Cow genome map

Conread name: Ss1.1-Pig3-SRG8011E01.5

Conread position: 11-145
Cow position: chr1:31422192-31422058 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 11-187
Cow position: chr1:20989020-20989200 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 88, 0

Conread position: 11-244
Cow position: chr1:84149489-84149720 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 32, 93

Conread position: 11-251
Cow position: chr1:52918549-52918320 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 11-266
Cow position: chr1:57656614-57656867 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 237, 7

Conread position: 11-288
Cow position: chr1:99020892-99020618 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 124

Conread position: 11-452
Cow position: chr1:98865084-98864645 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 206

Conread position: 11-490
Cow position: chr1:18014122-18013649 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 293
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 231

Conread position: 11-519
Cow position: chr1:77655770-77656276 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 336
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 284, 7

Conread position: 11-540
Cow position: chr1:44101679-44101167 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 355
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 284, 132

Conread position: 11-540
Cow position: chr1:61738444-61737914 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 7

Conread position: 12-230
Cow position: chr1:87244881-87245098 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 84, 12

Conread position: 12-240
Cow position: chr1:67835070-67834842 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 84, 95

Conread position: 12-242
Cow position: chr1:18244315-18244085 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 84, 92

Conread position: 12-251
Cow position: chr1:13450278-13450515 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 84, 64

Conread position: 12-251
Cow position: chr1:17012668-17012430 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 156
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 12-251
Cow position: chr1:78360812-78361043 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 12-255
Cow position: chr1:32342006-32341767 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 164, 0

Conread position: 12-266
Cow position: chr1:8825120-8825372 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 83, 96

Conread position: 12-266
Cow position: chr1:89770615-89770361 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 229, 250

Conread position: 12-271
Cow position: chr1:46835593-46835853 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 83, 121

Conread position: 12-272
Cow position: chr1:102434969-102434711 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 128, 0

Conread position: 12-298
Cow position: chr1:79636861-79636583 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 187
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 12-533
Cow position: chr1:82355790-82356305 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 354
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 260, 46

Conread position: 13-205
Cow position: chr1:69287497-69287307 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 104, 93

Conread position: 13-224
Cow position: chr1:55276415-55276203 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 13-225
Cow position: chr1:87207357-87207145 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 177, 172

Conread position: 13-230
Cow position: chr1:89899631-89899417 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 200, 64

Conread position: 13-230
Cow position: chr1:95239440-95239657 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 13-239
Cow position: chr1:40308133-40308354 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 125, 0

Conread position: 13-239
Cow position: chr1:56489911-56490137 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 13-242
Cow position: chr1:33851349-33851577 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 83, 94

Conread position: 13-242
Cow position: chr1:45097767-45097994 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 200, 174

Conread position: 13-243
Cow position: chr1:42290458-42290683 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 159, 0

Conread position: 13-251
Cow position: chr1:8554399-8554637 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 13-251
Cow position: chr1:20828960-20829198 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 13-251
Cow position: chr1:28710987-28711225 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 88, 80

Conread position: 13-251
Cow position: chr1:30027476-30027243 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 90

Conread position: 13-251
Cow position: chr1:30283471-30283234 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 13-251
Cow position: chr1:40053426-40053664 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 83, 94

Conread position: 13-251
Cow position: chr1:40684620-40684382 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 100

Conread position: 13-251
Cow position: chr1:55322986-55322749 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 13-251
Cow position: chr1:60339376-60339614 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 13-251
Cow position: chr1:61309073-61309311 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 83, 94

Conread position: 13-251
Cow position: chr1:62925684-62925922 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 13-251
Cow position: chr1:69766533-69766771 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 83, 94

Conread position: 13-251
Cow position: chr1:80359108-80358872 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 83, 0

Conread position: 13-251
Cow position: chr1:82564574-82564812 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 13-251
Cow position: chr1:91899069-91899305 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 83, 39

Conread position: 13-252
Cow position: chr1:72136710-72136949 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 13-266
Cow position: chr1:13645784-13646035 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 228, 123

Conread position: 13-271
Cow position: chr1:82918591-82918338 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 80, 0

Conread position: 13-272
Cow position: chr1:25179960-25179703 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 230, 0

Conread position: 13-272
Cow position: chr1:101857913-101857659 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 13-279
Cow position: chr1:101149903-101150169 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 177, 172

Conread position: 13-297
Cow position: chr1:29362367-29362648 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 188
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 83, 94

Conread position: 13-307
Cow position: chr1:52233045-52232754 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 251, 245

Conread position: 15-294
Cow position: chr1:44138272-44137998 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 35, 0

Conread position: 16-222
Cow position: chr1:40953976-40954181 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 16-242
Cow position: chr1:88635445-88635670 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 79, 94

Conread position: 16-251
Cow position: chr1:21087487-21087722 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 80, 91

Conread position: 16-251
Cow position: chr1:21356564-21356342 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 72, 144

Conread position: 16-251
Cow position: chr1:31396764-31396999 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 80, 91

Conread position: 16-251
Cow position: chr1:82652727-82652962 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 80, 91

Conread position: 16-251
Cow position: chr1:82913070-82912835 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 80, 91

Conread position: 16-258
Cow position: chr1:25887091-25886848 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 152

Conread position: 16-266
Cow position: chr1:1461257-1461009 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 82, 56

Conread position: 16-266
Cow position: chr1:72657060-72657310 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 232, 246

Conread position: 16-269
Cow position: chr1:33712137-33712390 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 84, 92

Conread position: 16-287
Cow position: chr1:39481909-39481639 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 0

Conread position: 16-306
Cow position: chr1:19992609-19992328 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 262, 133

Conread position: 16-514
Cow position: chr1:63501527-63502024 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 329
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 256, 171

Conread position: 16-519
Cow position: chr1:80555998-80555517 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 333
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 279, 48

Conread position: 17-268
Cow position: chr1:54365749-54365507 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 17-461
Cow position: chr1:99375035-99375474 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 296
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 79, 105

Conread position: 22-272
Cow position: chr1:79456893-79456644 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 221, 0

Conread position: 22-272
Cow position: chr1:100597294-100597046 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 221, 0

Conread position: 24-540
Cow position: chr1:38396310-38396792 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 124

Conread position: 156-540
Cow position: chr1:31422066-31421705 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 50

Conread position: 350-540
Cow position: chr1:44137649-44137471 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.