Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8013B15.5 |
| Conread position: | 475-684 |
| Cow position: | chr11:63156974-63156757 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 152 |
| Conread position: | 481-686 |
| Cow position: | chr11:5648699-5648908 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 484-684 |
| Cow position: | chr11:52832767-52832559 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 178 |
| Conread position: | 485-684 |
| Cow position: | chr11:62574051-62573841 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 101, 141 |
| Conread position: | 485-690 |
| Cow position: | chr11:54134129-54133914 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 5, 23 |
| Conread position: | 486-692 |
| Cow position: | chr11:67871649-67871428 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 489-684 |
| Cow position: | chr11:35881876-35882078 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 489-684 |
| Cow position: | chr11:43646456-43646243 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 489-687 |
| Cow position: | chr11:27722348-27722563 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 497-641 |
| Cow position: | chr11:70978763-70978615 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 6 |
| Conread position: | 497-679 |
| Cow position: | chr11:24216112-24216299 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 83, 43 |
| Conread position: | 497-684 |
| Cow position: | chr11:30210873-30211072 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 498-687 |
| Cow position: | chr11:16540833-16541025 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 81, 116 |
| Conread position: | 498-687 |
| Cow position: | chr11:75874783-75874582 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 87, 5 |
| Conread position: | 499-675 |
| Cow position: | chr11:21852330-21852138 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 499-676 |
| Cow position: | chr11:54244646-54244832 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 500-686 |
| Cow position: | chr11:44815479-44815673 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 500-696 |
| Cow position: | chr11:72869845-72869643 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 501-679 |
| Cow position: | chr11:11785306-11785495 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 501-680 |
| Cow position: | chr11:16232963-16232771 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 501-680 |
| Cow position: | chr11:18698853-18699053 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 501-680 |
| Cow position: | chr11:40275627-40275438 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-680 |
| Cow position: | chr11:40279119-40278930 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-683 |
| Cow position: | chr11:28395449-28395642 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 501-684 |
| Cow position: | chr11:19501943-19502136 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 501-684 |
| Cow position: | chr11:31506823-31507015 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 501-684 |
| Cow position: | chr11:32438977-32438784 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 501-684 |
| Cow position: | chr11:58588320-58588514 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 501-684 |
| Cow position: | chr11:63508389-63508578 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 501-686 |
| Cow position: | chr11:69402274-69402080 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 501-693 |
| Cow position: | chr11:18572775-18572978 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 502-665 |
| Cow position: | chr11:50951532-50951703 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 502-675 |
| Cow position: | chr11:57111140-57110975 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 502-679 |
| Cow position: | chr11:27681476-27681663 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 502-680 |
| Cow position: | chr11:9055936-9056120 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 139 |
| Conread position: | 502-685 |
| Cow position: | chr11:62215218-62215024 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 504-607 |
| Cow position: | chr11:10127686-10127580 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 504-668 |
| Cow position: | chr11:71009109-71009278 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 504-678 |
| Cow position: | chr11:249505-249324 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 84 |
| Conread position: | 504-678 |
| Cow position: | chr11:65958723-65958539 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 504-680 |
| Cow position: | chr11:69392539-69392712 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 103 |
| Conread position: | 504-683 |
| Cow position: | chr11:11752540-11752350 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 504-684 |
| Cow position: | chr11:18785892-18785709 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 504-684 |
| Cow position: | chr11:35669975-35669779 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 123 |
| Conread position: | 504-684 |
| Cow position: | chr11:42083449-42083640 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 504-686 |
| Cow position: | chr11:27462121-27461923 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 504-687 |
| Cow position: | chr11:19606295-19606482 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 504-687 |
| Cow position: | chr11:42359091-42359283 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 504-689 |
| Cow position: | chr11:41272115-41272310 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 504-693 |
| Cow position: | chr11:19259536-19259335 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 505-676 |
| Cow position: | chr11:14046098-14045920 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 505-679 |
| Cow position: | chr11:8840769-8840600 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 505-689 |
| Cow position: | chr11:21398940-21399129 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 95, 183 |
| Conread position: | 505-689 |
| Cow position: | chr11:77683148-77683344 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 505-691 |
| Cow position: | chr11:9368806-9369000 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 506-677 |
| Cow position: | chr11:64904976-64905157 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 171 |
| Conread position: | 506-680 |
| Cow position: | chr11:50953584-50953400 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 506-680 |
| Cow position: | chr11:79884467-79884658 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 73, 101 |
| Conread position: | 506-684 |
| Cow position: | chr11:18144838-18144656 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 147 |
| Conread position: | 506-688 |
| Cow position: | chr11:61427573-61427759 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 507-668 |
| Cow position: | chr11:19586438-19586612 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 507-690 |
| Cow position: | chr11:47193495-47193686 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 508-680 |
| Cow position: | chr11:47125530-47125707 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 508-685 |
| Cow position: | chr11:21136797-21136983 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 509-674 |
| Cow position: | chr11:2419758-2419928 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 513-686 |
| Cow position: | chr11:62016019-62015836 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 514-680 |
| Cow position: | chr11:48900858-48900676 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 515-674 |
| Cow position: | chr11:56821255-56821085 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 515-680 |
| Cow position: | chr11:44609553-44609723 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 516-679 |
| Cow position: | chr11:44655672-44655506 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 64, 112 |
| Conread position: | 523-680 |
| Cow position: | chr11:48932573-48932406 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 524-692 |
| Cow position: | chr11:29978340-29978158 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 537-685 |
| Cow position: | chr11:32072155-32072310 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 148 |
| Conread position: | 542-684 |
| Cow position: | chr11:22009372-22009219 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.