Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8012J06.5 |
| Conread position: | 1-299 |
| Cow position: | chr23:24639814-24640112 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 194, 221 |
| Conread position: | 1-329 |
| Cow position: | chr23:24654127-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 1-336 |
| Cow position: | chr23:24560460-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 124 |
| Conread position: | 1-343 |
| Cow position: | chr23:24654043-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 1-343 |
| Cow position: | chr23:25724033-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 117, 122 |
| Conread position: | 1-346 |
| Cow position: | chr23:24626402-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 0 |
| Conread position: | 1-346 |
| Cow position: | chr23:25698562-25698217 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 121 |
| Conread position: | 1-364 |
| Cow position: | chr23:24535951-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 1-367 |
| Cow position: | chr23:24546984-24546618 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-371 |
| Cow position: | chr23:24522558-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 1-372 |
| Cow position: | chr23:24535783-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 121, 116 |
| Conread position: | 1-406 |
| Cow position: | chr23:25626544-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-408 |
| Cow position: | chr23:25660329-25660736 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-411 |
| Cow position: | chr23:25626040-25626450 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-416 |
| Cow position: | chr23:25660245-25660659 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-417 |
| Cow position: | chr23:24547236-24546821 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-417 |
| Cow position: | chr23:24639310-24639725 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 1-418 |
| Cow position: | chr23:24547152-24546736 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr23:24560544-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr23:24560628-24560212 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 1-418 |
| Cow position: | chr23:24560796-24560380 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr23:25626208-25626621 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 2-411 |
| Cow position: | chr23:24626319-24626728 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 2-417 |
| Cow position: | chr23:24560879-24560465 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 2-418 |
| Cow position: | chr23:24522722-24522310 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 2-418 |
| Cow position: | chr23:24639395-24639810 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 2-434 |
| Cow position: | chr23:25698645-25698213 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 296, 291 |
| Conread position: | 3-411 |
| Cow position: | chr23:24522637-24522232 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 201, 27 |
| Conread position: | 5-345 |
| Cow position: | chr23:24639734-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-417 |
| Cow position: | chr23:24639650-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 405, 0 |
| Conread position: | 5-418 |
| Cow position: | chr23:24536031-24535619 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 5-418 |
| Cow position: | chr23:25660165-25660577 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 5-434 |
| Cow position: | chr23:24639566-24639993 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 275 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 7-397 |
| Cow position: | chr23:25626631-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-399 |
| Cow position: | chr23:25698472-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 7-414 |
| Cow position: | chr23:24560706-24560300 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 0 |
| Conread position: | 7-416 |
| Cow position: | chr23:24639484-24639892 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 117 |
| Conread position: | 7-416 |
| Cow position: | chr23:25626298-25626703 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 135, 145 |
| Conread position: | 7-417 |
| Cow position: | chr23:24547314-24546905 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 11-398 |
| Cow position: | chr23:25724107-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 57-416 |
| Cow position: | chr23:25626433-25626787 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 5 |
| Conread position: | 59-372 |
| Cow position: | chr23:25698672-25698359 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 218, 234 |
| Conread position: | 67-421 |
| Cow position: | chr23:24522823-24522475 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 69-417 |
| Cow position: | chr23:25660145-25660492 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 69-418 |
| Cow position: | chr23:24626302-24626650 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 76-416 |
| Cow position: | chr23:24560889-24560548 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 76-418 |
| Cow position: | chr23:24547329-24546988 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 77-447 |
| Cow position: | chr23:24654034-24654405 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 5, 333 |
| Conread position: | 79-418 |
| Cow position: | chr23:24536041-24535703 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 91-417 |
| Cow position: | chr23:25724111-25723786 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 142-417 |
| Cow position: | chr23:25724144-25723870 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 143-413 |
| Cow position: | chr23:25698672-25698401 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 66 |
| Conread position: | 153-416 |
| Cow position: | chr23:24536051-24535789 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 157-418 |
| Cow position: | chr23:25626028-25626288 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 252, 0 |
Show alignments to all cow chromosomes.