Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8012F10.3
        

               Conread position:
               1-139
               

               Cow position:
               chr4:12908533-12908403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               1-139
               

               Cow position:
               chr4:19463712-19463574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               63, 84
               

               Conread position:
               1-140
               

               Cow position:
               chr4:36070866-36070731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               69, 45
               

               Conread position:
               1-144
               

               Cow position:
               chr4:28660382-28660526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               1-144
               

               Cow position:
               chr4:56395680-56395537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-147
               

               Cow position:
               chr4:5132510-5132355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               56, 111
               

               Conread position:
               1-147
               

               Cow position:
               chr4:19580584-19580733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               56, 82
               

               Conread position:
               1-148
               

               Cow position:
               chr4:17051120-17051265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-148
               

               Cow position:
               chr4:22215349-22215490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1-148
               

               Cow position:
               chr4:49158628-49158773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               1-149
               

               Cow position:
               chr4:42608903-42608758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               140, 58
               

               Conread position:
               1-154
               

               Cow position:
               chr4:62794192-62794349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-158
               

               Cow position:
               chr4:3519583-3519430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               149, 55
               

               Conread position:
               1-163
               

               Cow position:
               chr4:51083176-51083332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               10, 55
               

               Conread position:
               1-166
               

               Cow position:
               chr4:50494943-50494774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1-167
               

               Cow position:
               chr4:61887804-61887638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               154, 142
               

               Conread position:
               1-172
               

               Cow position:
               chr4:561795-561629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-172
               

               Cow position:
               chr4:37991753-37991589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1-174
               

               Cow position:
               chr4:28854111-28854275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1-182
               

               Cow position:
               chr4:13995552-13995374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               70, 84
               

               Conread position:
               1-183
               

               Cow position:
               chr4:34022422-34022599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               154, 37
               

               Conread position:
               1-184
               

               Cow position:
               chr4:3688093-3687907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               111, 57
               

               Conread position:
               1-184
               

               Cow position:
               chr4:13344700-13344523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr4:19496664-19496479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr4:21161269-21161090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr4:34983339-34983511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr4:45775166-45775353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr4:51728238-51728062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               149, 45
               

               Conread position:
               1-185
               

               Cow position:
               chr4:66172631-66172813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               115, 36
               

               Conread position:
               1-186
               

               Cow position:
               chr4:19102712-19102899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1-186
               

               Cow position:
               chr4:48381554-48381363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 142
               

               Conread position:
               1-188
               

               Cow position:
               chr4:85858-85675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               92, 44
               

               Conread position:
               1-188
               

               Cow position:
               chr4:19097455-19097269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               1-188
               

               Cow position:
               chr4:19407827-19408017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               38, 25
               

               Conread position:
               1-189
               

               Cow position:
               chr4:3421788-3421602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:4318990-4319172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               85, 41
               

               Conread position:
               1-189
               

               Cow position:
               chr4:8182469-8182660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               10, 61
               

               Conread position:
               1-189
               

               Cow position:
               chr4:10915668-10915861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               51, 21
               

               Conread position:
               1-189
               

               Cow position:
               chr4:13241803-13241605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 116
               

               Conread position:
               1-189
               

               Cow position:
               chr4:18098897-18099083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               183, 57
               

               Conread position:
               1-189
               

               Cow position:
               chr4:19119183-19118997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:19539067-19539258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:20026941-20027123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:23846890-23847069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:26659464-26659279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               116, 45
               

               Conread position:
               1-189
               

               Cow position:
               chr4:33838639-33838820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:33970740-33970923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               159, 38
               

               Conread position:
               1-189
               

               Cow position:
               chr4:36290786-36290604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:37915174-37915355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:38156929-38157108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:38209811-38209996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               179, 57
               

               Conread position:
               1-189
               

               Cow position:
               chr4:47731028-47730838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               84, 57
               

               Conread position:
               1-189
               

               Cow position:
               chr4:48486160-48485974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               149, 57
               

               Conread position:
               1-189
               

               Cow position:
               chr4:52831851-52832036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:60527345-60527160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:62472240-62472058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               179, 25
               

               Conread position:
               1-189
               

               Cow position:
               chr4:68387952-68387773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               1-189
               

