Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 10-294 |
| Cow position: | chr7:68478520-68478797 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 11-142 |
| Cow position: | chr7:26851310-26851441 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-146 |
| Cow position: | chr7:30302124-30302259 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-504 |
| Cow position: | chr7:63951749-63951267 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 12-206 |
| Cow position: | chr7:51084685-51084875 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 12-251 |
| Cow position: | chr7:7257274-7257511 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-251 |
| Cow position: | chr7:11446634-11446874 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-251 |
| Cow position: | chr7:51014034-51014264 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 217, 92 |
| Conread position: | 12-251 |
| Cow position: | chr7:65339635-65339395 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 79, 161 |
| Conread position: | 12-256 |
| Cow position: | chr7:39556015-39555773 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 12-266 |
| Cow position: | chr7:33406163-33405910 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 12-266 |
| Cow position: | chr7:63385418-63385673 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 68, 251 |
| Conread position: | 12-271 |
| Cow position: | chr7:446552-446294 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 13-158 |
| Cow position: | chr7:38536589-38536733 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 13-203 |
| Cow position: | chr7:26890886-26891077 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 13-209 |
| Cow position: | chr7:36085416-36085611 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 13-209 |
| Cow position: | chr7:41869866-41869669 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 82, 94 |
| Conread position: | 13-224 |
| Cow position: | chr7:33878286-33878080 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 13-230 |
| Cow position: | chr7:1357606-1357389 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 176, 181 |
| Conread position: | 13-230 |
| Cow position: | chr7:61559293-61559510 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-242 |
| Cow position: | chr7:60463229-60463458 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr7:3234603-3234365 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr7:3301074-3300838 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 13-251 |
| Cow position: | chr7:6642798-6642559 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 13-251 |
| Cow position: | chr7:6648575-6648338 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-251 |
| Cow position: | chr7:20555794-20556032 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr7:23815890-23815652 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr7:43830945-43830707 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-252 |
| Cow position: | chr7:1400280-1400040 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 79, 91 |
| Conread position: | 13-268 |
| Cow position: | chr7:21310289-21310540 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 147, 47 |
| Conread position: | 13-269 |
| Cow position: | chr7:27540281-27540026 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 232, 20 |
| Conread position: | 13-269 |
| Cow position: | chr7:41490191-41490447 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 91 |
| Conread position: | 13-270 |
| Cow position: | chr7:68778074-68777819 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 13-271 |
| Cow position: | chr7:3730059-3730318 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 113 |
| Conread position: | 13-272 |
| Cow position: | chr7:21127582-21127325 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 13-313 |
| Cow position: | chr7:19048809-19048519 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 13-320 |
| Cow position: | chr7:35287480-35287171 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 82, 100 |
| Conread position: | 13-538 |
| Cow position: | chr7:27585026-27584501 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 352 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 16-222 |
| Cow position: | chr7:67417126-67417332 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 16-242 |
| Cow position: | chr7:35297188-35296961 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 16-509 |
| Cow position: | chr7:59028078-59028556 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 190, 93 |
| Conread position: | 16-534 |
| Cow position: | chr7:68084871-68085378 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 17-251 |
| Cow position: | chr7:29470207-29470439 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 17-266 |
| Cow position: | chr7:67484356-67484602 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 87, 55 |
| Conread position: | 17-277 |
| Cow position: | chr7:52120001-52119741 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 162, 143 |
| Conread position: | 18-251 |
| Cow position: | chr7:16787-16554 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-271 |
| Cow position: | chr7:58378125-58377872 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 204, 188 |
| Conread position: | 21-295 |
| Cow position: | chr7:39108151-39107876 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 253, 46 |
| Conread position: | 23-251 |
| Cow position: | chr7:7296797-7296572 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 23-266 |
| Cow position: | chr7:5183495-5183738 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 225, 239 |
| Conread position: | 23-271 |
| Cow position: | chr7:24056369-24056621 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 146 |
| Conread position: | 23-294 |
| Cow position: | chr7:25102119-25102385 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 250, 41 |
| Conread position: | 24-239 |
| Cow position: | chr7:52804623-52804412 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 25-306 |
| Cow position: | chr7:24934874-24934595 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 53-325 |
| Cow position: | chr7:41487674-41487938 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 152, 177 |
| Conread position: | 110-539 |
| Cow position: | chr7:67812343-67812768 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 32 |
| Conread position: | 110-540 |
| Cow position: | chr7:26851477-26851892 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 45 |
| Conread position: | 138-540 |
| Cow position: | chr7:30302434-30302823 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 63 |
| Conread position: | 355-540 |
| Cow position: | chr7:41876239-41876052 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 38 |
Show alignments to all cow chromosomes.