Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8012J06.5 |
| Conread position: | 1-281 |
| Cow position: | chr7:1439983-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 1-300 |
| Cow position: | chr7:11600758-11600459 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-327 |
| Cow position: | chr7:8325834-8326163 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 311, 0 |
| Conread position: | 1-360 |
| Cow position: | chr7:8325078-8325437 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 123 |
| Conread position: | 1-360 |
| Cow position: | chr7:8325330-8325689 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 115 |
| Conread position: | 1-365 |
| Cow position: | chr7:1439900-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 1-365 |
| Cow position: | chr7:8324826-8325191 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 1-368 |
| Cow position: | chr7:8277437-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 158, 117 |
| Conread position: | 1-369 |
| Cow position: | chr7:8243395-8243763 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 223, 205 |
| Conread position: | 1-383 |
| Cow position: | chr7:18390171-18390553 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 1-398 |
| Cow position: | chr7:18390423-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 151, 116 |
| Conread position: | 1-410 |
| Cow position: | chr7:18390339-18390748 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-411 |
| Cow position: | chr7:8277353-8277763 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 162, 170 |
| Conread position: | 1-413 |
| Cow position: | chr7:8243563-8243974 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-415 |
| Cow position: | chr7:11434639-11434231 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 408, 110 |
| Conread position: | 1-417 |
| Cow position: | chr7:3180294-3180709 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 1-417 |
| Cow position: | chr7:8277605-8278020 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 1-418 |
| Cow position: | chr7:1014948-1015364 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 120 |
| Conread position: | 1-418 |
| Cow position: | chr7:1439734-1440147 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 1-418 |
| Cow position: | chr7:3179790-3180206 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 373 |
| Conread position: | 1-418 |
| Cow position: | chr7:3179958-3180374 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-418 |
| Cow position: | chr7:3180042-3180458 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr7:3180126-3180542 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 1-418 |
| Cow position: | chr7:8242892-8243308 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 1-418 |
| Cow position: | chr7:8243479-8243895 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr7:8277773-8278189 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 1-418 |
| Cow position: | chr7:8324994-8325410 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr7:8325162-8325578 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 282, 291 |
| Conread position: | 1-418 |
| Cow position: | chr7:8325246-8325662 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 1-418 |
| Cow position: | chr7:8325414-8325830 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 1-418 |
| Cow position: | chr7:8325582-8325998 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 1-418 |
| Cow position: | chr7:11600926-11600510 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chr7:11601010-11600594 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 369 |
| Conread position: | 1-418 |
| Cow position: | chr7:11601094-11600678 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 367 |
| Conread position: | 1-418 |
| Cow position: | chr7:42878847-42878431 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-418 |
| Cow position: | chr7:42878931-42878515 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-418 |
| Cow position: | chr7:42879015-42878599 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-418 |
| Cow position: | chr7:42879099-42878683 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-418 |
| Cow position: | chr7:42879183-42878767 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 1-419 |
| Cow position: | chr7:8278109-8278524 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 117, 129 |
| Conread position: | 1-421 |
| Cow position: | chr7:8278025-8278444 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 1-421 |
| Cow position: | chr7:8325666-8326085 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-423 |
| Cow position: | chr7:3180462-3180882 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 1-425 |
| Cow position: | chr7:42878679-42878255 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 124 |
| Conread position: | 2-335 |
| Cow position: | chr7:1014283-1014616 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 15, 11 |
| Conread position: | 2-411 |
| Cow position: | chr7:11600841-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 188 |
| Conread position: | 2-438 |
| Cow position: | chr7:11601177-11600743 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 0 |
| Conread position: | 3-417 |
| Cow position: | chr7:18390005-18390418 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 3-417 |
| Cow position: | chr7:18390257-18390670 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 3-417 |
| Cow position: | chr7:42879265-42878852 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 124 |
| Conread position: | 5-418 |
| Cow position: | chr7:3179710-3180122 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 6-418 |
| Cow position: | chr7:8243317-8243727 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 111, 63 |
| Conread position: | 7-365 |
| Cow position: | chr7:8243737-8244093 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 7-411 |
| Cow position: | chr7:42878757-42878353 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 217 |
| Conread position: | 7-417 |
| Cow position: | chr7:1014372-1014775 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 152, 164 |
| Conread position: | 7-418 |
| Cow position: | chr7:1014540-1014944 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 113, 120 |
| Conread position: | 7-418 |
| Cow position: | chr7:1014786-1015196 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 7-418 |
| Cow position: | chr7:1014870-1015280 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 7-418 |
| Cow position: | chr7:3180216-3180626 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 7-418 |
| Cow position: | chr7:3180384-3180794 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 114 |
| Conread position: | 7-418 |
| Cow position: | chr7:8277275-8277685 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 7-418 |
| Cow position: | chr7:8278283-8278685 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 7-472 |
| Cow position: | chr7:1014456-1014913 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 412, 186 |
| Conread position: | 8-365 |
| Cow position: | chr7:1438349-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 116 |
| Conread position: | 9-418 |
| Cow position: | chr7:8243068-8243475 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 182, 200 |
| Conread position: | 16-415 |
| Cow position: | chr7:1015047-1015445 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 194, 178 |
| Conread position: | 54-417 |
| Cow position: | chr7:8244034-8244378 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 302, 43 |
| Conread position: | 55-417 |
| Cow position: | chr7:18390141-18390502 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 59-417 |
| Cow position: | chr7:11601204-11600847 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 59-429 |
| Cow position: | chr7:1439453-1439823 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 60-408 |
| Cow position: | chr7:1014257-1014605 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 61-364 |
| Cow position: | chr7:8243707-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 105, 110 |
| Conread position: | 61-367 |
| Cow position: | chr7:8325810-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-360 |
| Cow position: | chr7:11434895-11434616 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 68-351 |
| Cow position: | chr7:11434824-11434541 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 75-418 |
| Cow position: | chr7:42879277-42878935 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 149 |
| Conread position: | 76-418 |
| Cow position: | chr7:8324817-8325158 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 81-360 |
| Cow position: | chr7:8242804-8243083 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 156-418 |
| Cow position: | chr7:8324729-8324990 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 139, 130 |
Show alignments to all cow chromosomes.