Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8013B15.5 |
| Conread position: | 1-177 |
| Cow position: | chr8:42847077-42846901 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 101 |
| Conread position: | 298-694 |
| Cow position: | chr8:42846919-42846507 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 444-687 |
| Cow position: | chr8:48086667-48086407 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 37, 222 |
| Conread position: | 481-683 |
| Cow position: | chr8:51905056-51904844 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 481-684 |
| Cow position: | chr8:33842741-33842942 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 483-684 |
| Cow position: | chr8:9130950-9130731 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 483-684 |
| Cow position: | chr8:35185716-35185936 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 88 |
| Conread position: | 484-684 |
| Cow position: | chr8:35520012-35520228 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 202 |
| Conread position: | 484-684 |
| Cow position: | chr8:54210859-54211064 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 485-680 |
| Cow position: | chr8:15537017-15536806 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 496-690 |
| Cow position: | chr8:3182455-3182659 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 497-676 |
| Cow position: | chr8:33807718-33807521 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 498-684 |
| Cow position: | chr8:43168030-43167844 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 105 |
| Conread position: | 498-691 |
| Cow position: | chr8:19011795-19011595 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 5 |
| Conread position: | 498-692 |
| Cow position: | chr8:3593659-3593845 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 500-683 |
| Cow position: | chr8:11594038-11594232 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 501-632 |
| Cow position: | chr8:39969819-39969679 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 501-666 |
| Cow position: | chr8:18033920-18033743 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 501-666 |
| Cow position: | chr8:60320524-60320691 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 78 |
| Conread position: | 501-676 |
| Cow position: | chr8:26228957-26229134 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 155 |
| Conread position: | 501-676 |
| Cow position: | chr8:55305083-55305269 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 501-680 |
| Cow position: | chr8:13813421-13813231 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-680 |
| Cow position: | chr8:32827671-32827489 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 68, 135 |
| Conread position: | 501-680 |
| Cow position: | chr8:53360237-53360040 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 501-683 |
| Cow position: | chr8:39017707-39017899 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-687 |
| Cow position: | chr8:49265300-49265105 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 142 |
| Conread position: | 501-690 |
| Cow position: | chr8:8134497-8134299 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-692 |
| Cow position: | chr8:29964859-29965069 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 501-693 |
| Cow position: | chr8:6469164-6468960 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 501-693 |
| Cow position: | chr8:9583539-9583340 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 501-694 |
| Cow position: | chr8:37487295-37487092 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-695 |
| Cow position: | chr8:46850361-46850153 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 501-696 |
| Cow position: | chr8:37122967-37123175 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 502-680 |
| Cow position: | chr8:46203271-46203457 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 504-661 |
| Cow position: | chr8:37334177-37334334 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 504-672 |
| Cow position: | chr8:20657357-20657178 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 504-676 |
| Cow position: | chr8:31646016-31645834 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 504-677 |
| Cow position: | chr8:27294734-27294913 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 156 |
| Conread position: | 504-679 |
| Cow position: | chr8:6724332-6724156 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 504-680 |
| Cow position: | chr8:25133579-25133764 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 504-680 |
| Cow position: | chr8:33510617-33510429 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 181 |
| Conread position: | 504-683 |
| Cow position: | chr8:13810210-13810397 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 504-683 |
| Cow position: | chr8:32192695-32192891 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 504-686 |
| Cow position: | chr8:25455411-25455603 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 504-687 |
| Cow position: | chr8:15686398-15686203 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 504-690 |
| Cow position: | chr8:33218949-33218748 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 159 |
| Conread position: | 504-690 |
| Cow position: | chr8:43163698-43163502 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 505-649 |
| Cow position: | chr8:49599917-49599764 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 48 |
| Conread position: | 505-672 |
| Cow position: | chr8:55829340-55829165 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 66, 150 |
| Conread position: | 505-679 |
| Cow position: | chr8:13221848-13221665 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 505-683 |
| Cow position: | chr8:43027647-43027461 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 55 |
| Conread position: | 506-674 |
| Cow position: | chr8:24426662-24426839 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 506-680 |
| Cow position: | chr8:29413899-29414079 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 510-675 |
| Cow position: | chr8:16971365-16971200 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 513-676 |
| Cow position: | chr8:34287938-34288108 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 516-679 |
| Cow position: | chr8:49576950-49577117 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 517-679 |
| Cow position: | chr8:13732588-13732416 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 67, 108 |
| Conread position: | 519-672 |
| Cow position: | chr8:61216815-61216651 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 520-680 |
| Cow position: | chr8:60949722-60949551 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.