Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8012J06.5 |
| Conread position: | 1-346 |
| Cow position: | chrX:29044999-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-355 |
| Cow position: | chrX:29045734-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 1-414 |
| Cow position: | chrX:25324822-25324410 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 193, 221 |
| Conread position: | 1-417 |
| Cow position: | chrX:25325410-25324995 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 1-418 |
| Cow position: | chrX:25309815-25310231 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 1-418 |
| Cow position: | chrX:25310067-25310483 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 1-418 |
| Cow position: | chrX:25324906-25324490 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 194, 223 |
| Conread position: | 1-418 |
| Cow position: | chrX:25325158-25324742 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 116 |
| Conread position: | 1-418 |
| Cow position: | chrX:25325326-25324910 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-418 |
| Cow position: | chrX:25325494-25325078 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 1-418 |
| Cow position: | chrX:25325830-25325414 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 1-418 |
| Cow position: | chrX:29045083-29044667 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 1-418 |
| Cow position: | chrX:29045167-29044751 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 1-418 |
| Cow position: | chrX:29045251-29044835 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 363 |
| Conread position: | 1-421 |
| Cow position: | chrX:25310151-25310570 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 129 |
| Conread position: | 1-443 |
| Cow position: | chrX:25324654-25324216 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 355, 376 |
| Conread position: | 2-367 |
| Cow position: | chrX:12627365-12627728 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 2-418 |
| Cow position: | chrX:25325661-25325246 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 3-366 |
| Cow position: | chrX:12627700-12628064 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 3-418 |
| Cow position: | chrX:25309733-25310147 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 366 |
| Conread position: | 3-418 |
| Cow position: | chrX:25309901-25310315 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 122 |
| Conread position: | 5-269 |
| Cow position: | chrX:25310323-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 6-281 |
| Cow position: | chrX:13826934-13826659 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 125 |
| Conread position: | 7-416 |
| Cow position: | chrX:25325236-25324828 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 7-418 |
| Cow position: | chrX:25325572-25325162 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 133 |
| Conread position: | 7-418 |
| Cow position: | chrX:25325740-25325330 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 7-419 |
| Cow position: | chrX:25324732-25324321 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 118 |
| Conread position: | 28-418 |
| Cow position: | chrX:25325888-25325498 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 35-368 |
| Cow position: | chrX:29045779-29045450 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 327, 12 |
| Conread position: | 47-418 |
| Cow position: | chrX:25309693-25310063 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 309, 321 |
| Conread position: | 55-344 |
| Cow position: | chrX:25310289-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 140, 169 |
| Conread position: | 55-418 |
| Cow position: | chrX:25324936-25324574 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 59-417 |
| Cow position: | chrX:25325016-25324659 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 72-418 |
| Cow position: | chrX:29045831-29045486 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 76-416 |
| Cow position: | chrX:29045260-29044921 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 95 |
| Conread position: | 85-418 |
| Cow position: | chrX:12627280-12627611 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 87-418 |
| Cow position: | chrX:29045333-29045003 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 105-416 |
| Cow position: | chrX:25309667-25309977 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 155-429 |
| Cow position: | chrX:29045832-29045560 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 42, 56 |
Show alignments to all cow chromosomes.