
chrX:45099265-45099058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
252-540
               

               
Cow position:
               
chrX:7336978-7336665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 175
               

               
Conread position:
               
252-540
               

               
Cow position:
               
chrX:10411847-10412152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 225
               

               
Conread position:
               
252-540
               

               
Cow position:
               
chrX:37910581-37910289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
253-497
               

               
Cow position:
               
chrX:618873-619116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
140, 43
               

               
Conread position:
               
253-539
               

               
Cow position:
               
chrX:11082486-11082776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 181
               

               
Conread position:
               
253-540
               

               
Cow position:
               
chrX:917232-917535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 109
               

               
Conread position:
               
254-395
               

               
Cow position:
               
chrX:48278396-48278258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
254-396
               

               
Cow position:
               
chrX:35278465-35278322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
254-437
               

               
Cow position:
               
chrX:7806559-7806375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
254-497
               

               
Cow position:
               
chrX:616124-616374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 225
               

               
Conread position:
               
254-540
               

               
Cow position:
               
chrX:42171162-42171463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 7
               

               
Conread position:
               
255-358
               

               
Cow position:
               
chrX:29688042-29688144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
255-374
               

               
Cow position:
               
chrX:41862497-41862379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
255-392
               

               
Cow position:
               
chrX:4996721-4996582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
255-433
               

               
Cow position:
               
chrX:2523548-2523722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
255-453
               

               
Cow position:
               
chrX:18272925-18273122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
138, 10
               

               
Conread position:
               
255-462
               

               
Cow position:
               
chrX:20881810-20882010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
255-497
               

               
Cow position:
               
chrX:37232541-37232301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
194, 121
               

               
Conread position:
               
255-497
               

               
Cow position:
               
chrX:47481930-47481688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
200, 77
               

               
Conread position:
               
255-539
               

               
Cow position:
               
chrX:8925833-8925543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
255-539
               

               
Cow position:
               
chrX:35224431-35224136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
5, 222
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:5638024-5638329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:6488704-6488423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
179, 11
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:6544388-6544093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:7162190-7161907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 72
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:18694796-18695083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 71
               

               
Conread position:
               
256-381
               

               
Cow position:
               
chrX:47102499-47102620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chrX:11938801-11939061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
256-518
               

               
Cow position:
               
chrX:29230132-29229878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
201, 129
               

               
Conread position:
               
256-540
               

               
Cow position:
               
chrX:36068148-36067856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
129, 145
               

               
Conread position:
               
257-385
               

               
Cow position:
               
chrX:32942944-32943072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
257-391
               

               
Cow position:
               
chrX:6850342-6850208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
99, 111
               

               
Conread position:
               
257-398
               

               
Cow position:
               
chrX:16830352-16830215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
257-401
               

               
Cow position:
               
chrX:45382914-45383058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 68
               

               
Conread position:
               
257-404
               

               
Cow position:
               
chrX:4037042-4037188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
257-455
               

               
Cow position:
               
chrX:12082192-12082391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
136, 68
               

               
Conread position:
               
257-475
               

               
Cow position:
               
chrX:31515306-31515079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 177
               

               
Conread position:
               
257-497
               

               
Cow position:
               
chrX:33539302-33539053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
176, 117
               

               
Conread position:
               
257-512
               

               
Cow position:
               
chrX:23561990-23561740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
257-528
               

               
Cow position:
               
chrX:36009781-36010049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chrX:1499798-1499506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 180
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chrX:7278043-7277756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 140
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chrX:9041112-9041393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
135, 174
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chrX:20151988-20151687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 75
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chrX:27431786-27432082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 139
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chrX:45414172-45414463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
203, 123
               

               
Conread position:
               
258-367
               

               
Cow position:
               
chrX:4617267-4617376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
258-430
               

               
Cow position:
               
chrX:19394684-19394511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
258-477
               

               
Cow position:
               
chrX:47046383-47046598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
200, 63
               

               
Conread position:
               
258-482
               

               
Cow position:
               
chrX:40283252-40283029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
197, 76
               

               
Conread position:
               
258-486
               

               
Cow position:
               
chrX:26493136-26492906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
113, 13
               

               
Conread position:
               