               Cow position:
               chr4:68590933-68590757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               1-190
               

               Cow position:
               chr4:11969618-11969435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               1-190
               

               Cow position:
               chr4:20147349-20147162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               62, 44
               

               Conread position:
               1-190
               

               Cow position:
               chr4:34631071-34630877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               1-190
               

               Cow position:
               chr4:44772875-44773064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-196
               

               Cow position:
               chr4:69290577-69290771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               177, 36
               

               Conread position:
               1-197
               

               Cow position:
               chr4:22009898-22010083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               1-208
               

               Cow position:
               chr4:48423032-48422838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               1-222
               

               Cow position:
               chr4:13693512-13693725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1-222
               

               Cow position:
               chr4:21531476-21531697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               207, 135
               

               Conread position:
               1-222
               

               Cow position:
               chr4:59277310-59277531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               68, 132
               

               Conread position:
               1-234
               

               Cow position:
               chr4:61391070-61391291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               1-237
               

               Cow position:
               chr4:17124145-17124386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               74, 43
               

               Conread position:
               1-256
               

               Cow position:
               chr4:3268206-3268447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               1-256
               

               Cow position:
               chr4:36841427-36841168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               178, 51
               

               Conread position:
               1-256
               

               Cow position:
               chr4:54478750-54479019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               39, 141
               

               Conread position:
               1-339
               

               Cow position:
               chr4:46435498-46435153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 198
               

               Conread position:
               2-141
               

               Cow position:
               chr4:30944117-30943982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               2-151
               

               Cow position:
               chr4:51026514-51026365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               121, 56
               

               Conread position:
               2-184
               

               Cow position:
               chr4:59001975-59002154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               2-186
               

               Cow position:
               chr4:44854124-44854308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-188
               

               Cow position:
               chr4:37313334-37313150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               57, 148
               

               Conread position:
               2-189
               

               Cow position:
               chr4:18952141-18951953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               2-189
               

               Cow position:
               chr4:21874341-21874154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               171, 59
               

               Conread position:
               2-189
               

               Cow position:
               chr4:65919781-65919591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               57, 139
               

               Conread position:
               3-134
               

               Cow position:
               chr4:68777102-68776970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               63, 81
               

               Conread position:
               3-146
               

               Cow position:
               chr4:61524593-61524455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               3-147
               

               Cow position:
               chr4:42373993-42374134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               3-148
               

               Cow position:
               chr4:27657134-27656998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               3-148
               

               Cow position:
               chr4:34919112-34919249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               3-164
               

               Cow position:
               chr4:39010216-39010054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               56, 72
               

               Conread position:
               3-167
               

               Cow position:
               chr4:53380853-53380690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               162, 153
               

               Conread position:
               3-183
               

               Cow position:
               chr4:19435412-19435241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr4:41907420-41907596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               3-185
               

               Cow position:
               chr4:19431528-19431713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               51, 26
               

               Conread position:
               3-189
               

               Cow position:
               chr4:12127477-12127659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr4:31136917-31136736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               3-189
               

               Cow position:
               chr4:34641561-34641746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr4:34653713-34653889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr4:35982160-35981976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               133, 43
               

               Conread position:
               3-189
               

               Cow position:
               chr4:38944096-38944276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr4:42423643-42423825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr4:54927268-54927460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr4:66547601-66547788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               3-190
               

               Cow position:
               chr4:19500926-19501113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               58, 19
               

               Conread position:
               3-190
               

               Cow position:
               chr4:29317904-29318097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               154
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               3-190
               

               Cow position:
               chr4:40414466-40414649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               3-200
               

               Cow position:
               chr4:51851374-51851175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               105, 42
               

               Conread position:
               3-232
               

               Cow position:
               chr4:26901484-26901259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               187, 33
               

               Conread position:
               3-234
               

               Cow position:
               chr4:386232-386454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               181, 65
               

               Conread position:
               3-236
               

               Cow position:
               chr4:65173264-65173037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               3-237
               

               Cow position:
               chr4:19700269-19700016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               37, 140
               

               Conread position:
               3-238
               

               Cow position:
               chr4:24810289-24810532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               8, 53
               

               Conread position:
               4-147
               

               Cow position:
               chr4:61848756-61848897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               4-148
               

