Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 4-224 |
| Cow position: | chr14:9516500-9516281 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 11-256 |
| Cow position: | chr14:45303692-45303447 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-268 |
| Cow position: | chr14:44226073-44226325 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 135, 18 |
| Conread position: | 11-279 |
| Cow position: | chr14:38146256-38146513 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 211, 91 |
| Conread position: | 11-516 |
| Cow position: | chr14:38816533-38816042 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 27 |
| Conread position: | 11-533 |
| Cow position: | chr14:48406016-48405504 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 12-261 |
| Cow position: | chr14:45205753-45206000 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 12-272 |
| Cow position: | chr14:11154493-11154234 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 150 |
| Conread position: | 13-230 |
| Cow position: | chr14:13480060-13479843 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-230 |
| Cow position: | chr14:45767676-45767893 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-242 |
| Cow position: | chr14:41085108-41084878 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 93 |
| Conread position: | 13-251 |
| Cow position: | chr14:750244-750482 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr14:2284013-2284251 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr14:9045240-9045478 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr14:17491782-17491544 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr14:23257033-23257271 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 83, 100 |
| Conread position: | 13-251 |
| Cow position: | chr14:23901126-23900888 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr14:29048228-29047991 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 13-251 |
| Cow position: | chr14:30585277-30585040 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr14:33394102-33393864 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr14:44422228-44422466 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr14:45771100-45770867 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 13-255 |
| Cow position: | chr14:45850898-45851140 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 231, 31 |
| Conread position: | 13-266 |
| Cow position: | chr14:36967929-36968180 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 91 |
| Conread position: | 13-266 |
| Cow position: | chr14:47624234-47624480 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 235, 150 |
| Conread position: | 13-272 |
| Cow position: | chr14:44130589-44130848 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 235, 138 |
| Conread position: | 13-275 |
| Cow position: | chr14:22019069-22019327 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 13-297 |
| Cow position: | chr14:45672370-45672090 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 87, 95 |
| Conread position: | 16-242 |
| Cow position: | chr14:19619897-19620123 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-245 |
| Cow position: | chr14:42123524-42123293 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 16-249 |
| Cow position: | chr14:23260244-23260018 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 94 |
| Conread position: | 16-257 |
| Cow position: | chr14:32534068-32533843 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 16-266 |
| Cow position: | chr14:22242557-22242809 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 17-266 |
| Cow position: | chr14:45917094-45917345 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 247 |
| Conread position: | 17-271 |
| Cow position: | chr14:38532615-38532362 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 231 |
| Conread position: | 17-287 |
| Cow position: | chr14:45712308-45712040 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 227, 143 |
| Conread position: | 19-230 |
| Cow position: | chr14:7830860-7830649 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-179 |
| Cow position: | chr14:21743287-21743443 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 23-266 |
| Cow position: | chr14:5201397-5201154 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 225, 239 |
| Conread position: | 24-262 |
| Cow position: | chr14:35928865-35929098 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 82 |
| Conread position: | 38-539 |
| Cow position: | chr14:30706988-30706491 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 115 |
| Conread position: | 42-252 |
| Cow position: | chr14:45029420-45029211 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 159-443 |
| Cow position: | chr14:34044211-34043943 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 222-530 |
| Cow position: | chr14:42123077-42122785 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 77, 17 |
| Conread position: | 267-540 |
| Cow position: | chr14:9516278-9516010 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 74 |
Show alignments to all cow chromosomes.