258-516
               

               
Cow position:
               
chrX:43568050-43567790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 130
               

               
Conread position:
               
258-520
               

               
Cow position:
               
chrX:11851548-11851802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
258-540
               

               
Cow position:
               
chrX:1514288-1514564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 70
               

               
Conread position:
               
258-540
               

               
Cow position:
               
chrX:35413741-35413469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 74
               

               
Conread position:
               
258-540
               

               
Cow position:
               
chrX:37574971-37574693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
230, 118
               

               
Conread position:
               
258-540
               

               
Cow position:
               
chrX:42469810-42470100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
259-455
               

               
Cow position:
               
chrX:38321252-38321453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chrX:4268934-4269229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
78, 130
               

               
Conread position:
               
259-540
               

               
Cow position:
               
chrX:19690345-19690054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
174, 111
               

               
Conread position:
               
260-427
               

               
Cow position:
               
chrX:29585248-29585082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
260-439
               

               
Cow position:
               
chrX:42498920-42499099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
261-383
               

               
Cow position:
               
chrX:37665819-37665697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
261-483
               

               
Cow position:
               
chrX:11454921-11455145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
136, 42
               

               
Conread position:
               
261-497
               

               
Cow position:
               
chrX:24287805-24288036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
193, 89
               

               
Conread position:
               
261-498
               

               
Cow position:
               
chrX:19273579-19273835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
133, 230
               

               
Conread position:
               
261-538
               

               
Cow position:
               
chrX:28134466-28134184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 42
               

               
Conread position:
               
261-539
               

               
Cow position:
               
chrX:34532648-34532366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 163
               

               
Conread position:
               
261-540
               

               
Cow position:
               
chrX:7722116-7721821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 71
               

               
Conread position:
               
261-540
               

               
Cow position:
               
chrX:47186199-47186484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
195, 16
               

               
Conread position:
               
262-423
               

               
Cow position:
               
chrX:44796509-44796348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
262-507
               

               
Cow position:
               
chrX:19162214-19162462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
193, 113
               

               
Conread position:
               
262-540
               

               
Cow position:
               
chrX:27516646-27516369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
141, 34
               

               
Conread position:
               
263-387
               

               
Cow position:
               
chrX:48683294-48683418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
263-497
               

               
Cow position:
               
chrX:9161701-9161473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 18
               

               
Conread position:
               
263-539
               

               
Cow position:
               
chrX:21064409-21064122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 267
               

               
Conread position:
               
264-482
               

               
Cow position:
               
chrX:47246632-47246843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
199, 61
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chrX:7345208-7344978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
264-510
               

               
Cow position:
               
chrX:22453973-22454220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
133, 64
               

               
Conread position:
               
265-441
               

               
Cow position:
               
chrX:15233142-15233319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
126, 87
               

               
Conread position:
               
265-496
               

               
Cow position:
               
chrX:40692627-40692862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
265-507
               

               
Cow position:
               
chrX:12007255-12007500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
173, 132
               

               
Conread position:
               
268-497
               

               
Cow position:
               
chrX:25338307-25338071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
269-370
               

               
Cow position:
               
chrX:25211048-25210948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
269-441
               

               
Cow position:
               
chrX:6541613-6541788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
269-511
               

               
Cow position:
               
chrX:31260494-31260755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 217
               

               
Conread position:
               
269-540
               

               
Cow position:
               
chrX:11856550-11856265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 169
               

               
Conread position:
               
269-540
               

               
Cow position:
               
chrX:21004803-21004518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
125, 5
               

               
Conread position:
               
269-540
               

               
Cow position:
               
chrX:43049451-43049181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
270-388
               

               
Cow position:
               
chrX:6213989-6213871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
270-486
               

               
Cow position:
               
chrX:47967726-47967498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
270-497
               

               
Cow position:
               
chrX:21566526-21566290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
272-417
               

               
Cow position:
               
chrX:48532287-48532142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chrX:44063507-44063657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chrX:44238792-44238944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chrX:46788167-46788318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chrX:47750175-47750326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chrX:48111424-48111273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chrX:48397855-48398006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chrX:48652460-48652611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-455
               

               
Cow position:
               
chrX:44954465-44954280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
272-456
               

               
Cow position:
               
chrX:46793773-46793952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
116, 138
               

