Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 11-230 |
| Cow position: | chr3:16866834-16866607 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 11-253 |
| Cow position: | chr3:54785709-54785947 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 11-266 |
| Cow position: | chr3:32617972-32617717 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 237, 165 |
| Conread position: | 11-279 |
| Cow position: | chr3:16073084-16073348 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 220, 139 |
| Conread position: | 11-293 |
| Cow position: | chr3:29595144-29595423 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 149, 49 |
| Conread position: | 12-219 |
| Cow position: | chr3:50915252-50915461 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 12-251 |
| Cow position: | chr3:39326664-39326904 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 12-251 |
| Cow position: | chr3:41211789-41211550 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-251 |
| Cow position: | chr3:56321264-56321502 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-251 |
| Cow position: | chr3:66891013-66890776 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 12-269 |
| Cow position: | chr3:14439813-14439556 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-297 |
| Cow position: | chr3:3054546-3054826 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 12-539 |
| Cow position: | chr3:18729192-18728687 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 10 |
| Conread position: | 13-199 |
| Cow position: | chr3:29327032-29326845 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 13-206 |
| Cow position: | chr3:5047235-5047042 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-208 |
| Cow position: | chr3:18356938-18356743 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-224 |
| Cow position: | chr3:55229753-55229541 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 13-230 |
| Cow position: | chr3:24314417-24314635 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 13-239 |
| Cow position: | chr3:45032690-45032916 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 100 |
| Conread position: | 13-242 |
| Cow position: | chr3:472481-472710 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr3:7158783-7158546 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 147, 99 |
| Conread position: | 13-251 |
| Cow position: | chr3:36864410-36864172 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 136, 129 |
| Conread position: | 13-251 |
| Cow position: | chr3:64028136-64027899 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 83, 72 |
| Conread position: | 13-255 |
| Cow position: | chr3:14754348-14754108 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 147, 151 |
| Conread position: | 13-256 |
| Cow position: | chr3:4027220-4027466 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 13-259 |
| Cow position: | chr3:77474709-77474958 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 98 |
| Conread position: | 13-264 |
| Cow position: | chr3:45869268-45869017 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 235, 171 |
| Conread position: | 13-266 |
| Cow position: | chr3:2654055-2654304 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 82, 173 |
| Conread position: | 13-266 |
| Cow position: | chr3:5829679-5829429 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 13-266 |
| Cow position: | chr3:31354316-31354062 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 13-266 |
| Cow position: | chr3:31898028-31897775 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 235, 249 |
| Conread position: | 13-266 |
| Cow position: | chr3:66119604-66119857 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 235, 249 |
| Conread position: | 13-269 |
| Cow position: | chr3:19722672-19722418 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 249, 51 |
| Conread position: | 13-287 |
| Cow position: | chr3:42580018-42579743 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 13-297 |
| Cow position: | chr3:7168743-7169022 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-307 |
| Cow position: | chr3:56340478-56340188 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 16-230 |
| Cow position: | chr3:40157553-40157340 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 16-251 |
| Cow position: | chr3:68873802-68873568 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 16-251 |
| Cow position: | chr3:77423633-77423861 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 16-266 |
| Cow position: | chr3:2633877-2634122 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 232, 169 |
| Conread position: | 16-540 |
| Cow position: | chr3:17936112-17935584 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 17-251 |
| Cow position: | chr3:46861350-46861116 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-266 |
| Cow position: | chr3:34396127-34395876 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 225, 191 |
| Conread position: | 18-540 |
| Cow position: | chr3:21305227-21304703 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 120 |
| Conread position: | 19-152 |
| Cow position: | chr3:49276165-49276034 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 19-242 |
| Cow position: | chr3:9716769-9716988 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 23-181 |
| Cow position: | chr3:17776045-17776201 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 23-230 |
| Cow position: | chr3:207202-206995 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-271 |
| Cow position: | chr3:66620137-66620378 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 30-230 |
| Cow position: | chr3:70083686-70083488 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 130, 134 |
| Conread position: | 49-240 |
| Cow position: | chr3:32623050-32622860 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 57-518 |
| Cow position: | chr3:49601943-49601512 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 29 |
| Conread position: | 110-540 |
| Cow position: | chr3:64821648-64822054 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 51 |
| Conread position: | 297-525 |
| Cow position: | chr3:37624529-37624744 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 350-540 |
| Cow position: | chr3:31415420-31415612 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 122, 0 |
Show alignments to all cow chromosomes.