Cow genome map

Conread name: Ss1.1-Pig3-SRG8011E05.5

Conread position: 233-501
Cow position: chr20:14620028-14620287 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 172, 40

Conread position: 248-503
Cow position: chr20:20967584-20967335 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 166
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 249-503
Cow position: chr20:5702984-5702738 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 250-504
Cow position: chr20:23846401-23846652 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 34, 21

Conread position: 252-498
Cow position: chr20:2204422-2204665 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 67

Conread position: 253-503
Cow position: chr20:5078898-5078641 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 170
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 253-503
Cow position: chr20:24070060-24069820 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 116, 17

Conread position: 255-504
Cow position: chr20:398056-398293 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 29, 16

Conread position: 257-482
Cow position: chr20:19635924-19636141 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 13

Conread position: 257-489
Cow position: chr20:36312259-36312480 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 14, 0

Conread position: 257-498
Cow position: chr20:7737976-7738212 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 13, 68

Conread position: 257-501
Cow position: chr20:3148934-3148700 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 158, 18

Conread position: 257-503
Cow position: chr20:32847598-32847359 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 258-501
Cow position: chr20:6248341-6248585 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 161
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 13, 61

Conread position: 258-504
Cow position: chr20:15548636-15548883 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 13

Conread position: 259-503
Cow position: chr20:7624004-7624234 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 263-501
Cow position: chr20:4786780-4786994 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 19, 62

Conread position: 265-447
Cow position: chr20:26387705-26387531 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 10

Conread position: 265-487
Cow position: chr20:23358244-23358461 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 60

Conread position: 265-504
Cow position: chr20:16941033-16941274 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 7

Conread position: 266-493
Cow position: chr20:4891869-4892095 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 48

Conread position: 268-487
Cow position: chr20:37090886-37090652 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 268-502
Cow position: chr20:3255280-3255052 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 7

Conread position: 268-503
Cow position: chr20:26996781-26996545 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 57

Conread position: 269-503
Cow position: chr20:2298551-2298772 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 269-503
Cow position: chr20:38090162-38089927 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 70

Conread position: 270-503
Cow position: chr20:10209052-10208822 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 13, 55

Conread position: 270-503
Cow position: chr20:25009388-25009619 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 13, 44

Conread position: 272-497
Cow position: chr20:3564396-3564180 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 11, 59

Conread position: 272-503
Cow position: chr20:8556027-8556254 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 11, 42

Conread position: 272-504
Cow position: chr20:14880027-14879802 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 6, 0

Conread position: 274-503
Cow position: chr20:7438616-7438837 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 9, 40

Conread position: 275-499
Cow position: chr20:20158371-20158154 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 8, 39

Conread position: 275-502
Cow position: chr20:11751894-11751669 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 50

Conread position: 275-503
Cow position: chr20:8578495-8578263 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 53

Conread position: 275-504
Cow position: chr20:22065301-22065085 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 50

Conread position: 278-502
Cow position: chr20:6240283-6240505 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 5, 32

Conread position: 278-503
Cow position: chr20:12581719-12581940 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 6, 47

Conread position: 278-503
Cow position: chr20:28605443-28605224 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 37

Conread position: 278-503
Cow position: chr20:38515025-38514793 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 47, 123

Conread position: 278-504
Cow position: chr20:14807120-14806900 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 9, 47

Conread position: 280-503
Cow position: chr20:14980273-14980495 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 39

Conread position: 281-468
Cow position: chr20:27407662-27407838 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 160, 17

Conread position: 281-476
Cow position: chr20:26040864-26041057 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 90, 43

Conread position: 281-490
Cow position: chr20:39268849-39269058 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 76, 32

Conread position: 281-498
Cow position: chr20:25161898-25162106 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 187, 41

Conread position: 281-499
Cow position: chr20:24097228-24097019 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 43, 0

Conread position: 281-500
Cow position: chr20:12420386-12420601 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 82, 40

Conread position: 281-500
Cow position: chr20:15766349-15766128 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 42

Conread position: 281-503
Cow position: chr20:16935073-16935296 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 7, 156

Conread position: 281-503
Cow position: chr20:18379610-18379393 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 281-503
Cow position: chr20:33623326-33623538 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 281-504
Cow position: chr20:3599169-3599382 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 111, 23

Conread position: 281-504
Cow position: chr20:39398715-39398493 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 216, 59

Conread position: 282-475
Cow position: chr20:19834599-19834788 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 282-503
Cow position: chr20:28982930-28982716 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 82, 37

Conread position: 283-498
Cow position: chr20:7425967-7426178 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 283-503
Cow position: chr20:8547291-8547082 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 121, 26

Conread position: 290-471
Cow position: chr20:20590080-20590255 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 291-503
Cow position: chr20:31746413-31746626 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 147
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 28

Conread position: 302-504
Cow position: chr20:15530075-15529874 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 35, 57

Conread position: 304-485
Cow position: chr20:24314821-24315001 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 321-503
Cow position: chr20:7756432-7756608 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 321-504
Cow position: chr20:17100555-17100376 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 322-502
Cow position: chr20:32866001-32866171 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 323-499
Cow position: chr20:35444908-35445085 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 0

Conread position: 323-500
Cow position: chr20:12239491-12239664 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 155, 34

Conread position: 323-503
Cow position: chr20:19060645-19060823 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 134, 112

Conread position: 323-503
Cow position: chr20:32463330-32463506 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 128, 0

Conread position: 323-504
Cow position: chr20:20203409-20203231 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 34

Conread position: 326-504
Cow position: chr20:40177436-40177258 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 341-493
Cow position: chr20:39155588-39155439 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 343-500
Cow position: chr20:21815735-21815578 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 343-503
Cow position: chr20:11550541-11550384 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 93

Conread position: 343-503
Cow position: chr20:22030491-22030336 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 343-504
Cow position: chr20:26723507-26723663 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 347-502
Cow position: chr20:8619979-8620133 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 12, 31

Conread position: 352-504
Cow position: chr20:8912334-8912486 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 122, 15

Conread position: 355-503
Cow position: chr20:9412650-9412502 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 357-503
Cow position: chr20:39266798-39266942 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 360-503
Cow position: chr20:19459508-19459651 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 360-503
Cow position: chr20:30888192-30888046 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 360-503
Cow position: chr20:36207971-36207822 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 112, 0

Conread position: 360-504
Cow position: chr20:22978484-22978340 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 361-500
Cow position: chr20:38768307-38768443 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 361-504
Cow position: chr20:13752381-13752236 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 361-504
Cow position: chr20:21204508-21204371 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 363-502
Cow position: chr20:8817337-8817476 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 363-504
Cow position: chr20:26077514-26077655 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 367-502
Cow position: chr20:19363213-19363347 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 367-503
Cow position: chr20:35710326-35710188 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 367-503
Cow position: chr20:38670900-38670764 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 370-503
Cow position: chr20:6358767-6358634 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 372-504
Cow position: chr20:28441472-28441340 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 374-499
Cow position: chr20:33363661-33363536 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 390-503
Cow position: chr20:3606834-3606946 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Show alignments to all cow chromosomes.