               
Conread position:
               
272-473
               

               
Cow position:
               
chrX:48652604-48652808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
182, 157
               

               
Conread position:
               
272-477
               

               
Cow position:
               
chrX:48194918-48195129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
272-486
               

               
Cow position:
               
chrX:41262817-41263013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
202, 24
               

               
Conread position:
               
272-486
               

               
Cow position:
               
chrX:47238210-47237994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
203, 0
               

               
Conread position:
               
272-492
               

               
Cow position:
               
chrX:45005741-45005523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
116, 150
               

               
Conread position:
               
272-496
               

               
Cow position:
               
chrX:45403708-45403941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 99
               

               
Conread position:
               
272-496
               

               
Cow position:
               
chrX:46722617-46722848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 136
               

               
Conread position:
               
272-496
               

               
Cow position:
               
chrX:47300786-47301013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
272-496
               

               
Cow position:
               
chrX:47302760-47302987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
203, 0
               

               
Conread position:
               
272-497
               

               
Cow position:
               
chrX:45064819-45065044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
156, 171
               

               
Conread position:
               
272-500
               

               
Cow position:
               
chrX:26625554-26625785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 177
               

               
Conread position:
               
272-530
               

               
Cow position:
               
chrX:44837093-44836841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
131, 85
               

               
Conread position:
               
274-539
               

               
Cow position:
               
chrX:47362508-47362774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
274-540
               

               
Cow position:
               
chrX:41560151-41560402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
214, 31
               

               
Conread position:
               
275-529
               

               
Cow position:
               
chrX:12249929-12249651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
275-535
               

               
Cow position:
               
chrX:29032524-29032256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
275-540
               

               
Cow position:
               
chrX:38936814-38936537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
62, 71
               

               
Conread position:
               
276-450
               

               
Cow position:
               
chrX:7648297-7648462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
276-497
               

               
Cow position:
               
chrX:3154130-3154356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
276-497
               

               
Cow position:
               
chrX:7509252-7509030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
114, 38
               

               
Conread position:
               
276-531
               

               
Cow position:
               
chrX:48570875-48571147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
278-455
               

               
Cow position:
               
chrX:41111827-41111655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
278-490
               

               
Cow position:
               
chrX:40789317-40789105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
278-540
               

               
Cow position:
               
chrX:7497353-7497080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
279-533
               

               
Cow position:
               
chrX:11844131-11844403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 258
               

               
Conread position:
               
280-386
               

               
Cow position:
               
chrX:25049173-25049279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
280-419
               

               
Cow position:
               
chrX:1397733-1397596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 87
               

               
Conread position:
               
280-423
               

               
Cow position:
               
chrX:44590953-44591096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
280-458
               

               
Cow position:
               
chrX:19965287-19965471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
280-474
               

               
Cow position:
               
chrX:48071270-48071072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
280-486
               

               
Cow position:
               
chrX:34454766-34454564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
174, 95
               

               
Conread position:
               
280-486
               

               
Cow position:
               
chrX:48010713-48010498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
280-490
               

               
Cow position:
               
chrX:47873227-47873442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
280-496
               

               
Cow position:
               
chrX:47165777-47165997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
177, 96
               

               
Conread position:
               
280-496
               

               
Cow position:
               
chrX:47484155-47484379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
280-497
               

               
Cow position:
               
chrX:488613-488379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 131
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chrX:1055272-1055553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
95, 260
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chrX:13913184-13912917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 160
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chrX:16996601-16996343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
95, 117
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chrX:34662737-34663007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
107, 248
               

               
Conread position:
               
284-467
               

               
Cow position:
               
chrX:48003951-48003769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
284-496
               

               
Cow position:
               
chrX:40320511-40320294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 135
               

               
Conread position:
               
284-536
               

               
Cow position:
               
chrX:27680503-27680242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 163
               

               
Conread position:
               
284-540
               

               
Cow position:
               
chrX:31948830-31949094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
103, 202
               

               
Conread position:
               
285-471
               

               
Cow position:
               
chrX:35590652-35590843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
285-487
               

               
Cow position:
               
chrX:25440894-25441092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
170, 93
               

               
Conread position:
               
