Cow genome map

Conread name: Ss1.1-Pig3-SRG8012J06.5

Conread position: 1-285
Cow position: chr19:14940756-14941040 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 118, 123

Conread position: 1-327
Cow position: chr19:23597377-23597702 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 208
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 276, 288

Conread position: 1-331
Cow position: chr19:23614788-23615118 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 209
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-332
Cow position: chr19:20678383-20678714 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 118

Conread position: 1-339
Cow position: chr19:20678467-20678802 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 41, 34

Conread position: 1-342
Cow position: chr19:14959640-14959300 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 225
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 0

Conread position: 1-344
Cow position: chr19:20635369-20635026 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 40

Conread position: 1-360
Cow position: chr19:20678299-20678658 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 116

Conread position: 1-369
Cow position: chr19:20635285-20634918 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 287

Conread position: 1-373
Cow position: chr19:23649398-23649770 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 243
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 39, 33

Conread position: 1-411
Cow position: chr19:20635453-20635043 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 27

Conread position: 1-414
Cow position: chr19:23613864-23614278 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 126

Conread position: 1-415
Cow position: chr19:14959230-14958823 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 262
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 111, 0

Conread position: 1-415
Cow position: chr19:20677795-20678208 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-415
Cow position: chr19:23614536-23614951 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 266
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 155, 128

Conread position: 1-417
Cow position: chr19:14940252-14940667 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 40

Conread position: 1-417
Cow position: chr19:14940588-14941003 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 363

Conread position: 1-417
Cow position: chr19:14960129-14959715 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 199, 189

Conread position: 1-417
Cow position: chr19:20635537-20635122 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 0

Conread position: 1-417
Cow position: chr19:20677375-20677790 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 260
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 55, 33

Conread position: 1-417
Cow position: chr19:20677459-20677874 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 264
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 93, 97

Conread position: 1-417
Cow position: chr19:20677879-20678294 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 126

Conread position: 1-417
Cow position: chr19:20678215-20678630 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-417
Cow position: chr19:23613528-23613943 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-418
Cow position: chr19:14940336-14940752 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-418
Cow position: chr19:20635621-20635205 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 223

Conread position: 1-418
Cow position: chr19:20677711-20678127 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 207

Conread position: 1-418
Cow position: chr19:20677963-20678379 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 44

Conread position: 1-418
Cow position: chr19:20678047-20678463 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 48

Conread position: 1-418
Cow position: chr19:20678131-20678547 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 368

Conread position: 1-418
Cow position: chr19:23597125-23597541 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 115

Conread position: 1-418
Cow position: chr19:23613360-23613776 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 118

Conread position: 1-418
Cow position: chr19:23613444-23613860 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 34

Conread position: 1-418
Cow position: chr19:23613612-23614028 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-418
Cow position: chr19:23613696-23614112 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 215

Conread position: 1-418
Cow position: chr19:23614116-23614532 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 267
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 143, 118

Conread position: 1-418
Cow position: chr19:23614200-23614616 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 129

Conread position: 1-418
Cow position: chr19:23614368-23614784 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 373

Conread position: 1-418
Cow position: chr19:23614620-23615036 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 262
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 118, 127

Conread position: 1-418
Cow position: chr19:23649818-23650234 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 266
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 18, 38

Conread position: 1-418
Cow position: chr19:23650070-23650486 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 263
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 125, 110

Conread position: 1-418
Cow position: chr19:43570128-43569714 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 0

Conread position: 1-418
Cow position: chr19:43570212-43569796 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 39

Conread position: 1-419
Cow position: chr19:14960295-14959880 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 1-424
Cow position: chr19:23649482-23649905 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 418, 409

Conread position: 1-426
Cow position: chr19:23597209-23597634 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 266
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 419, 409

Conread position: 2-410
Cow position: chr19:14948453-14948046 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 265
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 200, 54

Conread position: 2-418
Cow position: chr19:14915974-14916387 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 262
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 39, 134

Conread position: 2-418
Cow position: chr19:14940421-14940836 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 37

Conread position: 3-418
Cow position: chr19:23597043-23597457 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 0

Conread position: 4-418
Cow position: chr19:14940087-14940500 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 0

Conread position: 5-386
Cow position: chr19:14948367-14947986 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 233
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 5-411
Cow position: chr19:43570366-43569970 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 260
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 122, 88

Conread position: 6-418
Cow position: chr19:23613953-23614364 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 373

Conread position: 7-372
Cow position: chr19:14960205-14959842 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 45

Conread position: 7-404
Cow position: chr19:14940678-14941075 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 357

Conread position: 7-416
Cow position: chr19:23649908-23650316 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 258
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 26, 31

Conread position: 7-418
Cow position: chr19:14940174-14940584 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 117

Conread position: 7-418
Cow position: chr19:14940510-14940920 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 262
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 350, 361

Conread position: 7-418
Cow position: chr19:23613786-23614196 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 34

Conread position: 7-418
Cow position: chr19:23614710-23615118 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 38

Conread position: 7-418
Cow position: chr19:23649740-23650150 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 256
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 201, 191

Conread position: 7-434
Cow position: chr19:14940006-14940431 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 361

Conread position: 10-417
Cow position: chr19:20677303-20677706 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 259
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 107, 58

Conread position: 16-360
Cow position: chr19:20677642-20677986 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 115

Conread position: 16-415
Cow position: chr19:23597308-23597706 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 257
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 340, 356

Conread position: 16-417
Cow position: chr19:23650001-23650401 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 199

Conread position: 16-418
Cow position: chr19:23649665-23650066 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 257
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 394, 0

Conread position: 16-424
Cow position: chr19:23614467-23614875 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 354

Conread position: 23-389
Cow position: chr19:20620553-20620201 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 242
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 20

Conread position: 39-418
Cow position: chr19:20635823-20635457 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 6

Conread position: 47-418
Cow position: chr19:14948492-14948123 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 240
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 247, 90

Conread position: 59-369
Cow position: chr19:43570238-43569928 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 65

Conread position: 59-417
Cow position: chr19:14960405-14960050 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 251, 0

Conread position: 59-418
Cow position: chr19:23614090-23614448 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 244
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 142, 150

Conread position: 60-418
Cow position: chr19:20635646-20635289 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 154

Conread position: 61-418
Cow position: chr19:43570394-43570048 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 107, 0

Conread position: 61-419
Cow position: chr19:14959254-14958903 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 224
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 141, 0

Conread position: 74-418
Cow position: chr19:14939987-14940332 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 338

Conread position: 76-417
Cow position: chr19:23613351-23613691 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 226
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 334, 0

Conread position: 76-424
Cow position: chr19:23649389-23649737 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 220
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 42

Conread position: 77-418
Cow position: chr19:20677619-20677959 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 0

Conread position: 84-418
Cow position: chr19:23597040-23597373 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 217
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 326, 0

Conread position: 96-418
Cow position: chr19:14959712-14959393 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 204
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 61

Conread position: 223-418
Cow position: chr19:14960409-14960215 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 186, 0

Show alignments to all cow chromosomes.