Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8012J06.5 |
| Conread position: | 1-249 |
| Cow position: | chr3:62721812-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-276 |
| Cow position: | chr3:62743185-62743460 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 1-329 |
| Cow position: | chr3:62721896-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-331 |
| Cow position: | chr3:68046030-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 116, 126 |
| Conread position: | 1-368 |
| Cow position: | chr3:77351064-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 1-410 |
| Cow position: | chr3:62742786-62743174 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 221 |
| Conread position: | 1-411 |
| Cow position: | chr3:68045610-68046020 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 1-417 |
| Cow position: | chr3:62722148-62721733 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 271 |
| Conread position: | 1-418 |
| Cow position: | chr3:62742288-62742700 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 253, 66 |
| Conread position: | 1-418 |
| Cow position: | chr3:62742539-62742951 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 1-418 |
| Cow position: | chr3:68027185-68027601 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 1-436 |
| Cow position: | chr3:62742870-62743282 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 3-360 |
| Cow position: | chr3:68027019-68027376 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 3-417 |
| Cow position: | chr3:62722230-62721817 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 0 |
| Conread position: | 3-419 |
| Cow position: | chr3:68045780-68046195 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 5-418 |
| Cow position: | chr3:62721976-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 0 |
| Conread position: | 6-383 |
| Cow position: | chr3:68045951-68046328 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 7-392 |
| Cow position: | chr3:68027359-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 7-417 |
| Cow position: | chr3:62722310-62721901 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 0 |
| Conread position: | 7-417 |
| Cow position: | chr3:68027107-68027518 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 139, 112 |
| Conread position: | 7-418 |
| Cow position: | chr3:77351141-77350739 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 162, 37 |
| Conread position: | 55-337 |
| Cow position: | chr3:68027491-68027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 59-417 |
| Cow position: | chr3:62743080-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 58, 35 |
| Conread position: | 60-418 |
| Cow position: | chr3:68045921-68046278 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 61-422 |
| Cow position: | chr3:77350927-77350568 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 67-418 |
| Cow position: | chr3:62742270-62742619 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 76-280 |
| Cow position: | chr3:16020456-16020259 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 126, 47 |
| Conread position: | 78-418 |
| Cow position: | chr3:68027010-68027349 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 78-424 |
| Cow position: | chr3:62722323-62721977 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 332, 337 |
| Conread position: | 79-418 |
| Cow position: | chr3:68045605-68045942 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 44, 5 |
| Conread position: | 223-418 |
| Cow position: | chr3:68027491-68027685 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 187, 0 |
Show alignments to all cow chromosomes.