               Cow position:
               chr4:4084947-4085090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               7, 56
               

               Conread position:
               4-162
               

               Cow position:
               chr4:47048278-47048124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               4-184
               

               Cow position:
               chr4:56239700-56239875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               4-186
               

               Cow position:
               chr4:46404747-46404922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               153, 54
               

               Conread position:
               4-189
               

               Cow position:
               chr4:10558698-10558516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               4-189
               

               Cow position:
               chr4:17851096-17851273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               4-189
               

               Cow position:
               chr4:19333547-19333366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               4-189
               

               Cow position:
               chr4:38935522-38935339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               4-189
               

               Cow position:
               chr4:48152210-48152391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               4-189
               

               Cow position:
               chr4:60506440-60506256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               60, 147
               

               Conread position:
               4-194
               

               Cow position:
               chr4:69497277-69497091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               4-217
               

               Cow position:
               chr4:22071508-22071724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               160, 56
               

               Conread position:
               4-218
               

               Cow position:
               chr4:39007661-39007451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               176, 41
               

               Conread position:
               4-237
               

               Cow position:
               chr4:11871747-11871998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 225
               

               Conread position:
               4-256
               

               Cow position:
               chr4:19578547-19578288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               124, 18
               

               Conread position:
               5-189
               

               Cow position:
               chr4:7571570-7571392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               163, 40
               

               Conread position:
               5-190
               

               Cow position:
               chr4:1026075-1026255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               5-248
               

               Cow position:
               chr4:49212589-49212817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               234, 20
               

               Conread position:
               6-140
               

               Cow position:
               chr4:12713868-12713998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               6-140
               

               Cow position:
               chr4:12716738-12716867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               6-147
               

               Cow position:
               chr4:508748-508887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               7, 40
               

               Conread position:
               6-151
               

               Cow position:
               chr4:22331284-22331142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               6-170
               

               Cow position:
               chr4:19123031-19122871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               6-172
               

               Cow position:
               chr4:13194121-13193965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               6-189
               

               Cow position:
               chr4:3341116-3340932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               6-190
               

               Cow position:
               chr4:43916449-43916267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               6-190
               

               Cow position:
               chr4:49800855-49800673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               53, 77
               

               Conread position:
               6-233
               

               Cow position:
               chr4:63769994-63769761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               155, 69
               

               Conread position:
               8-189
               

               Cow position:
               chr4:27530274-27530098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               8-190
               

               Cow position:
               chr4:46550549-46550359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               8-222
               

               Cow position:
               chr4:17186192-17186402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               8-256
               

               Cow position:
               chr4:23656135-23655884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               46, 132
               

               Conread position:
               9-133
               

               Cow position:
               chr4:27425865-27425747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               103
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               9-179
               

               Cow position:
               chr4:56307964-56307791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               9-227
               

               Cow position:
               chr4:62920720-62920924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               12-146
               

               Cow position:
               chr4:479640-479769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               12-147
               

               Cow position:
               chr4:22050959-22051094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               12-189
               

               Cow position:
               chr4:16221719-16221897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               13-189
               

               Cow position:
               chr4:63964839-63965008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               16-237
               

               Cow position:
               chr4:69305777-69305561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               101, 30
               

               Conread position:
               16-261
               

               Cow position:
               chr4:23600318-23600058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               170, 52
               

               Conread position:
               18-176
               

               Cow position:
               chr4:54650337-54650492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               136, 39
               

               Conread position:
               29-189
               

               Cow position:
               chr4:21391677-21391831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               80, 18
               

               Conread position:
               31-189
               

               Cow position:
               chr4:53100942-53100780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               33-256
               

               Cow position:
               chr4:10472325-10472108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               90, 35
               

               Conread position:
               35-222
               

               Cow position:
               chr4:48961358-48961538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               37-190
               

               Cow position:
               chr4:44903421-44903273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               39-190
               

               Cow position:
               chr4:54191217-54191069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               40-178
               

               Cow position:
               chr4:32353319-32353457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               40-189
               

               Cow position:
               chr4:19324103-19323953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               40-189
               

               Cow position:
               chr4:58880835-58880981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               40-189
               

               Cow position:
               chr4:65131327-65131473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               40-196
               

