Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8013B15.5 |
| Conread position: | 462-683 |
| Cow position: | chr9:24429014-24429252 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 483-663 |
| Cow position: | chr9:32991331-32991142 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 483-684 |
| Cow position: | chr9:6852009-6852225 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 483-685 |
| Cow position: | chr9:4861446-4861221 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 491-680 |
| Cow position: | chr9:32266340-32266537 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 498-688 |
| Cow position: | chr9:15006713-15006907 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 499-686 |
| Cow position: | chr9:33668769-33668565 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 499-692 |
| Cow position: | chr9:8657391-8657595 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 501-674 |
| Cow position: | chr9:32115563-32115744 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 501-674 |
| Cow position: | chr9:53794494-53794673 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 501-674 |
| Cow position: | chr9:55562538-55562351 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 501-676 |
| Cow position: | chr9:5829102-5828923 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 501-676 |
| Cow position: | chr9:27347834-27347652 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 501-679 |
| Cow position: | chr9:34468540-34468728 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 501-680 |
| Cow position: | chr9:8599643-8599455 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 501-680 |
| Cow position: | chr9:15684750-15684938 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 501-680 |
| Cow position: | chr9:26559574-26559765 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 501-680 |
| Cow position: | chr9:41958748-41958926 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 69, 102 |
| Conread position: | 501-684 |
| Cow position: | chr9:12499048-12498855 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 501-686 |
| Cow position: | chr9:10666988-10667177 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 501-686 |
| Cow position: | chr9:20200331-20200143 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 501-686 |
| Cow position: | chr9:43911966-43911775 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 501-687 |
| Cow position: | chr9:20896934-20896742 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 92, 83 |
| Conread position: | 501-687 |
| Cow position: | chr9:28983220-28983024 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 501-688 |
| Cow position: | chr9:28947896-28947710 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 501-689 |
| Cow position: | chr9:39428762-39428959 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 191 |
| Conread position: | 501-692 |
| Cow position: | chr9:34204167-34203967 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 71, 191 |
| Conread position: | 502-679 |
| Cow position: | chr9:14960984-14960802 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 113 |
| Conread position: | 502-679 |
| Cow position: | chr9:25469083-25468905 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 42 |
| Conread position: | 502-680 |
| Cow position: | chr9:8617853-8617679 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 502-683 |
| Cow position: | chr9:43037519-43037328 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 503-687 |
| Cow position: | chr9:42037688-42037495 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 504-672 |
| Cow position: | chr9:60355177-60355362 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 504-677 |
| Cow position: | chr9:55321672-55321487 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 504-680 |
| Cow position: | chr9:38289291-38289464 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 504-684 |
| Cow position: | chr9:3387724-3387542 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 504-684 |
| Cow position: | chr9:3959101-3958919 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 154 |
| Conread position: | 504-686 |
| Cow position: | chr9:9823472-9823657 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 504-688 |
| Cow position: | chr9:22318385-22318181 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 504-689 |
| Cow position: | chr9:5433667-5433465 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 505-666 |
| Cow position: | chr9:6214120-6214286 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 505-680 |
| Cow position: | chr9:23042808-23042629 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 505-680 |
| Cow position: | chr9:38580889-38580707 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 159 |
| Conread position: | 506-686 |
| Cow position: | chr9:2888015-2887816 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 506-691 |
| Cow position: | chr9:5209613-5209422 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 73, 148 |
| Conread position: | 506-692 |
| Cow position: | chr9:4538827-4539022 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 507-687 |
| Cow position: | chr9:35100921-35100730 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 508-674 |
| Cow position: | chr9:5756957-5757141 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 510-687 |
| Cow position: | chr9:60549382-60549571 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 512-692 |
| Cow position: | chr9:5399163-5398973 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 530-680 |
| Cow position: | chr9:34431829-34431669 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 530-680 |
| Cow position: | chr9:62330989-62331149 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 533-674 |
| Cow position: | chr9:48634894-48635048 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.