Cow genome map

Conread name: Ss1.1-Pig3-SRG8011E05.5

Conread position: 114-502
Cow position: chr24:27725687-27726064 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 256
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 169, 34

Conread position: 249-504
Cow position: chr24:42175721-42175476 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 189, 23

Conread position: 252-501
Cow position: chr24:37650871-37650622 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 151

Conread position: 253-471
Cow position: chr24:35029861-35030082 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 104

Conread position: 254-503
Cow position: chr24:26001579-26001334 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 164
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 71, 24

Conread position: 256-502
Cow position: chr24:41406083-41405838 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 17

Conread position: 258-448
Cow position: chr24:21887262-21887456 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 25, 17

Conread position: 258-501
Cow position: chr24:27348987-27349225 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 66, 14

Conread position: 258-502
Cow position: chr24:43371432-43371192 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 66, 0

Conread position: 259-495
Cow position: chr24:21834775-21835004 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 65, 0

Conread position: 259-498
Cow position: chr24:33372734-33372507 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 24, 13

Conread position: 260-501
Cow position: chr24:15289015-15288776 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 23, 54

Conread position: 261-504
Cow position: chr24:28063137-28062893 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 23, 53

Conread position: 263-469
Cow position: chr24:18302900-18302695 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 20, 57

Conread position: 264-433
Cow position: chr24:24540310-24540474 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 264-464
Cow position: chr24:27940444-27940635 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 61

Conread position: 264-502
Cow position: chr24:37974799-37975033 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 19, 50

Conread position: 264-503
Cow position: chr24:35675714-35675486 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 265-452
Cow position: chr24:24091151-24091342 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 57

Conread position: 265-502
Cow position: chr24:23694729-23694960 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 141, 41

Conread position: 266-492
Cow position: chr24:29984808-29985026 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 48

Conread position: 267-431
Cow position: chr24:6488385-6488227 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 25

Conread position: 267-503
Cow position: chr24:5142119-5141891 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 32

Conread position: 268-503
Cow position: chr24:28303182-28303418 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 57

Conread position: 268-504
Cow position: chr24:28510971-28510743 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 15, 57

Conread position: 269-494
Cow position: chr24:42688020-42687804 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 56

Conread position: 269-496
Cow position: chr24:30236051-30235827 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 14, 94

Conread position: 269-501
Cow position: chr24:18474550-18474780 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 15, 45

Conread position: 269-502
Cow position: chr24:230459-230226 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 14, 56

Conread position: 269-503
Cow position: chr24:27844354-27844581 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 56

Conread position: 269-504
Cow position: chr24:22133345-22133117 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 41

Conread position: 271-503
Cow position: chr24:20807701-20807482 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 43

Conread position: 272-501
Cow position: chr24:37651897-37651674 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 11, 42

Conread position: 274-475
Cow position: chr24:13610475-13610286 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 40

Conread position: 275-496
Cow position: chr24:20364243-20364456 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 8, 45

Conread position: 275-500
Cow position: chr24:13948295-13948073 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 38

Conread position: 275-502
Cow position: chr24:10499391-10499162 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 70

Conread position: 275-502
Cow position: chr24:39523277-39523501 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 35

Conread position: 275-503
Cow position: chr24:27607938-27608151 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 8, 52

Conread position: 277-484
Cow position: chr24:29539759-29539963 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 6, 48

Conread position: 281-482
Cow position: chr24:7757935-7757740 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 281-490
Cow position: chr24:25122503-25122305 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 43, 0

Conread position: 281-502
Cow position: chr24:31812351-31812137 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 32, 0

Conread position: 281-502
Cow position: chr24:37823690-37823474 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 215, 43

Conread position: 281-503
Cow position: chr24:1269943-1269733 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 281-503
Cow position: chr24:2380121-2379899 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 43

Conread position: 281-503
Cow position: chr24:3165985-3165765 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 88, 15

Conread position: 281-503
Cow position: chr24:27713244-27713458 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 281-504
Cow position: chr24:5360877-5360665 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 43, 0

Conread position: 281-504
Cow position: chr24:23666959-23667172 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 283-497
Cow position: chr24:43028164-43028375 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 81, 41

Conread position: 283-501
Cow position: chr24:29561415-29561624 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 283-503
Cow position: chr24:28234205-28233992 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 28, 42

Conread position: 284-500
Cow position: chr24:20874848-20874632 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 133

Conread position: 284-503
Cow position: chr24:41916420-41916200 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 167, 40

Conread position: 286-504
Cow position: chr24:31816736-31816524 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 287-501
Cow position: chr24:27284984-27284770 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 38, 152

Conread position: 287-503
Cow position: chr24:25884988-25885211 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 158

Conread position: 290-503
Cow position: chr24:28496425-28496635 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 35, 53

Conread position: 290-503
Cow position: chr24:30313872-30314079 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 169
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 84, 34

Conread position: 291-502
Cow position: chr24:24490869-24491069 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 306-478
Cow position: chr24:3412826-3412655 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 11, 18

Conread position: 317-503
Cow position: chr24:15373539-15373352 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 35, 26

Conread position: 318-503
Cow position: chr24:30308425-30308606 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 18, 79

Conread position: 321-499
Cow position: chr24:31359448-31359272 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 321-503
Cow position: chr24:17104439-17104624 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 321-503
Cow position: chr24:39791668-39791488 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 37

Conread position: 323-498
Cow position: chr24:18731975-18732150 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 45

Conread position: 323-503
Cow position: chr24:17311096-17311270 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 323-504
Cow position: chr24:11887284-11887106 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 112, 0

Conread position: 323-504
Cow position: chr24:17860134-17860312 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 326-503
Cow position: chr24:2402246-2402421 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 326-503
Cow position: chr24:18356928-18357105 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 327-501
Cow position: chr24:34742880-34742701 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 333-502
Cow position: chr24:42981646-42981811 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 335-501
Cow position: chr24:31159730-31159568 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 343-503
Cow position: chr24:201529-201690 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 344-503
Cow position: chr24:17375743-17375585 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 348-501
Cow position: chr24:27748743-27748589 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 348-503
Cow position: chr24:31757641-31757785 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 348-503
Cow position: chr24:33221830-33221993 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 349-502
Cow position: chr24:5754936-5754784 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 352-501
Cow position: chr24:33244494-33244345 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 127

Conread position: 352-502
Cow position: chr24:15246545-15246695 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 352-503
Cow position: chr24:28344488-28344332 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 15

Conread position: 352-503
Cow position: chr24:37038000-37037847 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 354-502
Cow position: chr24:29063563-29063709 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 355-497
Cow position: chr24:28689763-28689620 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 140

Conread position: 361-492
Cow position: chr24:28319120-28319251 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 361-502
Cow position: chr24:27290960-27290819 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 361-503
Cow position: chr24:28043064-28042922 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 361-503
Cow position: chr24:33153865-33153724 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 362-503
Cow position: chr24:27824550-27824409 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 364-504
Cow position: chr24:175409-175546 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 367-500
Cow position: chr24:23186836-23186969 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 367-501
Cow position: chr24:32095390-32095262 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 370-494
Cow position: chr24:43967424-43967543 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 370-503
Cow position: chr24:30897458-30897589 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 370-504
Cow position: chr24:6723848-6723713 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 370-504
Cow position: chr24:40983210-40983077 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 372-503
Cow position: chr24:27740273-27740142 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.