Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 11-255 |
| Cow position: | chr15:17787494-17787251 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 188 |
| Conread position: | 11-540 |
| Cow position: | chr15:20357611-20357093 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 150 |
| Conread position: | 12-208 |
| Cow position: | chr15:35735130-35735326 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 92 |
| Conread position: | 12-232 |
| Cow position: | chr15:51800406-51800619 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 12-243 |
| Cow position: | chr15:11624585-11624813 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 141 |
| Conread position: | 12-251 |
| Cow position: | chr15:3888555-3888793 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 12-251 |
| Cow position: | chr15:28490466-28490227 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 103 |
| Conread position: | 12-258 |
| Cow position: | chr15:8408228-8408475 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 145 |
| Conread position: | 12-266 |
| Cow position: | chr15:2924564-2924814 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 12-270 |
| Cow position: | chr15:4961305-4961559 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 129 |
| Conread position: | 12-271 |
| Cow position: | chr15:8099162-8099419 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 178, 91 |
| Conread position: | 12-272 |
| Cow position: | chr15:21666072-21665813 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 221, 0 |
| Conread position: | 12-286 |
| Cow position: | chr15:3010176-3009905 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-383 |
| Cow position: | chr15:32672563-32672920 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 136 |
| Conread position: | 12-509 |
| Cow position: | chr15:11299137-11298622 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 333 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 115, 289 |
| Conread position: | 13-191 |
| Cow position: | chr15:22920801-22920979 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-206 |
| Cow position: | chr15:38979595-38979787 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 91 |
| Conread position: | 13-223 |
| Cow position: | chr15:41365856-41366060 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 13-224 |
| Cow position: | chr15:4678153-4678363 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 87, 95 |
| Conread position: | 13-230 |
| Cow position: | chr15:1772175-1772391 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 13-230 |
| Cow position: | chr15:2647980-2647763 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-243 |
| Cow position: | chr15:4733535-4733764 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 13-251 |
| Cow position: | chr15:1519473-1519236 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 166, 39 |
| Conread position: | 13-251 |
| Cow position: | chr15:1834784-1834547 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 72 |
| Conread position: | 13-251 |
| Cow position: | chr15:4143141-4142904 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 13-251 |
| Cow position: | chr15:4196139-4196377 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr15:7921965-7921729 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 13-251 |
| Cow position: | chr15:17080525-17080288 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr15:18268311-18268073 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr15:29009519-29009753 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 13-264 |
| Cow position: | chr15:6370102-6369850 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 235, 19 |
| Conread position: | 13-266 |
| Cow position: | chr15:21961183-21961436 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 235, 249 |
| Conread position: | 13-266 |
| Cow position: | chr15:32494710-32494459 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 13-269 |
| Cow position: | chr15:12421490-12421238 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 13-271 |
| Cow position: | chr15:17271721-17271465 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 13-272 |
| Cow position: | chr15:6078416-6078675 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 87, 98 |
| Conread position: | 13-307 |
| Cow position: | chr15:35747969-35748260 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 264, 227 |
| Conread position: | 15-266 |
| Cow position: | chr15:10787451-10787200 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 233, 247 |
| Conread position: | 16-181 |
| Cow position: | chr15:7788691-7788527 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 16-230 |
| Cow position: | chr15:3037835-3037619 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 84, 97 |
| Conread position: | 16-239 |
| Cow position: | chr15:17292117-17292339 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 16-242 |
| Cow position: | chr15:14582939-14582715 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 16-251 |
| Cow position: | chr15:50124260-50124028 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 16-256 |
| Cow position: | chr15:6622019-6622255 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 16-257 |
| Cow position: | chr15:2007221-2007454 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 231, 57 |
| Conread position: | 16-259 |
| Cow position: | chr15:6593264-6593022 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 232, 48 |
| Conread position: | 16-266 |
| Cow position: | chr15:4795359-4795604 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 16-271 |
| Cow position: | chr15:1763771-1764021 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 16-293 |
| Cow position: | chr15:51672027-51672306 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 191, 66 |
| Conread position: | 16-294 |
| Cow position: | chr15:18023109-18022821 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 222 |
| Conread position: | 17-242 |
| Cow position: | chr15:7894550-7894327 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 205, 143 |
| Conread position: | 17-251 |
| Cow position: | chr15:20749095-20749329 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-255 |
| Cow position: | chr15:15265975-15265744 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 157, 84 |
| Conread position: | 23-230 |
| Cow position: | chr15:7522807-7522601 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 23-266 |
| Cow position: | chr15:6156268-6156026 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 24-256 |
| Cow position: | chr15:24715913-24716137 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 27-242 |
| Cow position: | chr15:4671118-4671333 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 163, 134 |
| Conread position: | 27-272 |
| Cow position: | chr15:31358576-31358819 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 44-539 |
| Cow position: | chr15:30810336-30810810 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 61-540 |
| Cow position: | chr15:498111-498564 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 235, 58 |
| Conread position: | 82-265 |
| Cow position: | chr15:12453161-12453345 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 19 |
Show alignments to all cow chromosomes.