287-458
               

               
Cow position:
               
chrX:33800423-33800254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
287-482
               

               
Cow position:
               
chrX:4296723-4296916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 89
               

               
Conread position:
               
287-486
               

               
Cow position:
               
chrX:21642380-21642578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
171, 110
               

               
Conread position:
               
287-496
               

               
Cow position:
               
chrX:38935381-38935174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
287-510
               

               
Cow position:
               
chrX:44873459-44873686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
287-540
               

               
Cow position:
               
chrX:45993332-45993055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
288-540
               

               
Cow position:
               
chrX:47344397-47344131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 245
               

               
Conread position:
               
289-481
               

               
Cow position:
               
chrX:36061260-36061060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
289-497
               

               
Cow position:
               
chrX:27685349-27685135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
289-526
               

               
Cow position:
               
chrX:46546775-46547021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
290-497
               

               
Cow position:
               
chrX:5063344-5063148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 45
               

               
Conread position:
               
291-540
               

               
Cow position:
               
chrX:26440687-26440943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
164, 44
               

               
Conread position:
               
293-429
               

               
Cow position:
               
chrX:44095356-44095218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
295-423
               

               
Cow position:
               
chrX:8097334-8097464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 106
               

               
Conread position:
               
297-433
               

               
Cow position:
               
chrX:9360979-9360844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
109, 114
               

               
Conread position:
               
297-443
               

               
Cow position:
               
chrX:11825552-11825694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
297-486
               

               
Cow position:
               
chrX:40826659-40826854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 81
               

               
Conread position:
               
297-497
               

               
Cow position:
               
chrX:2467976-2467771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
91, 123
               

               
Conread position:
               
297-498
               

               
Cow position:
               
chrX:27119789-27119586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 102
               

               
Conread position:
               
297-510
               

               
Cow position:
               
chrX:22921413-22921188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
297-510
               

               
Cow position:
               
chrX:40809785-40809558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chrX:842249-841995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
91, 77
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chrX:37843809-37843557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
298-476
               

               
Cow position:
               
chrX:48201384-48201205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
299-486
               

               
Cow position:
               
chrX:29938181-29937987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
299-497
               

               
Cow position:
               
chrX:12405291-12405499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
299-498
               

               
Cow position:
               
chrX:23300048-23299845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
143, 97
               

               
Conread position:
               
299-540
               

               
Cow position:
               
chrX:29542127-29542382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 179
               

               
Conread position:
               
300-454
               

               
Cow position:
               
chrX:43973634-43973479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
300-485
               

               
Cow position:
               
chrX:1572050-1572237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 97
               

               
Conread position:
               
302-497
               

               
Cow position:
               
chrX:20710161-20709963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
304-477
               

               
Cow position:
               
chrX:42507563-42507729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
304-496
               

               
Cow position:
               
chrX:4991928-4992127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 77
               

               
Conread position:
               
304-497
               

               
Cow position:
               
chrX:29723825-29723629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
151, 84
               

               
Conread position:
               
305-493
               

               
Cow position:
               
chrX:47657470-47657276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
305-540
               

               
Cow position:
               
chrX:47159436-47159673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
306-540
               

               
Cow position:
               
chrX:13785280-13785521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
308-497
               

               
Cow position:
               
chrX:19003374-19003188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
308-540
               

               
Cow position:
               
chrX:14900652-14900885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
180, 35
               

               
Conread position:
               
308-540
               

               
Cow position:
               
chrX:22466037-22465792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
7, 166
               

               
Conread position:
               
309-413
               

               
Cow position:
               
chrX:4390741-4390843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
310-456
               

               
Cow position:
               
chrX:13136153-13136299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
310-540
               

               
Cow position:
               
chrX:11589509-11589752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
144, 87
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chrX:24105702-24105465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
312-486
               

               
Cow position:
               
chrX:29487931-29488102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
145, 85
               

               
Conread position:
               
313-498
               

               
Cow position:
               
chrX:35822420-35822229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 124
               

               
Conread position:
               
316-540
               

               
Cow position:
               
chrX:6234376-6234612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
34, 215
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chrX:20790983-20790805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
319-539
               

               
Cow position:
               
chrX:41743984-41743750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
320-497
               

