Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8012J06.5 |
| Conread position: | 1-278 |
| Cow position: | chr8:45201699-45201976 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 1-360 |
| Cow position: | chr8:45201615-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 1-364 |
| Cow position: | chr8:55581335-55581699 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 1-407 |
| Cow position: | chr8:55581083-55581489 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 122 |
| Conread position: | 1-412 |
| Cow position: | chr8:46816978-46817390 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 1-413 |
| Cow position: | chr8:55581251-55581663 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 1-414 |
| Cow position: | chr8:48407369-48406957 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 1-416 |
| Cow position: | chr8:46816138-46816552 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 1-417 |
| Cow position: | chr8:46816222-46816637 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 125 |
| Conread position: | 1-417 |
| Cow position: | chr8:48407201-48406786 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 370 |
| Conread position: | 1-418 |
| Cow position: | chr8:45201447-45201863 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 1-418 |
| Cow position: | chr8:46816474-46816890 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 116, 124 |
| Conread position: | 1-418 |
| Cow position: | chr8:46816642-46817058 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-418 |
| Cow position: | chr8:46816726-46817142 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 272 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 1-418 |
| Cow position: | chr8:46816894-46817310 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 1-418 |
| Cow position: | chr8:48407453-48407037 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 118 |
| Conread position: | 1-422 |
| Cow position: | chr8:46816558-46816979 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 1-434 |
| Cow position: | chr8:48406697-48406266 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 2-416 |
| Cow position: | chr8:46815971-46816386 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 2-418 |
| Cow position: | chr8:48406864-48406449 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 103, 118 |
| Conread position: | 2-418 |
| Cow position: | chr8:48407284-48406869 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 407, 0 |
| Conread position: | 3-371 |
| Cow position: | chr8:45200945-45201313 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 122 |
| Conread position: | 3-417 |
| Cow position: | chr8:45201029-45201442 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 3-418 |
| Cow position: | chr8:45201281-45201695 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 113, 122 |
| Conread position: | 3-418 |
| Cow position: | chr8:46816056-46816470 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 5-355 |
| Cow position: | chr8:55581423-55581773 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 5-418 |
| Cow position: | chr8:55581003-55581415 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 363 |
| Conread position: | 6-418 |
| Cow position: | chr8:55580920-55581331 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 0 |
| Conread position: | 6-418 |
| Cow position: | chr8:55581172-55581583 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 7-411 |
| Cow position: | chr8:48407531-48407127 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 190, 181 |
| Conread position: | 7-418 |
| Cow position: | chr8:45201537-45201948 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 7-418 |
| Cow position: | chr8:46816396-46816806 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 7-418 |
| Cow position: | chr8:48407027-48406617 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 109 |
| Conread position: | 7-424 |
| Cow position: | chr8:46816816-46817233 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 16-418 |
| Cow position: | chr8:45201126-45201527 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 103, 108 |
| Conread position: | 16-418 |
| Cow position: | chr8:55580846-55581247 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 152 |
| Conread position: | 17-417 |
| Cow position: | chr8:46815899-46816301 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 59, 111 |
| Conread position: | 46-418 |
| Cow position: | chr8:48406736-48406365 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 52-416 |
| Cow position: | chr8:45200910-45201273 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 104 |
| Conread position: | 53-418 |
| Cow position: | chr8:48407653-48407289 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 55-418 |
| Cow position: | chr8:46816360-46816722 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 56-418 |
| Cow position: | chr8:55580802-55581163 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 61-418 |
| Cow position: | chr8:45201423-45201779 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 0 |
| Conread position: | 97-416 |
| Cow position: | chr8:6958059-6957742 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 257, 278 |
| Conread position: | 126-418 |
| Cow position: | chr8:45200898-45201191 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 285 |
| Conread position: | 181-408 |
| Cow position: | chr8:6958059-6957832 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.