Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8012J06.5 |
| Conread position: | 1-331 |
| Cow position: | chr17:22589503-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 113, 130 |
| Conread position: | 1-343 |
| Cow position: | chr17:22498880-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 116, 127 |
| Conread position: | 1-354 |
| Cow position: | chr17:22551833-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-398 |
| Cow position: | chr17:22553009-22552612 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 1-406 |
| Cow position: | chr17:22589587-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-407 |
| Cow position: | chr17:22499300-22498894 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 360, 368 |
| Conread position: | 1-414 |
| Cow position: | chr17:22452202-22451790 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 1-415 |
| Cow position: | chr17:22452118-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-416 |
| Cow position: | chr17:22552085-22551671 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 1-417 |
| Cow position: | chr17:22451950-22451537 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 162, 170 |
| Conread position: | 1-417 |
| Cow position: | chr17:22498964-22498549 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 1-418 |
| Cow position: | chr17:22473183-22473593 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 1-418 |
| Cow position: | chr17:22473345-22473761 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 1-418 |
| Cow position: | chr17:22473429-22473845 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 363 |
| Conread position: | 1-418 |
| Cow position: | chr17:22499132-22498716 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr17:22499384-22498968 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 369 |
| Conread position: | 1-418 |
| Cow position: | chr17:22551917-22551501 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 1-418 |
| Cow position: | chr17:22552001-22551585 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-418 |
| Cow position: | chr17:22552169-22551753 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 1-418 |
| Cow position: | chr17:22552253-22551837 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 1-418 |
| Cow position: | chr17:22552505-22552089 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 1-418 |
| Cow position: | chr17:22552757-22552341 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 1-418 |
| Cow position: | chr17:22553093-22552677 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 1-418 |
| Cow position: | chr17:22589671-22589255 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 281, 293 |
| Conread position: | 1-418 |
| Cow position: | chr17:22589755-22589339 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 361, 373 |
| Conread position: | 1-418 |
| Cow position: | chr17:22590007-22589591 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 382, 366 |
| Conread position: | 1-418 |
| Cow position: | chr17:22590175-22589759 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 307, 295 |
| Conread position: | 1-438 |
| Cow position: | chr17:22452370-22451935 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 105 |
| Conread position: | 1-869 |
| Cow position: | chr17:22473513-22474401 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 729 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 599, 419 |
| Conread position: | 2-417 |
| Cow position: | chr17:22473262-22473676 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 116 |
| Conread position: | 2-417 |
| Cow position: | chr17:22589838-22589424 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 366 |
| Conread position: | 2-418 |
| Cow position: | chr17:22552420-22552005 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 407, 0 |
| Conread position: | 2-429 |
| Cow position: | chr17:22499215-22498790 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 3-418 |
| Cow position: | chr17:22552671-22552257 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 278, 302 |
| Conread position: | 7-418 |
| Cow position: | chr17:22452280-22451870 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 7-418 |
| Cow position: | chr17:22552331-22551921 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 119 |
| Conread position: | 7-418 |
| Cow position: | chr17:22552919-22552509 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 7-418 |
| Cow position: | chr17:22590253-22589843 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 16-417 |
| Cow position: | chr17:22590076-22589676 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 0 |
| Conread position: | 18-410 |
| Cow position: | chr17:22452522-22452129 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 44-418 |
| Cow position: | chr17:22452411-22452038 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 55-418 |
| Cow position: | chr17:22590289-22589927 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 72-418 |
| Cow position: | chr17:22499397-22499052 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 336, 0 |
| Conread position: | 73-417 |
| Cow position: | chr17:22553105-22552762 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 171-426 |
| Cow position: | chr17:22590257-22590002 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 249, 238 |
| Conread position: | 222-418 |
| Cow position: | chr17:22499415-22499220 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 9 |
Show alignments to all cow chromosomes.