               Cow position:
               chr4:7808700-7808539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               41-189
               

               Cow position:
               chr4:60719230-60719080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               8, 31
               

               Conread position:
               41-234
               

               Cow position:
               chr4:49826378-49826187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               45-197
               

               Cow position:
               chr4:11194309-11194159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               46-189
               

               Cow position:
               chr4:9815226-9815367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               47-189
               

               Cow position:
               chr4:54541517-54541659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               133, 14
               

               Conread position:
               49-189
               

               Cow position:
               chr4:10851333-10851470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               51-196
               

               Cow position:
               chr4:34503412-34503266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               99, 22
               

               Conread position:
               63-188
               

               Cow position:
               chr4:17774244-17774369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               63-211
               

               Cow position:
               chr4:20327603-20327751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               70, 111
               

               Conread position:
               75-192
               

               Cow position:
               chr4:61478699-61478582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               92
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               210-339
               

               Cow position:
               chr4:40414799-40414926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               234-346
               

               Cow position:
               chr4:23381998-23382107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               95
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               241-363
               

               Cow position:
               chr4:7258626-7258750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               100, 17
               

               Conread position:
               244-335
               

               Cow position:
               chr4:45662698-45662791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               94
               

               Alignm identity:
               84
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               244-336
               

               Cow position:
               chr4:37704067-37703974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               95
               

               Alignm identity:
               82
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               9, 43
               

               Conread position:
               244-339
               

               Cow position:
               chr4:12591409-12591506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               84
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               244-339
               

               Cow position:
               chr4:30574258-30574161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               83
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               244-339
               

               Cow position:
               chr4:33089947-33090042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               84
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               69, 9
               

               Conread position:
               244-339
               

               Cow position:
               chr4:46069106-46069008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               86
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               244-339
               

               Cow position:
               chr4:46274995-46274898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               83
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               244-349
               

               Cow position:
               chr4:56233489-56233387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               91
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               251-346
               

               Cow position:
               chr4:43866058-43866153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               96
               

               Alignm identity:
               80
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               252-339
               

               Cow position:
               chr4:11872120-11872207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               80
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               252-339
               

               Cow position:
               chr4:22010267-22010353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               78
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               253-339
               

               Cow position:
               chr4:10703894-10703980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               87
               

               Alignm identity:
               78
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               253-339
               

               Cow position:
               chr4:20117058-20117143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               87
               

               Alignm identity:
               79
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               253-343
               

               Cow position:
               chr4:22051678-22051766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               91
               

               Alignm identity:
               81
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               254-333
               

               Cow position:
               chr4:54468505-54468585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               81
               

               Alignm identity:
               75
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               254-338
               

               Cow position:
               chr4:41441355-41441271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               85
               

               Alignm identity:
               76
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-338
               

               Cow position:
               chr4:68362732-68362645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               79
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:480217-480302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               75
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:14470781-14470863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               78
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:17833116-17833200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               77
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:22072883-22072968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               76
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:22906828-22906745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               77
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:23451306-23451391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               77
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:24002179-24002264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               75
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:32260057-32260142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               81
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:37935491-37935576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               75
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:48409766-48409854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               89
               

               Alignm identity:
               79
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:48961700-48961785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               76
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:49409255-49409170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               75
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:51903392-51903307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               80
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:60897483-60897568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               76
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-339
               

               Cow position:
               chr4:68796450-68796365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               75
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-340
               

               Cow position:
               chr4:19307045-19306960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               87
               

               Alignm identity:
               80
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               254-340
               

               Cow position:
               chr4:42672961-42672875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               87
               

               Alignm identity:
               77
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-340
               

               Cow position:
               chr4:44782164-44782078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               87
               

               Alignm identity:
               77
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-340
               

               Cow position:
               chr4:61450558-61450472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               87
               

               Alignm identity:
               77
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-341
               

               Cow position:
               chr4:25806689-25806602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               77
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-341
               

               Cow position:
               chr4:43148193-43148107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               81
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               254-341
               

               Cow position:
               chr4:61304634-61304721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               77
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               254-346
               

               Cow position:
               chr4:21257339-21257432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               94
               

               Alignm identity:
               80
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               254-366
               

               Cow position:
               chr4:17774802-17774914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               91
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               89, 31
               

