Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 11-251 |
| Cow position: | chr10:39179877-39180115 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 11-271 |
| Cow position: | chr10:40152362-40152104 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 11-527 |
| Cow position: | chr10:21076455-21076982 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 78 |
| Conread position: | 11-540 |
| Cow position: | chr10:24978044-24977525 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 52 |
| Conread position: | 12-230 |
| Cow position: | chr10:16475856-16476067 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 12-251 |
| Cow position: | chr10:25565165-25564926 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-251 |
| Cow position: | chr10:41567200-41567434 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 12-272 |
| Cow position: | chr10:19511699-19511957 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 13-224 |
| Cow position: | chr10:32578384-32578594 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 13-251 |
| Cow position: | chr10:8328179-8327939 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 67, 166 |
| Conread position: | 13-251 |
| Cow position: | chr10:14803929-14804168 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 101 |
| Conread position: | 13-251 |
| Cow position: | chr10:19758445-19758680 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 100, 80 |
| Conread position: | 13-251 |
| Cow position: | chr10:34318197-34317963 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 86, 108 |
| Conread position: | 13-251 |
| Cow position: | chr10:39817269-39817031 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-260 |
| Cow position: | chr10:51952524-51952281 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 13-266 |
| Cow position: | chr10:34685987-34686240 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 165, 231 |
| Conread position: | 13-271 |
| Cow position: | chr10:39853920-39853660 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 102, 231 |
| Conread position: | 13-271 |
| Cow position: | chr10:62216700-62216957 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 13-271 |
| Cow position: | chr10:62778441-62778698 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 184, 231 |
| Conread position: | 13-291 |
| Cow position: | chr10:29696330-29696606 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 231, 90 |
| Conread position: | 13-540 |
| Cow position: | chr10:6260703-6260183 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 214 |
| Conread position: | 15-204 |
| Cow position: | chr10:24313739-24313551 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 15-257 |
| Cow position: | chr10:31537362-31537604 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 230, 149 |
| Conread position: | 16-172 |
| Cow position: | chr10:29632766-29632609 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 16-230 |
| Cow position: | chr10:13365773-13365559 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-230 |
| Cow position: | chr10:25498449-25498663 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-251 |
| Cow position: | chr10:280523-280289 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 16-251 |
| Cow position: | chr10:19496189-19495954 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-251 |
| Cow position: | chr10:41157545-41157779 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 16-268 |
| Cow position: | chr10:15862040-15861791 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 92 |
| Conread position: | 16-304 |
| Cow position: | chr10:23431906-23432195 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 76, 204 |
| Conread position: | 17-295 |
| Cow position: | chr10:33346698-33346975 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 17-485 |
| Cow position: | chr10:11820431-11820907 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 137 |
| Conread position: | 18-251 |
| Cow position: | chr10:21740652-21740420 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 19-227 |
| Cow position: | chr10:46694276-46694068 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-242 |
| Cow position: | chr10:10478041-10477813 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 26-285 |
| Cow position: | chr10:1367200-1367449 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 30-258 |
| Cow position: | chr10:41389433-41389206 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 78, 103 |
| Conread position: | 41-309 |
| Cow position: | chr10:53364085-53364348 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 42-251 |
| Cow position: | chr10:19802679-19802885 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 49-432 |
| Cow position: | chr10:20396846-20397214 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 52-452 |
| Cow position: | chr10:39880916-39880517 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 114-540 |
| Cow position: | chr10:64302951-64302534 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 143 |
Show alignments to all cow chromosomes.