Cow genome map

Conread name: Ss1.1-Pig3-SRG8012J06.5

Conread position: 1-282
Cow position: chr14:3127591-3127310 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 180
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 130, 126

Conread position: 1-282
Cow position: chr14:3127759-3127478 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 201, 222

Conread position: 1-324
Cow position: chr14:3156161-3156484 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 205
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 307, 302

Conread position: 1-343
Cow position: chr14:25784363-25784705 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 224
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 213, 209

Conread position: 1-354
Cow position: chr14:25794499-25794147 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 223
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 50, 65

Conread position: 1-367
Cow position: chr14:680906-681272 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 227
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 123

Conread position: 1-369
Cow position: chr14:3128179-3127811 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 231
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 31, 38

Conread position: 1-370
Cow position: chr14:25876918-25877287 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 221
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-372
Cow position: chr14:3080079-3079708 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 227
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 202, 222

Conread position: 1-372
Cow position: chr14:3080163-3079792 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 222
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-373
Cow position: chr14:3080247-3079875 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 222
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-373
Cow position: chr14:3080751-3080379 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 224
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 31, 38

Conread position: 1-405
Cow position: chr14:447852-448256 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 240
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 382, 377

Conread position: 1-409
Cow position: chr14:25784279-25784687 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 382

Conread position: 1-416
Cow position: chr14:3101325-3100914 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 261
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 65, 31

Conread position: 1-417
Cow position: chr14:447600-448015 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 250
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 196, 186

Conread position: 1-417
Cow position: chr14:3100992-3100579 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 258
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 105, 136

Conread position: 1-417
Cow position: chr14:25836310-25836725 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 263
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 408, 0

Conread position: 1-418
Cow position: chr14:25783523-25783939 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 170

Conread position: 1-418
Cow position: chr14:25783607-25784023 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 269
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 214, 209

Conread position: 1-418
Cow position: chr14:25783691-25784107 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 209

Conread position: 1-418
Cow position: chr14:25783775-25784191 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-418
Cow position: chr14:25783859-25784275 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 209

Conread position: 1-418
Cow position: chr14:25783943-25784359 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 374

Conread position: 1-418
Cow position: chr14:25784027-25784443 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 170

Conread position: 1-418
Cow position: chr14:25784195-25784611 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 209

Conread position: 1-418
Cow position: chr14:25794583-25794166 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 116, 124

Conread position: 1-418
Cow position: chr14:25794751-25794335 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 124

Conread position: 1-418
Cow position: chr14:25794919-25794503 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 269
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 217, 209

Conread position: 1-418
Cow position: chr14:25795339-25794923 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 258
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 67, 32

Conread position: 1-418
Cow position: chr14:25836478-25836894 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 255
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 123, 115

Conread position: 1-418
Cow position: chr14:25836562-25836978 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 262
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 40, 34

Conread position: 1-418
Cow position: chr14:25836730-25837146 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 255
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 408, 0

Conread position: 1-418
Cow position: chr14:25859363-25859779 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 256
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 217, 222

Conread position: 1-424
Cow position: chr14:3100826-3100403 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 248
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 416, 409

Conread position: 1-424
Cow position: chr14:25836814-25837237 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 251
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-424
Cow position: chr14:25860287-25860710 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 269
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 40, 33

Conread position: 1-429
Cow position: chr14:25795255-25794829 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 266
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 116, 124

Conread position: 2-376
Cow position: chr14:3101407-3101035 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 236
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 216, 75

Conread position: 2-408
Cow position: chr14:25794834-25794428 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-417
Cow position: chr14:3080330-3079916 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 248
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 408, 0

Conread position: 3-418
Cow position: chr14:25783441-25783855 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 207

Conread position: 3-418
Cow position: chr14:25784113-25784527 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 0

Conread position: 3-418
Cow position: chr14:25795421-25795007 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 268
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 163, 168

Conread position: 5-411
Cow position: chr14:3128091-3127685 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 240
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 47, 52

Conread position: 5-418
Cow position: chr14:25859199-25859611 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 253
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 53, 59

Conread position: 6-417
Cow position: chr14:3080830-3080420 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 247
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 71, 57

