Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 11-187 |
| Cow position: | chr22:8895766-8895941 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 11-250 |
| Cow position: | chr22:870847-870608 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 84, 96 |
| Conread position: | 11-286 |
| Cow position: | chr22:293141-292876 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 102 |
| Conread position: | 11-320 |
| Cow position: | chr22:8875008-8875316 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 145 |
| Conread position: | 11-328 |
| Cow position: | chr22:41238192-41238504 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 11-392 |
| Cow position: | chr22:34607077-34607450 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 133, 91 |
| Conread position: | 11-533 |
| Cow position: | chr22:11782509-11782015 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 332 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 86, 101 |
| Conread position: | 11-540 |
| Cow position: | chr22:298316-297783 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 53 |
| Conread position: | 11-540 |
| Cow position: | chr22:36581158-36580648 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 38 |
| Conread position: | 12-251 |
| Cow position: | chr22:27309753-27309514 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-266 |
| Cow position: | chr22:35943186-35942937 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 12-272 |
| Cow position: | chr22:31335013-31334759 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 13-206 |
| Cow position: | chr22:32485331-32485139 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 13-242 |
| Cow position: | chr22:117821-117592 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-242 |
| Cow position: | chr22:1319418-1319647 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-242 |
| Cow position: | chr22:36736784-36737009 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 141, 51 |
| Conread position: | 13-243 |
| Cow position: | chr22:32347957-32347739 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 13-251 |
| Cow position: | chr22:6020683-6020921 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr22:10546666-10546904 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr22:10909812-10909574 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 13-251 |
| Cow position: | chr22:20240820-20240583 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-262 |
| Cow position: | chr22:21365387-21365127 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 136, 90 |
| Conread position: | 13-266 |
| Cow position: | chr22:36533722-36533467 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 197, 251 |
| Conread position: | 13-266 |
| Cow position: | chr22:39882155-39881902 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 80, 97 |
| Conread position: | 13-268 |
| Cow position: | chr22:5672758-5673014 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 13-271 |
| Cow position: | chr22:309799-310056 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 13-272 |
| Cow position: | chr22:8136181-8135921 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 13-272 |
| Cow position: | chr22:34168353-34168610 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 13-321 |
| Cow position: | chr22:11030981-11031288 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 16-230 |
| Cow position: | chr22:16200497-16200712 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 16-251 |
| Cow position: | chr22:46581561-46581329 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 16-308 |
| Cow position: | chr22:327135-326859 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 19-267 |
| Cow position: | chr22:46547637-46547389 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 19-269 |
| Cow position: | chr22:46853370-46853619 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 141, 119 |
| Conread position: | 23-251 |
| Cow position: | chr22:18027311-18027538 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 23-321 |
| Cow position: | chr22:13917534-13917831 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 289, 224 |
| Conread position: | 41-230 |
| Cow position: | chr22:8149503-8149321 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 41-266 |
| Cow position: | chr22:42771504-42771729 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 207, 221 |
| Conread position: | 45-294 |
| Cow position: | chr22:36592460-36592214 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 49-266 |
| Cow position: | chr22:38938026-38937809 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 168 |
| Conread position: | 199-490 |
| Cow position: | chr22:36552897-36552632 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 290-524 |
| Cow position: | chr22:36591528-36591303 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 340-540 |
| Cow position: | chr22:8875556-8875763 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 355-540 |
| Cow position: | chr22:292502-292318 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
Show alignments to all cow chromosomes.