Cow genome map

Conread name: Ss1.1-Pig3-SRG8012F10.3

Conread position: 1-129
Cow position: chr16:23881040-23881163 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 1-130
Cow position: chr16:35476965-35477089 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 1-139
Cow position: chr16:46184333-46184195 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-143
Cow position: chr16:3938839-3938977 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 1-143
Cow position: chr16:5396643-5396783 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 1-144
Cow position: chr16:48130223-48130362 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 1-145
Cow position: chr16:31011501-31011359 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 1-146
Cow position: chr16:8953501-8953652 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 47, 122

Conread position: 1-146
Cow position: chr16:29038090-29037946 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 1-146
Cow position: chr16:33629593-33629454 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 133, 18

Conread position: 1-146
Cow position: chr16:41696180-41696039 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 1-147
Cow position: chr16:17617187-17617333 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-147
Cow position: chr16:21442435-21442581 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 62, 101

Conread position: 1-147
Cow position: chr16:29060557-29060407 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 1-147
Cow position: chr16:34153396-34153541 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 1-148
Cow position: chr16:4616511-4616654 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 1-157
Cow position: chr16:32969909-32970060 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 1-160
Cow position: chr16:51143972-51143816 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 1-163
Cow position: chr16:7928209-7928371 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-163
Cow position: chr16:33290560-33290398 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr16:10249643-10249806 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr16:24674499-24674665 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 1-167
Cow position: chr16:7912301-7912139 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 1-167
Cow position: chr16:48956971-48956808 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 44, 0

Conread position: 1-172
Cow position: chr16:39385662-39385496 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 1-172
Cow position: chr16:53451877-53451710 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 44, 0

Conread position: 1-178
Cow position: chr16:16025617-16025435 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 149
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 45, 0

Conread position: 1-183
Cow position: chr16:14106817-14106636 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 110

Conread position: 1-184
Cow position: chr16:7136173-7136352 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 91, 60

Conread position: 1-184
Cow position: chr16:11134812-11134988 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 1-184
Cow position: chr16:12324627-12324448 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 1-186
Cow position: chr16:13306698-13306881 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 1-188
Cow position: chr16:12320396-12320210 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 60, 0

Conread position: 1-188
Cow position: chr16:15945079-15945267 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 79, 60

Conread position: 1-189
Cow position: chr16:4856926-4857111 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 135, 0

Conread position: 1-189
Cow position: chr16:7505252-7505077 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 1-189
Cow position: chr16:7723872-7723689 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 1-189
Cow position: chr16:8738240-8738053 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 69, 0

Conread position: 1-189
Cow position: chr16:13689836-13689654 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 1-189
Cow position: chr16:14242541-14242359 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 1-189
Cow position: chr16:15824268-15824456 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 61

Conread position: 1-189
Cow position: chr16:17134888-17135072 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 1-189
Cow position: chr16:17460350-17460155 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 1-189
Cow position: chr16:19052806-19052622 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 69, 18

Conread position: 1-189
Cow position: chr16:19644059-19643876 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 145, 37

Conread position: 1-189
Cow position: chr16:25170566-25170381 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 1-189
Cow position: chr16:25839784-25839608 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 1-189
Cow position: chr16:27701090-27701271 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 1-189
Cow position: chr16:32893792-32893616 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 1-189
Cow position: chr16:33704975-33704795 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 1-189
Cow position: chr16:34753780-34753972 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 1-189
Cow position: chr16:39473983-39474165 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 178, 45

Conread position: 1-189
Cow position: chr16:41752408-41752586 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 54

Conread position: 1-189
Cow position: chr16:42977647-42977452 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 83

Conread position: 1-189
Cow position: chr16:45122215-45122022 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 1-189
Cow position: chr16:45139837-45139659 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 1-189
Cow position: chr16:48095596-48095778 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 179, 53

Conread position: 1-189
Cow position: chr16:49126017-49126199 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 46

Conread position: 1-189
Cow position: chr16:51598440-51598624 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 25, 45

Conread position: 1-189
Cow position: chr16:52170226-52170043 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 1-189
Cow position: chr16:56243715-56243897 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 1-190
Cow position: chr16:7665813-7665624 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 129
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-190
Cow position: chr16:9959002-9958816 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 1-190
Cow position: chr16:14376954-14376769 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 1-190
Cow position: chr16:16597732-16597544 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 1-190
Cow position: chr16:23681534-23681354 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 1-190
Cow position: chr16:51501101-51500919 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 154, 57

