Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E01.5 |
| Conread position: | 4-270 |
| Cow position: | chr9:37095104-37095373 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-540 |
| Cow position: | chr9:3726191-3726729 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 243 |
| Conread position: | 11-539 |
| Cow position: | chr9:3394067-3393560 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 136 |
| Conread position: | 11-539 |
| Cow position: | chr9:64159033-64159572 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 13 |
| Conread position: | 12-251 |
| Cow position: | chr9:12845633-12845394 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 12-255 |
| Cow position: | chr9:9013024-9013268 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 12-257 |
| Cow position: | chr9:3006327-3006082 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 12-271 |
| Cow position: | chr9:42568790-42569051 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 232, 214 |
| Conread position: | 12-272 |
| Cow position: | chr9:6051131-6050872 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 167, 215 |
| Conread position: | 12-272 |
| Cow position: | chr9:60278103-60277845 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 12-309 |
| Cow position: | chr9:59510711-59511006 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 143 |
| Conread position: | 13-209 |
| Cow position: | chr9:18067300-18067104 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-219 |
| Cow position: | chr9:27934014-27934216 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 63 |
| Conread position: | 13-239 |
| Cow position: | chr9:780885-780659 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-242 |
| Cow position: | chr9:10315285-10315515 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 13-242 |
| Cow position: | chr9:34992312-34992541 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-250 |
| Cow position: | chr9:16268291-16268528 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr9:163584-163346 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr9:9055146-9054908 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr9:30826601-30826839 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 83, 100 |
| Conread position: | 13-251 |
| Cow position: | chr9:36724422-36724659 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 13-251 |
| Cow position: | chr9:40191757-40191519 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-251 |
| Cow position: | chr9:50789597-50789834 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 13-255 |
| Cow position: | chr9:25483793-25484035 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 83, 91 |
| Conread position: | 13-255 |
| Cow position: | chr9:34242676-34242435 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 235, 92 |
| Conread position: | 13-255 |
| Cow position: | chr9:45873268-45873511 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 13-265 |
| Cow position: | chr9:2500375-2500124 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 13-266 |
| Cow position: | chr9:37129618-37129373 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 91 |
| Conread position: | 13-271 |
| Cow position: | chr9:28626121-28625864 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 91 |
| Conread position: | 14-266 |
| Cow position: | chr9:54361356-54361602 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 16-251 |
| Cow position: | chr9:25755301-25755066 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-251 |
| Cow position: | chr9:31194244-31194009 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-271 |
| Cow position: | chr9:59443772-59444026 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 151 |
| Conread position: | 16-274 |
| Cow position: | chr9:1979901-1980159 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 251, 224 |
| Conread position: | 17-271 |
| Cow position: | chr9:3155951-3156198 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 17-540 |
| Cow position: | chr9:29328221-29328710 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 53 |
| Conread position: | 19-253 |
| Cow position: | chr9:15072440-15072675 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 225, 83 |
| Conread position: | 19-269 |
| Cow position: | chr9:35317652-35317401 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 223, 236 |
| Conread position: | 22-209 |
| Cow position: | chr9:37162878-37162691 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-272 |
| Cow position: | chr9:3542735-3542983 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 25-241 |
| Cow position: | chr9:5424255-5424037 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 25-269 |
| Cow position: | chr9:3586302-3586543 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 230, 7 |
| Conread position: | 27-519 |
| Cow position: | chr9:7012260-7012749 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 314 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 220, 47 |
| Conread position: | 31-276 |
| Cow position: | chr9:3025044-3025288 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 217, 54 |
| Conread position: | 52-251 |
| Cow position: | chr9:49177869-49177670 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-280 |
| Cow position: | chr9:20309568-20309346 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 350-540 |
| Cow position: | chr9:59511232-59511430 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 144 |
Show alignments to all cow chromosomes.