               Conread position:
               254-373
               

               Cow position:
               chr4:12004013-12003892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               254-374
               

               Cow position:
               chr4:44839095-44839215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               88, 102
               

               Conread position:
               255-339
               

               Cow position:
               chr4:23647054-23647138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               85
               

               Alignm identity:
               75
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               256-338
               

               Cow position:
               chr4:62471856-62471774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               83
               

               Alignm identity:
               74
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               256-339
               

               Cow position:
               chr4:29813743-29813828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               77
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               256-339
               

               Cow position:
               chr4:37915542-37915624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               84
               

               Alignm identity:
               77
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               258-340
               

               Cow position:
               chr4:43370064-43370146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               83
               

               Alignm identity:
               74
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-139
Cow position:	chr4:12908533-12908403 (view UCSC Genome Browser custom track)
Alignm length:	139
Alignm identity:	108
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	53, 0
Conread position:	1-140
Cow position:	chr4:36070866-36070731 (view UCSC Genome Browser custom track)
Alignm length:	141
Alignm identity:	108
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	69, 45
Conread position:	1-144
Cow position:	chr4:28660382-28660526 (view UCSC Genome Browser custom track)
Alignm length:	145
Alignm identity:	111
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	60, 0
Conread position:	1-147
Cow position:	chr4:5132510-5132355 (view UCSC Genome Browser custom track)
Alignm length:	157
Alignm identity:	119
Alignm E-value:	6e-21
Alignm gaps (pig, cow):	56, 111
Conread position:	1-148
Cow position:	chr4:17051120-17051265 (view UCSC Genome Browser custom track)
Alignm length:	148
Alignm identity:	111
Alignm E-value:	8e-24
Alignm gaps (pig, cow):	35, 0
Conread position:	1-149
Cow position:	chr4:42608903-42608758 (view UCSC Genome Browser custom track)
Alignm length:	150
Alignm identity:	120
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	140, 58
Conread position:	1-154
Cow position:	chr4:62794192-62794349 (view UCSC Genome Browser custom track)
Alignm length:	158
Alignm identity:	121
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	35, 0
Conread position:	1-158
Cow position:	chr4:3519583-3519430 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	123
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	149, 55
Conread position:	1-163
Cow position:	chr4:51083176-51083332 (view UCSC Genome Browser custom track)
Alignm length:	164
Alignm identity:	126
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	10, 55
Conread position:	1-166
Cow position:	chr4:50494943-50494774 (view UCSC Genome Browser custom track)
Alignm length:	170
Alignm identity:	130
Alignm E-value:	5e-30
Alignm gaps (pig, cow):	58, 0
Conread position:	1-167
Cow position:	chr4:61887804-61887638 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	130
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	154, 142
Conread position:	1-172
Cow position:	chr4:561795-561629 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	126
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	57, 0
Conread position:	1-174
Cow position:	chr4:28854111-28854275 (view UCSC Genome Browser custom track)
Alignm length:	174
Alignm identity:	135
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	44, 0
Conread position:	1-182
Cow position:	chr4:13995552-13995374 (view UCSC Genome Browser custom track)
Alignm length:	183
Alignm identity:	138
Alignm E-value:	6e-31
Alignm gaps (pig, cow):	70, 84
Conread position:	1-183
Cow position:	chr4:34022422-34022599 (view UCSC Genome Browser custom track)
Alignm length:	184
Alignm identity:	133
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	154, 37
Conread position:	1-184
Cow position:	chr4:3688093-3687907 (view UCSC Genome Browser custom track)
Alignm length:	190
Alignm identity:	137
Alignm E-value:	9e-25
Alignm gaps (pig, cow):	111, 57
Conread position:	1-185
Cow position:	chr4:66172631-66172813 (view UCSC Genome Browser custom track)
Alignm length:	192
Alignm identity:	142
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	115, 36
Conread position:	1-186
Cow position:	chr4:19102712-19102899 (view UCSC Genome Browser custom track)
Alignm length:	188
Alignm identity:	130
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	45, 0
Conread position:	1-188
Cow position:	chr4:85858-85675 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	141
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	92, 44
Conread position:	1-189
Cow position:	chr4:3421788-3421602 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	144
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	57, 0