Conread position: 1-197
Cow position: chr16:45294719-45294521 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 79, 29

Conread position: 1-197
Cow position: chr16:55233851-55233663 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 180, 44

Conread position: 1-204
Cow position: chr16:9905269-9905063 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 1-204
Cow position: chr16:46433151-46433354 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 58

Conread position: 1-219
Cow position: chr16:32781545-32781326 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 43, 141

Conread position: 1-222
Cow position: chr16:47820747-47820523 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 30, 146

Conread position: 1-226
Cow position: chr16:31149548-31149318 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 168, 53

Conread position: 1-226
Cow position: chr16:33646188-33645968 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 58, 0

Conread position: 1-232
Cow position: chr16:31484493-31484711 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 185
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 92, 53

Conread position: 1-237
Cow position: chr16:935284-935529 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 93, 53

Conread position: 1-237
Cow position: chr16:11660297-11660529 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 170, 44

Conread position: 1-237
Cow position: chr16:42078675-42078923 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 149, 44

Conread position: 1-237
Cow position: chr16:56627104-56626872 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 185, 54

Conread position: 1-239
Cow position: chr16:51578276-51578502 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 185, 36

Conread position: 1-251
Cow position: chr16:23034002-23033749 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 170, 41

Conread position: 1-256
Cow position: chr16:30908776-30909027 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 179, 55

Conread position: 1-256
Cow position: chr16:48613305-48613558 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 190, 56

Conread position: 1-262
Cow position: chr16:38708663-38708940 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 125, 45

Conread position: 2-140
Cow position: chr16:12111796-12111929 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 2-143
Cow position: chr16:49733973-49734112 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 2-147
Cow position: chr16:9097198-9097053 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-188
Cow position: chr16:12220858-12220669 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 2-189
Cow position: chr16:47964649-47964831 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 21, 55

Conread position: 3-132
Cow position: chr16:33458750-33458625 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 3-133
Cow position: chr16:41653143-41653019 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 3-140
Cow position: chr16:23515595-23515729 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 3-146
Cow position: chr16:19496846-19496988 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 103, 42

Conread position: 3-147
Cow position: chr16:17143109-17142964 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 3-162
Cow position: chr16:45826550-45826703 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 118, 40

Conread position: 3-184
Cow position: chr16:20824648-20824470 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 3-184
Cow position: chr16:31117447-31117621 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 3-189
Cow position: chr16:11584236-11584417 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 3-189
Cow position: chr16:26649461-26649641 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 3-189
Cow position: chr16:31561925-31561743 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 3-189
Cow position: chr16:54579336-54579155 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 3-190
Cow position: chr16:820422-820237 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 84, 54

Conread position: 3-190
Cow position: chr16:7076091-7075902 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 48, 138

Conread position: 3-190
Cow position: chr16:11957407-11957591 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 3-197
Cow position: chr16:40333164-40333345 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 182, 42

Conread position: 3-222
Cow position: chr16:12010269-12010050 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 3-222
Cow position: chr16:41578397-41578182 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 0

Conread position: 3-237
Cow position: chr16:17736399-17736176 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 178, 43

Conread position: 4-146
Cow position: chr16:15905073-15905219 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 4-148
Cow position: chr16:19478595-19478736 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 4-184
Cow position: chr16:1582756-1582933 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 4-189
Cow position: chr16:7626324-7626147 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 4-189
Cow position: chr16:29026386-29026196 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 138

Conread position: 4-189
Cow position: chr16:31078930-31079103 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 152, 42

Conread position: 4-189
Cow position: chr16:33198260-33198450 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 55, 156

Conread position: 4-190
Cow position: chr16:23955658-23955845 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 35

Conread position: 4-194
Cow position: chr16:8461909-8462094 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 15, 110

Conread position: 4-237
Cow position: chr16:45676701-45676935 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 130, 55

Conread position: 4-248
Cow position: chr16:24142779-24143031 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 7, 142

Conread position: 5-183
Cow position: chr16:45813529-45813702 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 5-189
Cow position: chr16:8239692-8239878 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 100

Conread position: 6-184
Cow position: chr16:30305647-30305819 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 6-189
Cow position: chr16:9553222-9553047 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 6-189
Cow position: chr16:21370017-21370199 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 53, 138

Conread position: 6-189
Cow position: chr16:44584272-44584447 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 40

Conread position: 6-224
Cow position: chr16:4059534-4059309 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 96

