Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 11-251 |
| Cow position: | chr5:46663850-46664089 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 11-271 |
| Cow position: | chr5:53626921-53626657 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 183 |
| Conread position: | 11-285 |
| Cow position: | chr5:28023002-28023272 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 11-308 |
| Cow position: | chr5:32945720-32946013 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 12-219 |
| Cow position: | chr5:12644091-12643888 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 12-251 |
| Cow position: | chr5:46775925-46776166 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 12-255 |
| Cow position: | chr5:46644534-46644778 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 12-265 |
| Cow position: | chr5:2430285-2430030 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 12-266 |
| Cow position: | chr5:9686580-9686325 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 148, 6 |
| Conread position: | 13-158 |
| Cow position: | chr5:5317909-5317764 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-158 |
| Cow position: | chr5:18653893-18654038 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-192 |
| Cow position: | chr5:41551079-41550901 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 13-199 |
| Cow position: | chr5:5786759-5786573 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-230 |
| Cow position: | chr5:24330122-24330339 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 79, 91 |
| Conread position: | 13-230 |
| Cow position: | chr5:27652135-27651917 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 13-230 |
| Cow position: | chr5:29042360-29042576 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 13-242 |
| Cow position: | chr5:14380011-14380239 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 13-250 |
| Cow position: | chr5:14346532-14346294 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 83, 141 |
| Conread position: | 13-251 |
| Cow position: | chr5:2531119-2531357 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr5:6589173-6588934 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 13-251 |
| Cow position: | chr5:10776416-10776178 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr5:24576763-24577001 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr5:31706424-31706660 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 13-251 |
| Cow position: | chr5:41962390-41962152 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr5:44459331-44459569 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr5:54932370-54932132 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr5:58195850-58196088 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-252 |
| Cow position: | chr5:26068869-26068639 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 13-256 |
| Cow position: | chr5:4019350-4019107 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-256 |
| Cow position: | chr5:14659246-14659011 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 222, 73 |
| Conread position: | 13-266 |
| Cow position: | chr5:26079370-26079115 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 13-266 |
| Cow position: | chr5:26769658-26769904 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 13-266 |
| Cow position: | chr5:39164950-39164699 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 235, 37 |
| Conread position: | 13-269 |
| Cow position: | chr5:10918646-10918902 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 216, 243 |
| Conread position: | 13-269 |
| Cow position: | chr5:32733404-32733149 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 13-271 |
| Cow position: | chr5:58334743-58334491 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 13-272 |
| Cow position: | chr5:29009203-29009458 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 13-272 |
| Cow position: | chr5:49182117-49182374 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 177, 111 |
| Conread position: | 13-275 |
| Cow position: | chr5:52433819-52434077 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 223, 36 |
| Conread position: | 13-284 |
| Cow position: | chr5:28031325-28031595 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 248, 0 |
| Conread position: | 13-529 |
| Cow position: | chr5:24108742-24108225 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 151 |
| Conread position: | 14-227 |
| Cow position: | chr5:18897845-18898059 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 94 |
| Conread position: | 16-239 |
| Cow position: | chr5:32673892-32673666 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 16-265 |
| Cow position: | chr5:17774189-17773940 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 88 |
| Conread position: | 16-269 |
| Cow position: | chr5:33185628-33185873 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 146 |
| Conread position: | 16-297 |
| Cow position: | chr5:59060472-59060747 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 60 |
| Conread position: | 17-251 |
| Cow position: | chr5:48468427-48468193 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-259 |
| Cow position: | chr5:53614518-53614756 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 21-230 |
| Cow position: | chr5:57977115-57977323 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 24-310 |
| Cow position: | chr5:45700125-45700408 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 25-266 |
| Cow position: | chr5:34202799-34203036 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 56-256 |
| Cow position: | chr5:51162791-51162989 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 123, 46 |
| Conread position: | 60-221 |
| Cow position: | chr5:58055858-58055697 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 137 |
Show alignments to all cow chromosomes.