Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 10-540 |
| Cow position: | chr11:44230847-44231366 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 8 |
| Conread position: | 11-132 |
| Cow position: | chr11:13067292-13067171 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-132 |
| Cow position: | chr11:13162712-13162833 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-540 |
| Cow position: | chr11:36761822-36762325 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 12-209 |
| Cow position: | chr11:17280563-17280370 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 12-216 |
| Cow position: | chr11:40776811-40776607 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-230 |
| Cow position: | chr11:28230023-28229804 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 12-251 |
| Cow position: | chr11:15983355-15983594 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 101 |
| Conread position: | 12-251 |
| Cow position: | chr11:52419119-52419358 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-251 |
| Cow position: | chr11:53287724-53287486 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 13-198 |
| Cow position: | chr11:30304966-30305148 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 13-199 |
| Cow position: | chr11:44860797-44860611 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-208 |
| Cow position: | chr11:66726197-66726389 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 13-209 |
| Cow position: | chr11:8519725-8519920 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 147, 121 |
| Conread position: | 13-242 |
| Cow position: | chr11:5343485-5343256 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-242 |
| Cow position: | chr11:8261971-8261743 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:3492743-3492981 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 100 |
| Conread position: | 13-251 |
| Cow position: | chr11:17107954-17107716 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr11:19064517-19064279 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:20921013-20920775 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:36744448-36744210 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:37477387-37477149 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:57628314-57628076 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr11:61401319-61401081 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:64045730-64045968 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:67450231-67450468 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 13-251 |
| Cow position: | chr11:67846839-67846601 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr11:73477040-73477278 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-255 |
| Cow position: | chr11:87127574-87127812 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-259 |
| Cow position: | chr11:8887424-8887179 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 82, 93 |
| Conread position: | 13-266 |
| Cow position: | chr11:12351333-12351080 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 79, 91 |
| Conread position: | 13-272 |
| Cow position: | chr11:11987839-11988097 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 149 |
| Conread position: | 13-286 |
| Cow position: | chr11:34020620-34020895 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 83, 248 |
| Conread position: | 14-266 |
| Cow position: | chr11:48084846-48085097 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 233, 88 |
| Conread position: | 15-505 |
| Cow position: | chr11:18073687-18073194 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 81, 92 |
| Conread position: | 16-207 |
| Cow position: | chr11:32685018-32685211 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 83, 137 |
| Conread position: | 16-251 |
| Cow position: | chr11:32450603-32450837 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 16-271 |
| Cow position: | chr11:21466812-21467065 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 16-293 |
| Cow position: | chr11:8282812-8283086 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 18-266 |
| Cow position: | chr11:45111098-45111354 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 252 |
| Conread position: | 18-540 |
| Cow position: | chr11:30187031-30187528 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 137 |
| Conread position: | 19-230 |
| Cow position: | chr11:38505866-38505656 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 88 |
| Conread position: | 19-242 |
| Cow position: | chr11:25527297-25527519 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 76 |
| Conread position: | 22-271 |
| Cow position: | chr11:28054858-28054610 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 23-251 |
| Cow position: | chr11:1496331-1496104 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 23-264 |
| Cow position: | chr11:37065379-37065132 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 137, 141 |
| Conread position: | 34-268 |
| Cow position: | chr11:39833502-39833740 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 110 |
| Conread position: | 113-305 |
| Cow position: | chr11:30205087-30205270 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 178-540 |
| Cow position: | chr11:13067157-13066813 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 54 |
| Conread position: | 178-540 |
| Cow position: | chr11:13162847-13163197 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 75 |
| Conread position: | 339-533 |
| Cow position: | chr11:30205590-30205777 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 350-540 |
| Cow position: | chr11:36713433-36713251 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.