Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8013B15.5 |
| Conread position: | 439-686 |
| Cow position: | chr13:7046929-7046661 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 469-598 |
| Cow position: | chr13:24110505-24110374 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 480-674 |
| Cow position: | chr13:32904793-32904590 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 482-680 |
| Cow position: | chr13:49457700-49457489 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 484-692 |
| Cow position: | chr13:2803489-2803261 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 485-666 |
| Cow position: | chr13:52568987-52569185 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 485-674 |
| Cow position: | chr13:16343699-16343503 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 23 |
| Conread position: | 489-644 |
| Cow position: | chr13:53788096-53788268 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 489-683 |
| Cow position: | chr13:47322398-47322608 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 191 |
| Conread position: | 497-684 |
| Cow position: | chr13:6540319-6540518 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 501-664 |
| Cow position: | chr13:60650911-60651086 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 501-669 |
| Cow position: | chr13:12207042-12206859 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 501-674 |
| Cow position: | chr13:8838996-8839171 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 501-676 |
| Cow position: | chr13:21627890-21628072 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 501-676 |
| Cow position: | chr13:34995333-34995521 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 501-680 |
| Cow position: | chr13:15945475-15945280 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-680 |
| Cow position: | chr13:20466292-20466481 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 501-680 |
| Cow position: | chr13:29034794-29034622 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 89 |
| Conread position: | 501-680 |
| Cow position: | chr13:29820213-29820402 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 501-683 |
| Cow position: | chr13:8822856-8822671 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 103, 88 |
| Conread position: | 501-683 |
| Cow position: | chr13:12745665-12745474 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 501-683 |
| Cow position: | chr13:20839560-20839364 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 501-684 |
| Cow position: | chr13:54094804-54094609 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 501-685 |
| Cow position: | chr13:38631584-38631781 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 501-686 |
| Cow position: | chr13:9665053-9664863 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 501-686 |
| Cow position: | chr13:13578039-13578237 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 501-688 |
| Cow position: | chr13:25537617-25537416 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 83, 124 |
| Conread position: | 501-689 |
| Cow position: | chr13:661651-661840 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 501-691 |
| Cow position: | chr13:22075663-22075463 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 502-676 |
| Cow position: | chr13:12233457-12233645 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 502-684 |
| Cow position: | chr13:8245340-8245531 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 502-684 |
| Cow position: | chr13:11768051-11768244 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 502-685 |
| Cow position: | chr13:20180406-20180215 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 503-680 |
| Cow position: | chr13:1958999-1958812 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 504-679 |
| Cow position: | chr13:13446164-13446349 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 504-680 |
| Cow position: | chr13:40464217-40464034 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 504-684 |
| Cow position: | chr13:24715233-24715032 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 504-690 |
| Cow position: | chr13:51940725-51940521 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 504-692 |
| Cow position: | chr13:10932541-10932346 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 505-641 |
| Cow position: | chr13:52055602-52055747 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 505-674 |
| Cow position: | chr13:6887862-6887692 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 505-676 |
| Cow position: | chr13:25435133-25435315 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 505-680 |
| Cow position: | chr13:23512360-23512167 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 505-680 |
| Cow position: | chr13:47502724-47502904 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 505-686 |
| Cow position: | chr13:47188426-47188243 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 67, 112 |
| Conread position: | 507-686 |
| Cow position: | chr13:9161911-9161715 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 509-680 |
| Cow position: | chr13:1558529-1558709 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 512-688 |
| Cow position: | chr13:28520444-28520631 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 513-680 |
| Cow position: | chr13:22227777-22227946 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 523-690 |
| Cow position: | chr13:26522965-26523142 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 147 |
| Conread position: | 527-687 |
| Cow position: | chr13:40885469-40885298 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 532-684 |
| Cow position: | chr13:57341330-57341490 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 25 |
Show alignments to all cow chromosomes.