Conread position: 6-418
Cow position: chr14:25876335-25876746 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 260
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 230, 221

Conread position: 7-281
Cow position: chr14:25784453-25784727 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 7-335
Cow position: chr14:25910932-25911260 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 206
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 7-345
Cow position: chr14:25877512-25877850 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 213
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 123, 112

Conread position: 7-384
Cow position: chr14:25859705-25860082 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 232
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 112

Conread position: 7-404
Cow position: chr14:25794997-25794600 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 261
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 49, 28

Conread position: 7-415
Cow position: chr14:3080913-3080504 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 245
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 124, 120

Conread position: 7-418
Cow position: chr14:25783361-25783771 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 7-418
Cow position: chr14:25795165-25794755 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 255
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 210, 217

Conread position: 7-418
Cow position: chr14:25836232-25836642 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 260
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 403, 0

Conread position: 7-418
Cow position: chr14:25859285-25859695 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 268
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 31

Conread position: 7-418
Cow position: chr14:25859453-25859863 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 242
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 119, 112

Conread position: 7-418
Cow position: chr14:25859537-25859947 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 258
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 35, 28

Conread position: 7-418
Cow position: chr14:25876588-25876998 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 255
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 34, 28

Conread position: 7-424
Cow position: chr14:25877344-25877761 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 269
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 19, 30

Conread position: 16-418
Cow position: chr14:25836409-25836810 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 249
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 394, 0

Conread position: 16-418
Cow position: chr14:25836661-25837062 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 260
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 114, 103

Conread position: 38-418
Cow position: chr14:25836095-25836474 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 236
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 372, 0

Conread position: 46-417
Cow position: chr14:25860248-25860618 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 224
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 79, 73

Conread position: 46-417
Cow position: chr14:25877299-25877669 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 224
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 79, 73

Conread position: 46-418
Cow position: chr14:25783316-25783687 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 245
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 78, 72

Conread position: 53-417
Cow position: chr14:25795035-25794672 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 78, 66

Conread position: 53-418
Cow position: chr14:25860171-25860535 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 238
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 150, 164

Conread position: 54-417
Cow position: chr14:25896018-25896380 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 215
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 356, 0

Conread position: 54-418
Cow position: chr14:25876887-25877250 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 220
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 356, 0

Conread position: 54-418
Cow position: chr14:25895934-25896297 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 229
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 63, 69

Conread position: 55-285
Cow position: chr14:447570-447800 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 150
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 147, 160

Conread position: 55-418
Cow position: chr14:680876-681238 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 231
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 140, 168

Conread position: 55-418
Cow position: chr14:25876804-25877166 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 233
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 76, 64

Conread position: 59-405
Cow position: chr14:25795449-25795103 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 216
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 155, 150

Conread position: 59-417
Cow position: chr14:3127953-3127596 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 225
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 350, 0

Conread position: 59-417
Cow position: chr14:3155883-3156240 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 215
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 349, 0

Conread position: 59-418
Cow position: chr14:25836200-25836558 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 230
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 136, 163

Conread position: 66-368
Cow position: chr14:3155974-3156276 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 198
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 129, 157

Conread position: 67-368
Cow position: chr14:25859681-25859982 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 184
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 67-411
Cow position: chr14:25877068-25877412 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 211
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 67-417
Cow position: chr14:25876564-25876913 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 218
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 58, 52

Conread position: 67-418
Cow position: chr14:25860017-25860367 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 219
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 54

Conread position: 72-378
Cow position: chr14:3155407-3155713 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 193
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 75-424
Cow position: chr14:25836048-25836397 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 219
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 345, 334

Conread position: 97-418
Cow position: chr14:25835986-25836306 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 205
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 68

Conread position: 143-417
Cow position: chr14:3101434-3101162 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 178
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 243, 102

Conread position: 143-418
Cow position: chr14:25795449-25795175 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 23, 29

Conread position: 145-425
Cow position: chr14:25910737-25911014 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 185
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 71

Conread position: 217-417
Cow position: chr14:3101444-3101246 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 166, 120

Show alignments to all cow chromosomes.