Cow genome map

Conread name: Ss1.1-Pig3-SRG8012J06.5

Conread position: 1-320
Cow position: chr25:23420560-23420879 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-369
Cow position: chr25:34714127-34714495 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 230
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 40

Conread position: 1-369
Cow position: chr25:34769611-34769243 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 62

Conread position: 1-377
Cow position: chr25:34447367-34447741 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 240
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 336, 0

Conread position: 1-404
Cow position: chr25:34447535-34447927 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 260
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 117, 122

Conread position: 1-409
Cow position: chr25:34713875-34714283 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 254
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 32, 41

Conread position: 1-414
Cow position: chr25:34447115-34447527 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 254
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 31, 38

Conread position: 1-414
Cow position: chr25:36800556-36800968 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 408, 0

Conread position: 1-415
Cow position: chr25:33127811-33128224 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 264
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 116, 121

Conread position: 1-417
Cow position: chr25:33157212-33156797 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 218

Conread position: 1-417
Cow position: chr25:33157296-33156881 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 268
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 300, 307

Conread position: 1-417
Cow position: chr25:33157380-33156965 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 378

Conread position: 1-417
Cow position: chr25:33298656-33299071 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 266
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 30, 45

Conread position: 1-417
Cow position: chr25:33298740-33299155 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 260
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 30, 44

Conread position: 1-417
Cow position: chr25:33298824-33299239 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 270
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 28, 40

Conread position: 1-417
Cow position: chr25:33299076-33299491 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 276
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 30, 40

Conread position: 1-417
Cow position: chr25:33299328-33299743 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 261
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 56

Conread position: 1-417
Cow position: chr25:33299412-33299827 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 16, 12

Conread position: 1-417
Cow position: chr25:34770031-34769616 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 122

Conread position: 1-417
Cow position: chr25:36800808-36801223 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 262
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 30, 44

Conread position: 1-417
Cow position: chr25:36800892-36801307 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 268
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 41

Conread position: 1-417
Cow position: chr25:36801228-36801631 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 257
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 106, 0

Conread position: 1-417
Cow position: chr25:36801384-36801799 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 249
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 44

Conread position: 1-417
Cow position: chr25:36801552-36801967 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 262
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 30, 39

Conread position: 1-418
Cow position: chr25:23420392-23420808 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 115

Conread position: 1-418
Cow position: chr25:33299244-33299660 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 30, 40

Conread position: 1-418
Cow position: chr25:34447283-34447699 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 222

Conread position: 1-418
Cow position: chr25:34769695-34769279 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 151

Conread position: 1-418
Cow position: chr25:34769779-34769363 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 1-424
Cow position: chr25:33298572-33298995 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 271
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 115, 129

Conread position: 1-424
Cow position: chr25:34769863-34769440 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 409

Conread position: 1-424
Cow position: chr25:34769947-34769524 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 38

Conread position: 2-360
Cow position: chr25:33306452-33306103 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 225
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 31

Conread position: 2-377
Cow position: chr25:33305225-33304855 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 236
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 39

Conread position: 2-417
Cow position: chr25:33157463-33157049 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 0

Conread position: 5-329
Cow position: chr25:33145111-33145435 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 208
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 41

Conread position: 5-364
Cow position: chr25:22235842-22236202 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 215
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 352, 0

Conread position: 5-416
Cow position: chr25:33298492-33298902 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 264
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 74, 67

Conread position: 5-416
Cow position: chr25:34447035-34447445 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 57

Conread position: 5-417
Cow position: chr25:33298996-33299407 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 265
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 26, 36

Conread position: 5-418
Cow position: chr25:34770111-34769699 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 35

Conread position: 6-416
Cow position: chr25:34446952-34447363 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 251
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 36

Conread position: 6-418
Cow position: chr25:34447204-34447615 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 218

Conread position: 7-316
Cow position: chr25:34769521-34769213 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 305, 0

Conread position: 7-346
Cow position: chr25:33157122-33156784 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 0

Conread position: 7-362
Cow position: chr25:36800982-36801337 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 228
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 24, 34

Conread position: 7-384
Cow position: chr25:23420482-23420859 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 248
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 38

Conread position: 7-407
Cow position: chr25:33127733-33128133 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 22

Conread position: 7-417
Cow position: chr25:33144864-33145270 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 258
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 153, 148

Conread position: 7-417
Cow position: chr25:33298914-33299323 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 34

Conread position: 7-417
Cow position: chr25:33305387-33304982 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 34

Conread position: 7-417
Cow position: chr25:36800730-36801139 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 252
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 111, 121

Conread position: 9-418
Cow position: chr25:33305947-33305545 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 247
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 32

Conread position: 16-338
Cow position: chr25:346472-346794 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 199
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 164, 169

Conread position: 30-377
Cow position: chr25:18642216-18641867 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 225
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 101, 6

Conread position: 37-418
Cow position: chr25:33157512-33157132 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 238
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 41, 32

Conread position: 55-334
Cow position: chr25:326986-327265 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 62

Conread position: 55-417
Cow position: chr25:36800526-36800887 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 221
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 101

Conread position: 73-418
Cow position: chr25:23420380-23420724 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 0

Conread position: 73-418
Cow position: chr25:36801372-36801716 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 223
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 93, 98

Conread position: 75-417
Cow position: chr25:33298478-33298819 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 217
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 88, 81

Conread position: 76-399
Cow position: chr25:366725-367048 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 201
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 22

Conread position: 76-417
Cow position: chr25:36801543-36801883 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 213
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 333, 0

Conread position: 77-415
Cow position: chr25:346447-346786 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 208
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 334

Conread position: 77-418
Cow position: chr25:326924-327264 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 223
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 19

Conread position: 93-418
Cow position: chr25:23420316-23420640 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 210
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 317, 0

Conread position: 137-417
Cow position: chr25:366702-366981 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 272, 0

Conread position: 153-345
Cow position: chr25:34433016-34433205 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 178-418
Cow position: chr25:34432954-34433193 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 11, 25

Conread position: 235-418
Cow position: chr25:33127793-33127975 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 175, 0

Show alignments to all cow chromosomes.