Conread position: 7-147
Cow position: chr16:30897829-30897969 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 7-189
Cow position: chr16:11615076-11615257 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 7-237
Cow position: chr16:56358116-56358350 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 158, 38

Conread position: 8-189
Cow position: chr16:33226372-33226550 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 8-190
Cow position: chr16:48006328-48006506 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 9-183
Cow position: chr16:34204900-34205070 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 12-188
Cow position: chr16:7418538-7418367 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 145, 34

Conread position: 12-189
Cow position: chr16:33054312-33054494 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 41, 18

Conread position: 16-189
Cow position: chr16:45678136-45677966 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 16-189
Cow position: chr16:54679821-54679656 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 169, 28

Conread position: 22-144
Cow position: chr16:25657260-25657135 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 25, 8

Conread position: 35-190
Cow position: chr16:45785877-45785724 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 40-189
Cow position: chr16:496241-496388 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 40-189
Cow position: chr16:3114676-3114526 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 145, 0

Conread position: 40-196
Cow position: chr16:39172011-39172166 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 31

Conread position: 40-222
Cow position: chr16:17945658-17945476 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 45-189
Cow position: chr16:19003402-19003545 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 46-189
Cow position: chr16:17291892-17292034 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 46-189
Cow position: chr16:33235033-33235173 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 46-189
Cow position: chr16:40562360-40562220 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 59-223
Cow position: chr16:12133978-12133815 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 140, 0

Conread position: 61-188
Cow position: chr16:32807177-32807302 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 61-221
Cow position: chr16:21761854-21762014 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 147, 123

Conread position: 62-189
Cow position: chr16:5257111-5256984 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 63-184
Cow position: chr16:20069946-20069825 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 92, 84

Conread position: 63-193
Cow position: chr16:34220300-34220169 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 98

Conread position: 63-222
Cow position: chr16:48494440-48494599 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 63-251
Cow position: chr16:39616836-39616639 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 77

Conread position: 69-238
Cow position: chr16:41696984-41697169 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 210-339
Cow position: chr16:45609827-45609698 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 46

Conread position: 236-339
Cow position: chr16:39616556-39616456 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 236-340
Cow position: chr16:33198651-33198754 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 17

Conread position: 244-337
Cow position: chr16:16177627-16177530 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 244-339
Cow position: chr16:5292780-5292684 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 87
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 43

Conread position: 244-339
Cow position: chr16:19643702-19643607 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 244-339
Cow position: chr16:24825879-24825779 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 244-339
Cow position: chr16:34210608-34210701 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 247-339
Cow position: chr16:30027670-30027580 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 83
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 252-335
Cow position: chr16:31122451-31122534 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 74
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 252-338
Cow position: chr16:4972226-4972312 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 252-339
Cow position: chr16:33226733-33226820 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 253-338
Cow position: chr16:56150111-56150026 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 79
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 254-335
Cow position: chr16:51578623-51578703 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 74
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 254-337
Cow position: chr16:18036763-18036680 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 75
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-338
Cow position: chr16:38903637-38903721 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 76
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:3333223-3333137 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 81
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 31

Conread position: 254-339
Cow position: chr16:5293459-5293375 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 79
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 254-339
Cow position: chr16:8796430-8796517 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 254-339
Cow position: chr16:24143164-24143249 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:24228553-24228638 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:29066965-29066880 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:30290113-30290028 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:31978391-31978476 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:33299188-33299105 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 78
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 254-339
Cow position: chr16:33645811-33645726 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 79
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:33777616-33777531 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:39279281-39279366 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:42970134-42970219 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 78
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:43275819-43275734 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:49126387-49126471 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 81
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 254-339
Cow position: chr16:49141761-49141846 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr16:51869435-51869350 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-340
Cow position: chr16:9973705-9973791 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-340
Cow position: chr16:29766140-29766055 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 78
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 254-346
Cow position: chr16:820048-819956 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 82
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 254-373
Cow position: chr16:8807293-8807414 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 256-334
Cow position: chr16:34168390-34168312 (view UCSC Genome Browser custom track)
Alignm length: 79
Alignm identity: 73
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 256-339
Cow position: chr16:14721948-14722030 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 75
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 256-339
Cow position: chr16:22319931-22320014 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 76
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 256-340
Cow position: chr16:13579048-13579132 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 75
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 256-373
Cow position: chr16:8076870-8076989 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 259-339
Cow position: chr16:7549555-7549475 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 73
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 259-345
Cow position: chr16:22717391-22717305 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 79
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 80

Show alignments to all cow chromosomes.