               
Cow position:
               
chrX:48035494-48035319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
167, 65
               

               
Conread position:
               
320-540
               

               
Cow position:
               
chrX:26875812-26876046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 156
               

               
Conread position:
               
321-512
               

               
Cow position:
               
chrX:1810092-1810295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 127
               

               
Conread position:
               
323-435
               

               
Cow position:
               
chrX:48664025-48663913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-540
               

               
Cow position:
               
chrX:19188996-19188773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
325-465
               

               
Cow position:
               
chrX:17301242-17301384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 136
               

               
Conread position:
               
325-522
               

               
Cow position:
               
chrX:48243403-48243597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
163, 11
               

               
Conread position:
               
326-540
               

               
Cow position:
               
chrX:39938460-39938686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
328-540
               

               
Cow position:
               
chrX:23970441-23970225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
328-540
               

               
Cow position:
               
chrX:41166901-41167128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 206
               

               
Conread position:
               
329-500
               

               
Cow position:
               
chrX:12018352-12018177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
126, 164
               

               
Conread position:
               
330-540
               

               
Cow position:
               
chrX:41991986-41992205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
334-540
               

               
Cow position:
               
chrX:25238235-25238013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
335-497
               

               
Cow position:
               
chrX:36961695-36961527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
120, 53
               

               
Conread position:
               
335-529
               

               
Cow position:
               
chrX:28845887-28845689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 164
               

               
Conread position:
               
335-540
               

               
Cow position:
               
chrX:9855352-9855137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
336-497
               

               
Cow position:
               
chrX:9954192-9954033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 101
               

               
Conread position:
               
337-540
               

               
Cow position:
               
chrX:42461692-42461909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
117, 138
               

               
Conread position:
               
337-540
               

               
Cow position:
               
chrX:42875035-42874814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
117, 60
               

               
Conread position:
               
338-497
               

               
Cow position:
               
chrX:35681393-35681226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
339-478
               

               
Cow position:
               
chrX:41199154-41199017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 6
               

               
Conread position:
               
339-537
               

               
Cow position:
               
chrX:34270452-34270246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
339-539
               

               
Cow position:
               
chrX:42994663-42994450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
339-540
               

               
Cow position:
               
chrX:15139497-15139708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 58
               

               
Conread position:
               
339-540
               

               
Cow position:
               
chrX:19015487-19015279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
341-540
               

               
Cow position:
               
chrX:16789808-16790001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
147, 7
               

               
Conread position:
               
344-540
               

               
Cow position:
               
chrX:20752297-20752096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
345-538
               

               
Cow position:
               
chrX:28157542-28157333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
345-540
               

               
Cow position:
               
chrX:17498129-17497933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
346-486
               

               
Cow position:
               
chrX:40648029-40647886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
108, 130
               

               
Conread position:
               
346-492
               

               
Cow position:
               
chrX:35848607-35848454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
346-494
               

               
Cow position:
               
chrX:8326802-8326651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 129
               

               
Conread position:
               
346-503
               

               
Cow position:
               
chrX:18999931-18999770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
346-512
               

               
Cow position:
               
chrX:28835859-28836034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 132
               

               
Conread position:
               
346-540
               

               
Cow position:
               
chrX:14925043-14924836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
346-540
               

               
Cow position:
               
chrX:29509395-29509607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
346-540
               

               
Cow position:
               
chrX:29563326-29563534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
347-496
               

               
Cow position:
               
chrX:47756886-47757040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
348-540
               

               
Cow position:
               
chrX:32127951-32128144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
351-540
               

               
Cow position:
               
chrX:26286019-26285816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 87
               

               
Conread position:
               
352-539
               

               
Cow position:
               
chrX:38439518-38439312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 127
               

               
Conread position:
               
353-525
               

               
Cow position:
               
chrX:35969050-35969227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chrX:9997298-9997497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chrX:14003610-14003808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chrX:45412625-45412818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
354-540
               

               
Cow position:
               
chrX:17908253-17908447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
362-477
               

               
Cow position:
               
chrX:25282988-25283106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
364-540
               

               
Cow position:
               
chrX:23497642-23497828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
369-508
               

               
Cow position:
               
chrX:32747703-32747561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 30
               
Show alignments to all cow chromosomes.