Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 11-243 |
| Cow position: | chr18:16393535-16393304 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 11-255 |
| Cow position: | chr18:19407264-19407018 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 224 |
| Conread position: | 11-256 |
| Cow position: | chr18:16722628-16722385 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 11-266 |
| Cow position: | chr18:39748690-39748943 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 11-534 |
| Cow position: | chr18:9186655-9186159 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 49 |
| Conread position: | 12-251 |
| Cow position: | chr18:51341799-51342038 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-252 |
| Cow position: | chr18:55088812-55088572 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-255 |
| Cow position: | chr18:16078830-16079074 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-271 |
| Cow position: | chr18:33335980-33336232 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 12-272 |
| Cow position: | chr18:14416089-14416347 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 12-272 |
| Cow position: | chr18:23797760-23798019 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 12-317 |
| Cow position: | chr18:29236923-29237225 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 273, 37 |
| Conread position: | 12-451 |
| Cow position: | chr18:46877895-46877447 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 93 |
| Conread position: | 13-150 |
| Cow position: | chr18:43201168-43201305 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-209 |
| Cow position: | chr18:2019572-2019375 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 82, 152 |
| Conread position: | 13-230 |
| Cow position: | chr18:51689738-51689955 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-232 |
| Cow position: | chr18:51258097-51258316 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 82, 91 |
| Conread position: | 13-242 |
| Cow position: | chr18:48221993-48222221 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 79, 91 |
| Conread position: | 13-242 |
| Cow position: | chr18:51310699-51310926 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 13-251 |
| Cow position: | chr18:22602601-22602839 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr18:24040619-24040380 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 13-266 |
| Cow position: | chr18:33268939-33269193 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 13-269 |
| Cow position: | chr18:43146812-43146557 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 13-271 |
| Cow position: | chr18:33358981-33359235 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 16-242 |
| Cow position: | chr18:6869142-6868916 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 16-243 |
| Cow position: | chr18:53785953-53786181 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 196 |
| Conread position: | 16-251 |
| Cow position: | chr18:47742135-47742370 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 16-256 |
| Cow position: | chr18:37599421-37599185 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 16-258 |
| Cow position: | chr18:5980550-5980788 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 16-266 |
| Cow position: | chr18:19539463-19539218 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 225, 171 |
| Conread position: | 17-209 |
| Cow position: | chr18:114509-114699 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 17-253 |
| Cow position: | chr18:44601637-44601872 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 119, 168 |
| Conread position: | 18-243 |
| Cow position: | chr18:36210999-36210775 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 218, 103 |
| Conread position: | 18-334 |
| Cow position: | chr18:54171741-54171433 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 19-251 |
| Cow position: | chr18:23944255-23944023 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-271 |
| Cow position: | chr18:35335599-35335849 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 31-251 |
| Cow position: | chr18:51462946-51462727 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 82 |
| Conread position: | 84-512 |
| Cow position: | chr18:46869004-46868575 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 122-540 |
| Cow position: | chr18:4885354-4884944 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 35 |
Show alignments to all cow chromosomes.