Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011E05.5 |
| Conread position: | 247-503 |
| Cow position: | chr26:20824876-20825127 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 252-502 |
| Cow position: | chr26:32897642-32897880 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 28, 70 |
| Conread position: | 254-502 |
| Cow position: | chr26:9492153-9491915 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 258-499 |
| Cow position: | chr26:18825053-18825294 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 258-503 |
| Cow position: | chr26:19636520-19636280 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 264-502 |
| Cow position: | chr26:28423505-28423276 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 264-503 |
| Cow position: | chr26:16784048-16783812 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 182, 56 |
| Conread position: | 264-503 |
| Cow position: | chr26:22892225-22892457 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 265-500 |
| Cow position: | chr26:5666263-5666039 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 265-503 |
| Cow position: | chr26:5836595-5836832 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 98, 59 |
| Conread position: | 265-503 |
| Cow position: | chr26:20291469-20291703 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 266-476 |
| Cow position: | chr26:13862816-13863019 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 266-503 |
| Cow position: | chr26:26887912-26888145 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 267-503 |
| Cow position: | chr26:9535735-9535506 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 267-503 |
| Cow position: | chr26:33201849-33202082 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 269-500 |
| Cow position: | chr26:12144897-12145127 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 271-467 |
| Cow position: | chr26:33038008-33038199 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 271-503 |
| Cow position: | chr26:32566227-32566000 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 272-426 |
| Cow position: | chr26:12891755-12891906 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 272-489 |
| Cow position: | chr26:31888945-31888735 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 273-503 |
| Cow position: | chr26:34559956-34560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 275-440 |
| Cow position: | chr26:21320159-21319997 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 275-488 |
| Cow position: | chr26:25197088-25197313 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 275-499 |
| Cow position: | chr26:4854757-4854537 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 275-499 |
| Cow position: | chr26:23925056-23924842 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 275-500 |
| Cow position: | chr26:647509-647732 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 275-501 |
| Cow position: | chr26:19591692-19591473 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 278-489 |
| Cow position: | chr26:33112176-33112382 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 278-503 |
| Cow position: | chr26:12940617-12940388 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 280-503 |
| Cow position: | chr26:34610979-34611193 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 281-451 |
| Cow position: | chr26:13705562-13705737 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 281-471 |
| Cow position: | chr26:15132847-15132657 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 281-482 |
| Cow position: | chr26:32517261-32517447 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 281-501 |
| Cow position: | chr26:31137259-31137474 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 281-503 |
| Cow position: | chr26:28251360-28251141 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 281-504 |
| Cow position: | chr26:7687036-7687258 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 88, 66 |
| Conread position: | 282-503 |
| Cow position: | chr26:29889309-29889523 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 283-503 |
| Cow position: | chr26:20770055-20769839 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 286-503 |
| Cow position: | chr26:19446339-19446122 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 142 |
| Conread position: | 286-504 |
| Cow position: | chr26:13802310-13802100 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 166, 38 |
| Conread position: | 287-503 |
| Cow position: | chr26:27491295-27491510 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 150 |
| Conread position: | 291-503 |
| Cow position: | chr26:24240880-24240668 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 302-503 |
| Cow position: | chr26:33392587-33392383 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 189 |
| Conread position: | 302-504 |
| Cow position: | chr26:22152409-22152214 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 307-501 |
| Cow position: | chr26:26329092-26328903 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 317-501 |
| Cow position: | chr26:32863494-32863676 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 319-502 |
| Cow position: | chr26:34154305-34154123 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 321-503 |
| Cow position: | chr26:11875051-11875232 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 323-444 |
| Cow position: | chr26:29897355-29897234 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-502 |
| Cow position: | chr26:33736387-33736565 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 326-504 |
| Cow position: | chr26:34724709-34724884 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 331-500 |
| Cow position: | chr26:7314781-7314613 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 343-499 |
| Cow position: | chr26:7212436-7212594 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 343-502 |
| Cow position: | chr26:12964549-12964705 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 343-503 |
| Cow position: | chr26:14175429-14175270 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 343-503 |
| Cow position: | chr26:33242037-33241877 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 343-504 |
| Cow position: | chr26:31605554-31605395 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 344-500 |
| Cow position: | chr26:13292668-13292510 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 344-503 |
| Cow position: | chr26:19110331-19110172 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-503 |
| Cow position: | chr26:677837-677992 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-503 |
| Cow position: | chr26:6337930-6337781 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 352-503 |
| Cow position: | chr26:21636902-21637049 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 352-504 |
| Cow position: | chr26:26537382-26537537 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 352-504 |
| Cow position: | chr26:35704523-35704375 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 355-496 |
| Cow position: | chr26:13021009-13021150 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 355-499 |
| Cow position: | chr26:18740921-18741065 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-498 |
| Cow position: | chr26:32362106-32361964 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 367-501 |
| Cow position: | chr26:107150-107015 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 367-504 |
| Cow position: | chr26:8699923-8700060 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 370-501 |
| Cow position: | chr26:17652081-17651950 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 370-502 |
| Cow position: | chr26:14481433-14481564 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 370-503 |
| Cow position: | chr26:34847865-34847732 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.