Cow genome map

Conread name: Ss1.1-Pig3-SRG8012J06.5

Conread position: 1-241
Cow position: chr22:12398994-12398754 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 39

Conread position: 1-277
Cow position: chr22:12430890-12430615 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 174
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 39

Conread position: 1-330
Cow position: chr22:12385236-12384907 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 209
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 117, 123

Conread position: 1-332
Cow position: chr22:12475623-12475292 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 126

Conread position: 1-332
Cow position: chr22:12499636-12499967 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 115

Conread position: 1-333
Cow position: chr22:12458094-12457762 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 205
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 200, 208

Conread position: 1-333
Cow position: chr22:14468321-14468653 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 223, 214

Conread position: 1-335
Cow position: chr22:46654527-46654863 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 227
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 121, 116

Conread position: 1-345
Cow position: chr22:12418849-12418505 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 218
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-360
Cow position: chr22:14430244-14430603 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 34, 54

Conread position: 1-360
Cow position: chr22:14468237-14468596 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 31

Conread position: 1-365
Cow position: chr22:12431898-12431534 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 226
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 202, 223

Conread position: 1-367
Cow position: chr22:14429908-14430274 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-368
Cow position: chr22:14468153-14468520 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 114

Conread position: 1-369
Cow position: chr22:14467985-14468353 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 235
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 201, 206

Conread position: 1-414
Cow position: chr22:12385320-12384908 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 266
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 60

Conread position: 1-414
Cow position: chr22:12419017-12418603 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 0

Conread position: 1-414
Cow position: chr22:12544591-12545005 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 252
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 216, 210

Conread position: 1-416
Cow position: chr22:14442138-14442554 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 254
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 285, 306

Conread position: 1-417
Cow position: chr22:11640616-11641031 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 268
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 116, 123

Conread position: 1-417
Cow position: chr22:12399246-12398831 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 32

Conread position: 1-417
Cow position: chr22:12399414-12398999 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-417
Cow position: chr22:12431478-12431063 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 254
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 118, 124

Conread position: 1-417
Cow position: chr22:12431982-12431567 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-417
Cow position: chr22:12432234-12431819 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 260
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 117, 125

Conread position: 1-417
Cow position: chr22:12432318-12431903 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 37, 32

Conread position: 1-417
Cow position: chr22:12458514-12458099 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 264
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 355, 372

Conread position: 1-417
Cow position: chr22:12498964-12499379 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-417
Cow position: chr22:12499216-12499631 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 262
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 409, 0

Conread position: 1-417
Cow position: chr22:12499384-12499799 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-417
Cow position: chr22:14429824-14430239 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 1-417
Cow position: chr22:14430160-14430575 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 264
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 118, 138

Conread position: 1-417
Cow position: chr22:14468069-14468484 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 269
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 301, 286

Conread position: 1-417
Cow position: chr22:46654359-46654774 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 253
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 54

Conread position: 1-418
Cow position: chr22:11640868-11641284 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 275
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 34, 39

Conread position: 1-418
Cow position: chr22:11641036-11641452 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 261
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 413, 0

Conread position: 1-418
Cow position: chr22:12385404-12384988 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 123

Conread position: 1-418
Cow position: chr22:12399750-12399334 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 222

Conread position: 1-418
Cow position: chr22:12431058-12430642 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 268
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 34, 44

Conread position: 1-418
Cow position: chr22:12431226-12430810 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 45

Conread position: 1-418
Cow position: chr22:12431562-12431146 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 124

Conread position: 1-418
Cow position: chr22:12431646-12431230 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 262
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 48

Conread position: 1-418
Cow position: chr22:12458346-12457930 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 264
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 409, 0

Conread position: 1-418
Cow position: chr22:12476211-12475795 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 214

Conread position: 1-418
Cow position: chr22:46654191-46654607 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 54

Conread position: 1-419
Cow position: chr22:11701279-11701698 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 258
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 55, 44

Conread position: 1-421
Cow position: chr22:12385490-12385069 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 132

Conread position: 1-422
Cow position: chr22:12432486-12432065 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 267
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 414, 407

Conread position: 1-424
Cow position: chr22:12458598-12458175 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-424
Cow position: chr22:12476379-12475956 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 271
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 205, 223

