Cow genome map

Conread name: Ss1.1-Pig3-SRG8012F10.3

Conread position: 1-127
Cow position: chr24:6488353-6488233 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 1-130
Cow position: chr24:27219940-27220068 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 1-134
Cow position: chr24:24540344-24540473 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 57

Conread position: 1-143
Cow position: chr24:21656558-21656415 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 45

Conread position: 1-146
Cow position: chr24:28255915-28256053 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 1-147
Cow position: chr24:34772154-34772308 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-148
Cow position: chr24:24091186-24091336 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 1-180
Cow position: chr24:37650823-37650646 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 99

Conread position: 1-183
Cow position: chr24:27713262-27713436 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 1-184
Cow position: chr24:5360859-5360687 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 1-184
Cow position: chr24:7757917-7757740 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 1-184
Cow position: chr24:37823672-37823495 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 1-184
Cow position: chr24:42687989-42687816 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-189
Cow position: chr24:230428-230241 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 149, 38

Conread position: 1-189
Cow position: chr24:2402229-2402405 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 1-189
Cow position: chr24:3165968-3165781 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 69, 44

Conread position: 1-189
Cow position: chr24:13948270-13948086 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 58, 15

Conread position: 1-189
Cow position: chr24:15288975-15288790 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 1-189
Cow position: chr24:20364268-20364447 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 1-189
Cow position: chr24:25122485-25122307 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 1-189
Cow position: chr24:27284972-27284784 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 141

Conread position: 1-189
Cow position: chr24:27844385-27844565 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 1-189
Cow position: chr24:28063098-28062912 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 15, 61

Conread position: 1-189
Cow position: chr24:30236020-30235835 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 184, 58

Conread position: 1-189
Cow position: chr24:30313881-30314063 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 1-189
Cow position: chr24:33372694-33372518 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 1-189
Cow position: chr24:40301308-40301123 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 1-189
Cow position: chr24:43028180-43028365 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 60, 0

Conread position: 1-195
Cow position: chr24:28990710-28990517 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 179, 73

Conread position: 1-197
Cow position: chr24:37974835-37975026 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 10, 56

Conread position: 1-211
Cow position: chr24:24490877-24491076 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 1-237
Cow position: chr24:26880903-26880659 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 87

Conread position: 1-237
Cow position: chr24:29539782-29540014 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 1-239
Cow position: chr24:28496434-28496671 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 208, 57

Conread position: 1-256
Cow position: chr24:1269925-1269666 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 142, 45

Conread position: 1-259
Cow position: chr24:19187080-19186827 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 148, 53

Conread position: 2-162
Cow position: chr24:358517-358356 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 128

Conread position: 2-178
Cow position: chr24:10499365-10499188 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 130

Conread position: 2-189
Cow position: chr24:29984843-29985022 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 183, 43

Conread position: 2-189
Cow position: chr24:41916404-41916216 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 144, 43

Conread position: 3-141
Cow position: chr24:2992734-2992870 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 3-147
Cow position: chr24:32890901-32891039 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 3-188
Cow position: chr24:2380101-2379916 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 68, 55

Conread position: 3-189
Cow position: chr24:17860116-17860296 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 177, 51

Conread position: 3-189
Cow position: chr24:18474583-18474766 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 3-189
Cow position: chr24:21834817-21834996 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 3-189
Cow position: chr24:28234187-28234008 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 8, 35

Conread position: 3-190
Cow position: chr24:39523304-39523487 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 3-190
Cow position: chr24:39910885-39911072 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 74

Conread position: 4-145
Cow position: chr24:42146350-42146217 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 4-147
Cow position: chr24:43358841-43358703 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 4-189
Cow position: chr24:5142086-5141906 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 151
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 34, 52

Conread position: 4-189
Cow position: chr24:18356908-18357089 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 4-190
Cow position: chr24:19535108-19535294 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 73

Conread position: 4-222
Cow position: chr24:17104424-17104640 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 4-234
Cow position: chr24:42226412-42226193 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 223, 50

Conread position: 5-143
Cow position: chr24:22129495-22129629 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 115
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 5-190
Cow position: chr24:6912214-6912402 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 50, 11

Conread position: 6-143
Cow position: chr24:17073120-17073249 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 6-189
Cow position: chr24:17311081-17311254 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 6-189
Cow position: chr24:22133310-22133134 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 6-189
Cow position: chr24:31816720-31816541 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 6-231
Cow position: chr24:23694766-23694996 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 105, 38

Conread position: 7-180
Cow position: chr24:31359460-31359293 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 8-180
Cow position: chr24:3412822-3412655 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 8-184
Cow position: chr24:18731962-18732134 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 147, 38

Conread position: 8-190
Cow position: chr24:37651861-37651687 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 8-194
Cow position: chr24:27349031-27349217 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 136

Conread position: 9-189
Cow position: chr24:29561438-29561610 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 9-195
Cow position: chr24:11887296-11887117 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 11-188
Cow position: chr24:43598734-43598909 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 124, 35

Conread position: 16-184
Cow position: chr24:27725878-27726044 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 16-222
Cow position: chr24:30897404-30897606 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 19-141
Cow position: chr24:34768437-34768557 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 20-146
Cow position: chr24:15340325-15340449 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 118, 39

Conread position: 23-218
Cow position: chr24:17375766-17375561 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 163, 38

Conread position: 40-189
Cow position: chr24:39791650-39791504 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 41-188
Cow position: chr24:33221823-33221976 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 67, 18

Conread position: 47-184
Cow position: chr24:42981657-42981791 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 48-237
Cow position: chr24:42380635-42380818 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 49-184
Cow position: chr24:5754936-5754804 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 49-189
Cow position: chr24:28043078-28042938 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 61-189
Cow position: chr24:28319118-28319246 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 61-189
Cow position: chr24:29063567-29063694 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 76

Conread position: 62-222
Cow position: chr24:33153866-33153708 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 64-217
Cow position: chr24:27824550-27824397 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 214-329
Cow position: chr24:28690516-28690398 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 32

Conread position: 241-339
Cow position: chr24:39219063-39219158 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 252-339
Cow position: chr24:20225512-20225425 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 81
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 254-338
Cow position: chr24:18266399-18266483 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 76
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:3493665-3493581 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 254-339
Cow position: chr24:3631290-3631205 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:5754614-5754529 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:17311436-17311521 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:19658321-19658235 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 254-339
Cow position: chr24:20024380-20024295 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 78
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:27341251-27341336 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:27844747-27844832 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:28662795-28662880 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:33238775-33238861 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 254-339
Cow position: chr24:38655319-38655404 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 254-339
Cow position: chr24:40908789-40908704 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 255-339
Cow position: chr24:29180672-29180589 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 80
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 256-339
Cow position: chr24:32054443-32054359 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 76
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 256-339
Cow position: chr24:33153553-33153473 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 0

Show alignments to all cow chromosomes.