Conread position: 1-424
Cow position: chr22:12499048-12499471 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 214

Conread position: 1-424
Cow position: chr22:14429992-14430415 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 119

Conread position: 1-424
Cow position: chr22:14430328-14430751 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 278
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 40, 34

Conread position: 2-364
Cow position: chr22:14430077-14430440 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 236
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 129, 118

Conread position: 2-418
Cow position: chr22:12432401-12431986 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 267
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 120, 115

Conread position: 3-360
Cow position: chr22:14442056-14442413 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 214
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 199, 205

Conread position: 3-369
Cow position: chr22:14429742-14430108 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 242
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 91, 95

Conread position: 3-417
Cow position: chr22:12475705-12475292 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 0

Conread position: 3-418
Cow position: chr22:12431308-12430894 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 268
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 115, 128

Conread position: 3-418
Cow position: chr22:12475873-12475459 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 121

Conread position: 3-418
Cow position: chr22:14430498-14430912 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 122

Conread position: 3-418
Cow position: chr22:46654025-46654439 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 273
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 47, 54

Conread position: 5-417
Cow position: chr22:11701199-11701610 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 249
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 129, 122

Conread position: 5-418
Cow position: chr22:12475955-12475543 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 269
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 198, 219

Conread position: 5-418
Cow position: chr22:12499304-12499716 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 266
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 198, 218

Conread position: 5-450
Cow position: chr22:12458174-12457727 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 285
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 351, 364

Conread position: 7-404
Cow position: chr22:12399156-12398759 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 21

Conread position: 7-417
Cow position: chr22:46654113-46654522 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 267
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 14, 30

Conread position: 7-418
Cow position: chr22:12399492-12399082 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 0

Conread position: 7-418
Cow position: chr22:12399828-12399418 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 261
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 351, 362

Conread position: 7-418
Cow position: chr22:12399906-12399502 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 271
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 385, 26

Conread position: 7-418
Cow position: chr22:12431136-12430726 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 266
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 112, 122

Conread position: 7-418
Cow position: chr22:46654449-46654860 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 260
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 38

Conread position: 7-424
Cow position: chr22:12498886-12499303 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 195, 217

Conread position: 7-432
Cow position: chr22:46654281-46654704 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 268
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 30

Conread position: 16-377
Cow position: chr22:11640799-11641160 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 233
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 103, 108

Conread position: 17-424
Cow position: chr22:11640716-11641123 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 265
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 264, 272

Conread position: 18-417
Cow position: chr22:46653956-46654354 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 251
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 10, 19

Conread position: 36-366
Cow position: chr22:14467935-14468267 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 20, 177

Conread position: 45-417
Cow position: chr22:12475999-12475628 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 240
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 365, 0

Conread position: 59-417
Cow position: chr22:12458624-12458267 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 351, 0

Conread position: 59-417
Cow position: chr22:12499610-12499967 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 309

Conread position: 59-418
Cow position: chr22:12385684-12385324 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 238
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 63, 50

Conread position: 60-356
Cow position: chr22:14430723-14431012 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 191
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 265, 203

Conread position: 60-368
Cow position: chr22:14429715-14430023 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 201
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 62-364
Cow position: chr22:14442283-14442586 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 200
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 55, 67

Conread position: 69-417
Cow position: chr22:14429640-14429987 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 223
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 29

Conread position: 77-416
Cow position: chr22:12432494-12432154 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 333, 0

Conread position: 77-418
Cow position: chr22:12498872-12499212 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 224
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 116, 145

Conread position: 77-434
Cow position: chr22:12476387-12476032 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 229
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 116, 145

Conread position: 79-406
Cow position: chr22:12419023-12418696 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 89-424
Cow position: chr22:12399908-12399579 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 331, 28

Conread position: 120-368
Cow position: chr22:14467935-14468184 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 20, 176

Conread position: 157-418
Cow position: chr22:12432498-12432238 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 172
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 253, 0

Conread position: 157-418
Cow position: chr22:12476391-12476131 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 169
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 204, 212

Conread position: 157-418
Cow position: chr22:12498868-12499128 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 46, 67

Show alignments to all cow chromosomes.